Wall clock time and date at job start Tue Mar 31 2020 04:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 O 1.42904 * 109.47504 * 240.00056 * 2 1 3 5 5 C 1.52998 * 109.47225 * 119.99730 * 2 1 3 6 6 C 1.53123 * 109.52477 * 180.02562 * 5 2 1 7 7 C 1.53039 * 109.27656 * 177.62522 * 6 5 2 8 8 N 1.46841 * 109.52313 * 300.81657 * 7 6 5 9 9 C 1.46902 * 111.00365 * 185.84045 * 8 7 6 10 10 H 1.08995 * 109.47765 * 192.34239 * 9 8 7 11 11 C 1.53002 * 109.47063 * 312.34372 * 9 8 7 12 12 C 1.50701 * 109.46865 * 72.33704 * 9 8 7 13 13 O 1.21280 * 120.00151 * 343.77100 * 12 9 8 14 14 N 1.34774 * 120.00142 * 163.77136 * 12 9 8 15 15 C 1.46507 * 119.99929 * 0.02562 * 14 12 9 16 16 C 1.46496 * 120.00272 * 179.97438 * 14 12 9 17 17 C 1.50702 * 109.47156 * 90.00194 * 16 14 12 18 18 H 1.08008 * 119.99337 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00297 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99964 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99961 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47375 * 89.99786 * 21 19 17 23 23 H 1.48502 * 109.47028 * 210.00127 * 21 19 17 24 24 H 1.48501 * 109.46985 * 329.99811 * 21 19 17 25 25 C 1.46853 * 111.19824 * 61.74881 * 8 7 6 26 26 C 1.53039 * 109.52003 * 298.25466 * 25 8 7 27 27 H 1.09002 * 109.47343 * 60.00648 * 1 2 3 28 28 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47413 * 300.00121 * 1 2 3 30 30 H 0.96703 * 113.99560 * 59.99648 * 4 2 1 31 31 H 1.09007 * 109.52243 * 59.87498 * 5 2 1 32 32 H 1.08996 * 109.49884 * 57.68309 * 6 5 2 33 33 H 1.09000 * 109.53150 * 297.58289 * 6 5 2 34 34 H 1.09004 * 109.45834 * 180.80301 * 7 6 5 35 35 H 1.08996 * 109.46498 * 60.83860 * 7 6 5 36 36 H 1.08992 * 109.47587 * 179.97438 * 11 9 8 37 37 H 1.09008 * 109.46683 * 299.99427 * 11 9 8 38 38 H 1.09005 * 109.47525 * 59.98904 * 11 9 8 39 39 H 1.08992 * 109.47558 * 89.99542 * 15 14 12 40 40 H 1.08997 * 109.46745 * 210.00503 * 15 14 12 41 41 H 1.09000 * 109.46578 * 329.99544 * 15 14 12 42 42 H 1.09004 * 109.47412 * 210.00154 * 16 14 12 43 43 H 1.09000 * 109.47197 * 330.00593 * 16 14 12 44 44 H 0.96999 * 119.99892 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.46326 * 58.27044 * 25 8 7 46 46 H 1.08999 * 109.46263 * 178.24212 * 25 8 7 47 47 H 1.08998 * 109.50626 * 299.23662 * 26 25 8 48 48 H 1.08994 * 109.50504 * 179.11831 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5712 -0.7213 1.2508 7 6 4.0751 -1.3913 2.5311 8 7 3.5667 -0.6616 3.6996 9 6 4.1416 -1.1924 4.9429 10 1 3.5942 -0.7924 5.7963 11 6 4.0388 -2.7190 4.9413 12 6 5.5897 -0.7867 5.0400 13 8 6.1746 -0.3863 4.0559 14 7 6.2349 -0.8687 6.2204 15 6 5.5286 -1.3529 7.4091 16 6 7.6427 -0.4748 6.3147 17 6 7.7327 0.9907 6.6542 18 1 6.8311 1.5707 6.7862 19 6 8.9657 1.5913 6.7954 20 7 9.0441 2.8702 7.0923 21 14 10.5248 0.5886 6.5652 22 1 10.9400 0.6393 5.1404 23 1 11.6047 1.1503 7.4158 24 1 10.2691 -0.8209 6.9564 25 6 2.0991 -0.6884 3.7452 26 6 1.5362 0.0026 2.5011 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.7210 -0.2701 -1.9980 31 1 1.6752 -1.7484 1.2513 32 1 3.9351 0.3053 1.2097 33 1 3.9364 -1.2720 0.3839 34 1 5.1650 -1.3803 2.5420 35 1 3.7222 -2.4220 2.5648 36 1 4.4658 -3.1129 5.8635 37 1 2.9914 -3.0125 4.8711 38 1 4.5862 -3.1192 4.0878 39 1 5.6382 -2.4349 7.4814 40 1 5.9506 -0.8847 8.2983 41 1 4.4713 -1.0992 7.3320 42 1 8.1321 -1.0590 7.0940 43 1 8.1359 -0.6574 5.3599 44 1 9.9116 3.2926 7.1920 45 1 1.7554 -1.7224 3.7732 46 1 1.7539 -0.1668 4.6378 47 1 1.8682 1.0405 2.4797 48 1 0.4471 -0.0312 2.5274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304018452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:25 Heat of formation + Delta-G solvation = -80.726707 kcal Electronic energy + Delta-G solvation = -25745.246474 eV Core-core repulsion = 22221.229594 eV Total energy + Delta-G solvation = -3524.016880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11844 -38.73324 -37.14237 -34.85378 -34.29556 -32.50531 -31.20672 -30.73765 -29.03812 -28.08770 -26.06919 -25.30043 -23.74013 -22.99445 -21.85673 -20.76990 -19.55252 -18.30843 -17.33111 -16.89676 -16.47495 -16.11117 -15.25964 -14.98639 -14.74772 -14.66796 -14.46685 -13.98185 -13.84695 -13.59690 -13.36332 -12.97650 -12.74983 -12.65236 -12.39448 -12.31222 -12.16481 -11.98931 -11.92276 -11.65428 -11.57348 -11.49670 -11.34634 -10.95877 -10.77948 -10.64154 -10.49307 -10.38763 -10.20983 -10.10749 -10.00546 -9.47806 -8.82564 -8.54606 -8.00868 -7.62074 -6.04228 -4.02482 3.31979 3.37339 3.39116 3.39897 3.70951 3.98653 4.21630 4.43370 4.55842 4.71370 4.85919 4.94804 5.03882 5.09029 5.15986 5.19107 5.25723 5.29312 5.36344 5.39770 5.52144 5.53917 5.60934 5.68127 5.69703 5.73557 5.75284 5.81861 5.89423 5.91464 5.99652 6.06385 6.08254 6.21849 6.27392 6.40536 6.51993 6.72464 6.97064 7.19889 7.31910 7.41463 7.47708 7.65938 8.32440 8.52413 8.99320 9.09368 9.56276 11.09325 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.003496 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.934981 B = 8007.925231 C = 8519.949556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.105 3.895 3 H 0.056 0.944 4 O -0.566 6.566 5 C -0.080 4.080 6 C -0.104 4.104 7 C 0.050 3.950 8 N -0.514 5.514 9 C 0.064 3.936 10 H 0.100 0.900 11 C -0.180 4.180 12 C 0.517 3.483 13 O -0.524 6.524 14 N -0.599 5.599 15 C 0.083 3.917 16 C 0.217 3.783 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.057 3.943 26 C -0.110 4.110 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.374 0.626 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.036 0.964 44 H 0.264 0.736 45 H 0.031 0.969 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.388 -10.581 -8.811 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.046 3.954 3 H 0.074 0.926 4 O -0.371 6.371 5 C -0.099 4.099 6 C -0.142 4.142 7 C -0.077 4.077 8 N -0.238 5.238 9 C -0.048 4.048 10 H 0.117 0.883 11 C -0.239 4.239 12 C 0.302 3.698 13 O -0.399 6.399 14 N -0.332 5.332 15 C -0.061 4.061 16 C 0.097 3.903 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.071 4.071 26 C -0.148 4.148 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.502 -10.107 -8.885 22.077 hybrid contribution 0.214 -0.736 -0.214 0.796 sum -17.288 -10.843 -9.099 22.343 Atomic orbital electron populations 1.22570 0.96865 1.02609 1.02399 1.21840 0.92282 0.95438 0.85841 0.92584 1.86539 1.77112 1.57646 1.15832 1.21197 0.96929 0.99443 0.92303 1.21525 0.93523 1.02247 0.96857 1.22327 1.02437 0.93794 0.89172 1.61751 1.05526 1.55178 1.01333 1.21657 0.95072 0.93972 0.94081 0.88267 1.22377 1.02166 0.95845 1.03486 1.20079 0.87692 0.78568 0.83431 1.90610 1.67858 1.45476 1.35992 1.47809 1.13524 1.64108 1.07754 1.21703 0.96727 0.97992 0.89695 1.19633 0.77023 0.96386 0.97305 1.21347 0.94526 0.92794 1.47800 0.90751 1.24862 0.98842 0.94812 0.94559 1.69904 1.24898 1.10319 1.48580 0.86847 0.83361 0.80696 0.78737 1.19925 1.21137 1.19124 1.22081 0.87836 0.98697 0.98477 1.21651 0.99336 1.00662 0.93119 0.92664 0.92010 0.91202 0.77960 0.91197 0.91100 0.91127 0.88236 0.95479 0.91276 0.92039 0.91594 0.93743 0.90610 0.92222 0.95369 0.94640 0.92628 0.95037 0.90710 0.90674 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 9.19 37.15 0.34 -1.04 16 2 C 0.10 1.00 3.16 -26.74 -0.08 0.91 16 3 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 4 O -0.57 -5.67 12.70 -35.23 -0.45 -6.12 16 5 C -0.08 -0.88 2.05 -90.49 -0.19 -1.07 16 6 C -0.10 -1.42 5.20 -26.65 -0.14 -1.55 16 7 C 0.05 0.75 4.17 -3.84 -0.02 0.74 16 8 N -0.51 -7.81 4.36 -228.08 -0.99 -8.80 16 9 C 0.06 0.98 1.93 -68.86 -0.13 0.85 16 10 H 0.10 1.38 6.23 -51.93 -0.32 1.06 16 11 C -0.18 -2.20 8.20 37.16 0.30 -1.90 16 12 C 0.52 10.70 6.84 -10.99 -0.08 10.62 16 13 O -0.52 -13.03 13.85 5.56 0.08 -12.95 16 14 N -0.60 -12.48 2.86 -182.95 -0.52 -13.00 16 15 C 0.08 1.27 9.36 59.85 0.56 1.83 16 16 C 0.22 5.40 4.23 -5.19 -0.02 5.37 16 17 C -0.53 -15.39 9.94 -34.44 -0.34 -15.74 16 18 H 0.07 2.40 8.06 -52.48 -0.42 1.97 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 21 Si 0.88 21.89 27.47 -169.99 -4.67 17.23 16 22 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 25 C 0.06 0.66 5.22 -3.83 -0.02 0.64 16 26 C -0.11 -1.14 4.96 -26.65 -0.13 -1.27 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.48 6.50 -51.93 -0.34 0.14 16 30 H 0.37 2.17 9.08 45.56 0.41 2.58 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.97 7.77 -51.93 -0.40 0.56 16 34 H 0.10 1.82 5.87 -51.93 -0.30 1.52 16 35 H 0.03 0.37 6.59 -51.93 -0.34 0.03 16 36 H 0.07 0.78 6.47 -51.93 -0.34 0.45 16 37 H 0.06 0.63 7.09 -51.92 -0.37 0.26 16 38 H 0.07 0.87 6.45 -51.93 -0.33 0.54 16 39 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 40 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 41 H 0.06 0.77 6.02 -51.93 -0.31 0.45 16 42 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 43 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.03 0.33 7.13 -51.93 -0.37 -0.04 16 46 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.07 0.56 6.58 -51.93 -0.34 0.21 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -35.37 360.31 -7.82 -43.19 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.43 Total: 1.96 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.04 Total: 0.42 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.74 Total: -49.16 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.37 Total: -19.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.37 -7.82 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304018452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.537 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds