Wall clock time and date at job start Tue Mar 31 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47207 * 2 1 4 4 C 1.46500 * 120.00114 * 89.99611 * 3 2 1 5 5 C 1.50702 * 109.46971 * 90.00175 * 4 3 2 6 6 H 1.08006 * 120.00040 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00111 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46995 * 270.00477 * 9 7 5 11 11 H 1.48500 * 109.47205 * 29.99985 * 9 7 5 12 12 H 1.48500 * 109.47575 * 150.00154 * 9 7 5 13 13 C 1.34774 * 120.00201 * 269.99901 * 3 2 1 14 14 O 1.21282 * 120.00408 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99800 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47195 * 174.80721 * 15 13 3 17 17 C 1.46840 * 110.99853 * 300.20324 * 16 15 13 18 18 C 1.53042 * 109.52316 * 185.83774 * 17 16 15 19 19 C 1.53118 * 109.27931 * 300.81974 * 18 17 16 20 20 C 1.53121 * 109.16012 * 57.65461 * 19 18 17 21 21 C 1.46851 * 111.00115 * 64.41070 * 16 15 13 22 22 H 1.09000 * 109.46621 * 294.18037 * 21 16 15 23 23 C 1.53000 * 109.45927 * 54.14503 * 21 16 15 24 24 H 1.09001 * 109.47598 * 302.90930 * 23 21 16 25 25 C 1.53006 * 109.47050 * 182.91209 * 23 21 16 26 26 O 1.42899 * 109.47373 * 62.91279 * 23 21 16 27 27 H 1.08993 * 109.47069 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47001 * 300.00140 * 1 2 3 29 29 H 1.08998 * 109.46816 * 60.00055 * 1 2 3 30 30 H 1.08998 * 109.47591 * 240.00326 * 2 1 3 31 31 H 1.09004 * 109.47238 * 119.99846 * 2 1 3 32 32 H 1.09002 * 109.46918 * 330.00864 * 4 3 2 33 33 H 1.08993 * 109.47479 * 210.00002 * 4 3 2 34 34 H 0.96995 * 120.00144 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.46890 * 294.80154 * 15 13 3 36 36 H 1.08992 * 109.47369 * 54.80382 * 15 13 3 37 37 H 1.08999 * 109.46448 * 305.85345 * 17 16 15 38 38 H 1.09004 * 109.46349 * 65.82215 * 17 16 15 39 39 H 1.09006 * 109.49943 * 180.87694 * 18 17 16 40 40 H 1.09001 * 109.53310 * 60.78472 * 18 17 16 41 41 H 1.08994 * 109.52115 * 297.75092 * 19 18 17 42 42 H 1.08994 * 109.57527 * 177.59013 * 19 18 17 43 43 H 1.08994 * 109.50276 * 182.40774 * 20 19 18 44 44 H 1.09002 * 109.50174 * 62.28149 * 20 19 18 45 45 H 1.08997 * 109.46966 * 59.99859 * 25 23 21 46 46 H 1.09003 * 109.46806 * 180.02562 * 25 23 21 47 47 H 1.09001 * 109.46692 * 300.00276 * 25 23 21 48 48 H 0.96699 * 114.00767 * 179.97438 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8351 1.7038 6 1 4.3426 1.2302 1.0962 7 6 4.1491 2.3897 2.8780 8 7 5.3910 2.1826 3.2579 9 14 3.0128 3.4352 3.9292 10 1 3.1163 4.8555 3.5080 11 1 1.6131 2.9693 3.7592 12 1 3.4056 3.3121 5.3560 13 6 2.2430 2.0166 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9913 1.3064 -2.4723 16 7 2.1898 2.2435 -3.5860 17 6 1.2728 3.3857 -3.4824 18 6 1.4054 4.2627 -4.7296 19 6 2.8505 4.7539 -4.8510 20 6 3.7890 3.5454 -4.9084 21 6 3.5873 2.6892 -3.6560 22 1 3.8253 3.2789 -2.7707 23 6 4.5088 1.4695 -3.7185 24 1 4.3291 0.8334 -2.8518 25 6 5.9674 1.9317 -3.7183 26 8 4.2430 0.7323 -4.9135 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 2.0284 33 1 2.0955 3.1410 1.1384 34 1 5.7170 2.5731 4.0837 35 1 2.6855 0.4718 -2.5716 36 1 0.9679 0.9318 -2.4907 37 1 0.2483 3.0227 -3.4010 38 1 1.5216 3.9721 -2.5979 39 1 0.7358 5.1187 -4.6453 40 1 1.1431 3.6813 -5.6135 41 1 3.1002 5.3682 -3.9860 42 1 2.9605 5.3440 -5.7607 43 1 4.8224 3.8889 -4.9517 44 1 3.5644 2.9521 -5.7948 45 1 6.1701 2.4939 -2.8068 46 1 6.6239 1.0626 -3.7633 47 1 6.1471 2.5677 -4.5850 48 1 4.7925 -0.0562 -5.0198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000303994127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:40 Heat of formation + Delta-G solvation = -105.918023 kcal Electronic energy + Delta-G solvation = -26798.118596 eV Core-core repulsion = 23273.009339 eV Total energy + Delta-G solvation = -3525.109257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66821 -39.67198 -37.60535 -36.88696 -34.98456 -34.39087 -33.03152 -31.89072 -30.17197 -29.91426 -28.03598 -25.33076 -24.72922 -24.30141 -23.32485 -21.74919 -20.81725 -19.79571 -19.13718 -18.06282 -17.93421 -17.43919 -16.88591 -16.56033 -16.11691 -15.72289 -15.53951 -15.20972 -14.91557 -14.74425 -14.60258 -14.49205 -14.09707 -13.93017 -13.67634 -13.59651 -13.43949 -13.24382 -13.20631 -12.87385 -12.71046 -12.56837 -12.39005 -12.12050 -12.07290 -11.94062 -11.81439 -11.73126 -11.59948 -11.29632 -11.20146 -11.07028 -10.86560 -10.69404 -9.41087 -9.04686 -8.37481 -6.41812 1.28050 1.31457 1.39959 1.73835 2.26494 2.31906 2.86331 2.96911 3.39231 3.68374 3.80986 3.84163 3.97727 4.09985 4.13118 4.20413 4.26995 4.35162 4.40860 4.46830 4.52726 4.60901 4.67607 4.73708 4.77576 4.79869 4.85112 4.90439 4.95240 4.98430 4.99759 5.03731 5.08277 5.10246 5.18796 5.27206 5.33234 5.36677 5.44130 5.54781 5.66146 6.01084 6.10862 6.21499 6.58879 6.70710 6.97628 7.18870 7.40732 8.79281 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.005097 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.880481 B = 5492.425040 C = 5776.085874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.599 5.599 4 C 0.226 3.774 5 C -0.531 4.531 6 H 0.028 0.972 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.241 1.241 12 H -0.274 1.274 13 C 0.468 3.532 14 O -0.581 6.581 15 C 0.040 3.960 16 N -0.492 5.492 17 C 0.035 3.965 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.097 4.097 21 C 0.076 3.924 22 H 0.047 0.953 23 C 0.113 3.887 24 H 0.036 0.964 25 C -0.182 4.182 26 O -0.554 6.554 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 -3.839 -16.359 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.103 3.897 5 C -0.569 4.569 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.164 1.164 12 H -0.199 1.199 13 C 0.257 3.743 14 O -0.463 6.463 15 C -0.091 4.091 16 N -0.214 5.214 17 C -0.093 4.093 18 C -0.143 4.143 19 C -0.160 4.160 20 C -0.135 4.135 21 C -0.032 4.032 22 H 0.065 0.935 23 C 0.053 3.947 24 H 0.054 0.946 25 C -0.240 4.240 26 O -0.360 6.360 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.347 -3.004 -16.751 19.416 hybrid contribution 1.003 0.563 2.162 2.448 sum -8.345 -2.441 -14.589 16.983 Atomic orbital electron populations 1.22146 0.93912 1.03714 1.01982 1.21762 0.95691 0.81219 1.03807 1.48252 1.63741 1.15091 1.05963 1.19242 0.94741 0.92820 0.82866 1.21516 0.96958 1.31902 1.06567 0.95318 1.25801 0.96630 0.97180 0.98926 1.70038 1.17304 1.46564 1.24476 0.85761 0.80494 0.78983 0.77991 1.20427 1.16403 1.19881 1.22666 0.77111 0.87164 0.87393 1.90563 1.47726 1.20401 1.87596 1.22524 1.05514 0.96688 0.84419 1.62499 1.04653 1.15975 1.38257 1.22355 0.96200 0.92213 0.98502 1.21503 0.96582 0.98703 0.97483 1.21598 0.95517 0.97366 1.01508 1.21474 0.99131 0.95653 0.97222 1.21869 0.87875 0.94707 0.98766 0.93528 1.21648 0.93646 0.92199 0.87184 0.94606 1.22487 0.96358 1.02856 1.02270 1.86570 1.65307 1.42831 1.41316 0.88647 0.93596 0.92035 0.88790 0.91010 0.93840 0.96796 0.92303 0.87051 0.85656 0.90303 0.94915 0.90667 0.90468 0.94244 0.89993 0.91630 0.90323 0.94005 0.90467 0.90485 0.76522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.19 71.98 0.73 -2.76 16 2 C 0.10 2.83 5.86 86.38 0.51 3.33 16 3 N -0.60 -24.00 2.46 -826.15 -2.03 -26.03 16 4 C 0.23 11.06 4.23 85.63 0.36 11.42 16 5 C -0.53 -31.22 9.94 25.60 0.25 -30.97 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.75 5.47 84.65 0.46 1.22 16 8 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 9 Si 0.94 44.92 27.47 68.60 1.88 46.81 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.47 18.59 7.07 87.66 0.62 19.21 16 14 O -0.58 -28.09 11.22 -3.04 -0.03 -28.13 16 15 C 0.04 1.17 3.92 85.56 0.34 1.51 16 16 N -0.49 -14.69 4.61 -875.64 -4.04 -18.73 16 17 C 0.03 1.03 5.00 86.33 0.43 1.46 16 18 C -0.11 -2.53 6.09 30.65 0.19 -2.34 16 19 C -0.12 -3.10 6.00 30.67 0.18 -2.91 16 20 C -0.10 -2.62 4.90 30.65 0.15 -2.47 16 21 C 0.08 2.43 1.33 44.94 0.06 2.49 16 22 H 0.05 1.94 5.69 -2.39 -0.01 1.92 16 23 C 0.11 3.18 2.87 30.60 0.09 3.27 16 24 H 0.04 1.13 6.06 -2.39 -0.01 1.11 16 25 C -0.18 -4.78 9.25 71.98 0.67 -4.12 16 26 O -0.55 -12.95 12.43 -148.98 -1.85 -14.80 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.25 7.13 -2.39 -0.02 1.23 16 30 H 0.09 2.22 6.58 -2.39 -0.02 2.20 16 31 H 0.07 2.25 8.07 -2.39 -0.02 2.24 16 32 H 0.04 1.98 7.13 -2.39 -0.02 1.97 16 33 H 0.01 0.74 6.85 -2.39 -0.02 0.72 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.11 3.08 5.41 -2.38 -0.01 3.07 16 36 H 0.13 2.94 6.90 -2.39 -0.02 2.93 16 37 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 38 H 0.03 1.22 5.68 -2.39 -0.01 1.21 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 1.68 6.55 -2.39 -0.02 1.66 16 44 H 0.08 2.08 7.59 -2.39 -0.02 2.06 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 1.82 6.52 -2.39 -0.02 1.80 16 48 H 0.39 5.70 9.08 -74.06 -0.67 5.03 16 Total: -1.00 -75.89 359.87 -0.51 -76.41 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.22 Total: 25.51 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.04 Total: -1.66 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.77 Total: -104.13 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.89 Total: -42.93 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -75.89 -0.51 -76.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303994127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.513 kcal (2) G-P(sol) polarization free energy of solvation -75.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds