Wall clock time and date at job start Tue Mar 31 2020 04:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47207 * 2 1 4 4 C 1.46500 * 120.00114 * 89.99611 * 3 2 1 5 5 C 1.50702 * 109.46971 * 90.00175 * 4 3 2 6 6 H 1.08006 * 120.00040 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00111 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46995 * 270.00477 * 9 7 5 11 11 H 1.48500 * 109.47205 * 29.99985 * 9 7 5 12 12 H 1.48500 * 109.47575 * 150.00154 * 9 7 5 13 13 C 1.34774 * 120.00201 * 269.99901 * 3 2 1 14 14 O 1.21282 * 120.00408 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99800 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47195 * 174.80721 * 15 13 3 17 17 C 1.46840 * 110.99853 * 300.20324 * 16 15 13 18 18 C 1.53042 * 109.52316 * 185.83774 * 17 16 15 19 19 C 1.53118 * 109.27931 * 300.81974 * 18 17 16 20 20 C 1.53121 * 109.16012 * 57.65461 * 19 18 17 21 21 C 1.46851 * 111.00115 * 64.41070 * 16 15 13 22 22 H 1.09000 * 109.46621 * 294.18037 * 21 16 15 23 23 C 1.53000 * 109.45927 * 54.14503 * 21 16 15 24 24 H 1.09001 * 109.47598 * 302.90930 * 23 21 16 25 25 C 1.53006 * 109.47050 * 182.91209 * 23 21 16 26 26 O 1.42899 * 109.47373 * 62.91279 * 23 21 16 27 27 H 1.08993 * 109.47069 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47001 * 300.00140 * 1 2 3 29 29 H 1.08998 * 109.46816 * 60.00055 * 1 2 3 30 30 H 1.08998 * 109.47591 * 240.00326 * 2 1 3 31 31 H 1.09004 * 109.47238 * 119.99846 * 2 1 3 32 32 H 1.09002 * 109.46918 * 330.00864 * 4 3 2 33 33 H 1.08993 * 109.47479 * 210.00002 * 4 3 2 34 34 H 0.96995 * 120.00144 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.46890 * 294.80154 * 15 13 3 36 36 H 1.08992 * 109.47369 * 54.80382 * 15 13 3 37 37 H 1.08999 * 109.46448 * 305.85345 * 17 16 15 38 38 H 1.09004 * 109.46349 * 65.82215 * 17 16 15 39 39 H 1.09006 * 109.49943 * 180.87694 * 18 17 16 40 40 H 1.09001 * 109.53310 * 60.78472 * 18 17 16 41 41 H 1.08994 * 109.52115 * 297.75092 * 19 18 17 42 42 H 1.08994 * 109.57527 * 177.59013 * 19 18 17 43 43 H 1.08994 * 109.50276 * 182.40774 * 20 19 18 44 44 H 1.09002 * 109.50174 * 62.28149 * 20 19 18 45 45 H 1.08997 * 109.46966 * 59.99859 * 25 23 21 46 46 H 1.09003 * 109.46806 * 180.02562 * 25 23 21 47 47 H 1.09001 * 109.46692 * 300.00276 * 25 23 21 48 48 H 0.96699 * 114.00767 * 179.97438 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8351 1.7038 6 1 4.3426 1.2302 1.0962 7 6 4.1491 2.3897 2.8780 8 7 5.3910 2.1826 3.2579 9 14 3.0128 3.4352 3.9292 10 1 3.1163 4.8555 3.5080 11 1 1.6131 2.9693 3.7592 12 1 3.4056 3.3121 5.3560 13 6 2.2430 2.0166 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9913 1.3064 -2.4723 16 7 2.1898 2.2435 -3.5860 17 6 1.2728 3.3857 -3.4824 18 6 1.4054 4.2627 -4.7296 19 6 2.8505 4.7539 -4.8510 20 6 3.7890 3.5454 -4.9084 21 6 3.5873 2.6892 -3.6560 22 1 3.8253 3.2789 -2.7707 23 6 4.5088 1.4695 -3.7185 24 1 4.3291 0.8334 -2.8518 25 6 5.9674 1.9317 -3.7183 26 8 4.2430 0.7323 -4.9135 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 2.0284 33 1 2.0955 3.1410 1.1384 34 1 5.7170 2.5731 4.0837 35 1 2.6855 0.4718 -2.5716 36 1 0.9679 0.9318 -2.4907 37 1 0.2483 3.0227 -3.4010 38 1 1.5216 3.9721 -2.5979 39 1 0.7358 5.1187 -4.6453 40 1 1.1431 3.6813 -5.6135 41 1 3.1002 5.3682 -3.9860 42 1 2.9605 5.3440 -5.7607 43 1 4.8224 3.8889 -4.9517 44 1 3.5644 2.9521 -5.7948 45 1 6.1701 2.4939 -2.8068 46 1 6.6239 1.0626 -3.7633 47 1 6.1471 2.5677 -4.5850 48 1 4.7925 -0.0562 -5.0198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000303994127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:41 Heat of formation + Delta-G solvation = -80.785528 kcal Electronic energy + Delta-G solvation = -26797.028769 eV Core-core repulsion = 23273.009339 eV Total energy + Delta-G solvation = -3524.019431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30693 -38.31516 -36.47177 -35.38280 -33.37704 -32.64955 -31.92409 -30.37305 -28.89829 -28.48278 -26.50496 -24.18488 -23.18207 -23.00113 -21.81004 -20.60198 -19.57012 -18.31622 -17.03033 -16.86186 -16.50040 -16.11048 -15.56522 -14.97755 -14.59475 -14.46960 -14.01279 -13.83210 -13.72696 -13.50915 -13.40137 -12.88610 -12.78497 -12.50532 -12.46461 -12.28354 -12.06348 -11.89739 -11.75586 -11.57902 -11.37674 -10.99976 -10.99926 -10.80239 -10.59025 -10.54203 -10.48163 -10.21065 -10.15886 -10.00583 -9.71859 -9.57496 -9.51544 -8.62924 -7.76774 -7.65236 -6.12954 -4.11548 3.24680 3.25483 3.31466 3.33389 3.81955 4.07171 4.35697 4.44962 4.92577 4.95505 4.99728 5.12457 5.20593 5.22586 5.27445 5.30567 5.37093 5.46527 5.54429 5.60207 5.69788 5.72498 5.81671 5.86382 5.90422 5.96153 6.01779 6.07972 6.11654 6.12848 6.17821 6.25725 6.27561 6.37242 6.38103 6.47068 6.67050 6.70127 6.90755 7.24336 7.32820 7.34359 7.57568 7.83117 8.22061 8.42877 8.87605 8.93603 9.47729 11.00370 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.005097 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.880481 B = 5492.425040 C = 5776.085874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.215 3.785 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.267 1.267 12 H -0.285 1.285 13 C 0.476 3.524 14 O -0.540 6.540 15 C 0.030 3.970 16 N -0.500 5.500 17 C 0.037 3.963 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.103 4.103 21 C 0.078 3.922 22 H 0.091 0.909 23 C 0.105 3.895 24 H 0.053 0.947 25 C -0.186 4.186 26 O -0.552 6.552 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 -2.977 -14.733 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.094 3.906 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.191 1.191 12 H -0.210 1.210 13 C 0.262 3.738 14 O -0.419 6.419 15 C -0.102 4.102 16 N -0.222 5.222 17 C -0.091 4.091 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.141 4.141 21 C -0.030 4.030 22 H 0.109 0.891 23 C 0.046 3.954 24 H 0.071 0.929 25 C -0.244 4.244 26 O -0.357 6.357 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -7.037 -2.086 -15.098 16.787 hybrid contribution 0.195 0.359 1.726 1.774 sum -6.842 -1.727 -13.372 15.119 Atomic orbital electron populations 1.22223 0.96686 1.01672 1.02188 1.21448 0.93485 0.83847 1.03088 1.48124 1.63483 1.13334 1.07265 1.19632 0.97261 0.93336 0.80382 1.21296 0.95296 1.32833 1.07073 0.90898 1.24850 0.94977 0.95807 0.97344 1.69890 1.15127 1.44991 1.23579 0.86857 0.81482 0.81569 0.79813 1.19988 1.19130 1.21049 1.21792 0.78250 0.87478 0.86242 1.90558 1.46147 1.18303 1.86898 1.22422 1.03651 0.97000 0.87135 1.62381 1.04849 1.15923 1.39087 1.22322 0.95665 0.92339 0.98775 1.21513 0.96558 0.98443 0.98310 1.21582 0.95368 0.97678 1.01319 1.21516 0.98570 0.95668 0.98363 1.21955 0.87272 0.94116 0.99616 0.89142 1.21897 0.93568 0.92806 0.87125 0.92914 1.22530 0.96468 1.02157 1.03235 1.86626 1.64606 1.41835 1.42583 0.91878 0.92293 0.92935 0.91373 0.89749 0.95438 0.94767 0.92567 0.88064 0.88604 0.91826 0.91364 0.92135 0.91702 0.92107 0.92386 0.92022 0.90763 0.91164 0.92472 0.91684 0.78850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.19 37.16 0.38 -1.73 16 2 C 0.11 1.60 5.86 -4.04 -0.02 1.58 16 3 N -0.59 -11.76 2.46 -175.06 -0.43 -12.19 16 4 C 0.21 5.17 4.23 -5.19 -0.02 5.15 16 5 C -0.53 -14.88 9.94 -34.44 -0.34 -15.22 16 6 H 0.07 2.26 8.06 -52.48 -0.42 1.83 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.48 9.30 7.07 -10.98 -0.08 9.22 16 14 O -0.54 -12.42 11.22 5.56 0.06 -12.36 16 15 C 0.03 0.45 3.92 -4.97 -0.02 0.43 16 16 N -0.50 -7.72 4.61 -228.12 -1.05 -8.78 16 17 C 0.04 0.55 5.00 -3.83 -0.02 0.53 16 18 C -0.11 -1.43 6.09 -26.65 -0.16 -1.59 16 19 C -0.12 -1.60 6.00 -26.61 -0.16 -1.76 16 20 C -0.10 -1.44 4.90 -26.65 -0.13 -1.57 16 21 C 0.08 1.24 1.33 -67.72 -0.09 1.15 16 22 H 0.09 1.76 5.69 -51.93 -0.30 1.46 16 23 C 0.11 1.50 2.87 -26.73 -0.08 1.42 16 24 H 0.05 0.82 6.06 -51.93 -0.31 0.50 16 25 C -0.19 -2.44 9.25 37.16 0.34 -2.09 16 26 O -0.55 -7.08 12.43 -35.23 -0.44 -7.52 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.62 7.13 -51.93 -0.37 0.25 16 30 H 0.07 0.88 6.58 -51.93 -0.34 0.54 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 33 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.10 1.48 5.41 -51.93 -0.28 1.20 16 36 H 0.10 1.28 6.90 -51.93 -0.36 0.92 16 37 H 0.06 0.89 8.12 -51.93 -0.42 0.46 16 38 H 0.07 1.24 5.68 -51.93 -0.29 0.94 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 44 H 0.07 1.06 7.59 -51.93 -0.39 0.67 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 48 H 0.37 3.20 9.08 45.56 0.41 3.61 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -33.02 359.87 -8.28 -41.30 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.45 Total: 6.36 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.50 Total: -2.47 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.71 Total: -47.59 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.38 Total: -19.88 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.02 -8.28 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303994127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.488 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds