Wall clock time and date at job start Tue Mar 31 2020 04:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 O 1.42904 * 109.47504 * 240.00056 * 2 1 3 5 5 C 1.52998 * 109.47225 * 119.99730 * 2 1 3 6 6 C 1.53123 * 109.52477 * 180.02562 * 5 2 1 7 7 C 1.53039 * 109.27656 * 177.62522 * 6 5 2 8 8 N 1.46841 * 109.52313 * 300.81657 * 7 6 5 9 9 C 1.46902 * 111.00365 * 185.84045 * 8 7 6 10 10 H 1.08995 * 109.47765 * 192.34239 * 9 8 7 11 11 C 1.53002 * 109.47063 * 312.34372 * 9 8 7 12 12 C 1.50701 * 109.46865 * 72.33704 * 9 8 7 13 13 O 1.21280 * 120.00151 * 343.77100 * 12 9 8 14 14 N 1.34774 * 120.00142 * 163.77136 * 12 9 8 15 15 C 1.46507 * 119.99929 * 0.02562 * 14 12 9 16 16 C 1.46496 * 120.00272 * 179.97438 * 14 12 9 17 17 C 1.50702 * 109.47156 * 90.00194 * 16 14 12 18 18 H 1.08008 * 119.99337 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00297 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99964 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99961 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47375 * 89.99786 * 21 19 17 23 23 H 1.48502 * 109.47028 * 210.00127 * 21 19 17 24 24 H 1.48501 * 109.46985 * 329.99811 * 21 19 17 25 25 C 1.46853 * 111.19824 * 61.74881 * 8 7 6 26 26 C 1.53039 * 109.52003 * 298.25466 * 25 8 7 27 27 H 1.09002 * 109.47343 * 60.00648 * 1 2 3 28 28 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47413 * 300.00121 * 1 2 3 30 30 H 0.96703 * 113.99560 * 59.99648 * 4 2 1 31 31 H 1.09007 * 109.52243 * 59.87498 * 5 2 1 32 32 H 1.08996 * 109.49884 * 57.68309 * 6 5 2 33 33 H 1.09000 * 109.53150 * 297.58289 * 6 5 2 34 34 H 1.09004 * 109.45834 * 180.80301 * 7 6 5 35 35 H 1.08996 * 109.46498 * 60.83860 * 7 6 5 36 36 H 1.08992 * 109.47587 * 179.97438 * 11 9 8 37 37 H 1.09008 * 109.46683 * 299.99427 * 11 9 8 38 38 H 1.09005 * 109.47525 * 59.98904 * 11 9 8 39 39 H 1.08992 * 109.47558 * 89.99542 * 15 14 12 40 40 H 1.08997 * 109.46745 * 210.00503 * 15 14 12 41 41 H 1.09000 * 109.46578 * 329.99544 * 15 14 12 42 42 H 1.09004 * 109.47412 * 210.00154 * 16 14 12 43 43 H 1.09000 * 109.47197 * 330.00593 * 16 14 12 44 44 H 0.96999 * 119.99892 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.46326 * 58.27044 * 25 8 7 46 46 H 1.08999 * 109.46263 * 178.24212 * 25 8 7 47 47 H 1.08998 * 109.50626 * 299.23662 * 26 25 8 48 48 H 1.08994 * 109.50504 * 179.11831 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5712 -0.7213 1.2508 7 6 4.0751 -1.3913 2.5311 8 7 3.5667 -0.6616 3.6996 9 6 4.1416 -1.1924 4.9429 10 1 3.5942 -0.7924 5.7963 11 6 4.0388 -2.7190 4.9413 12 6 5.5897 -0.7867 5.0400 13 8 6.1746 -0.3863 4.0559 14 7 6.2349 -0.8687 6.2204 15 6 5.5286 -1.3529 7.4091 16 6 7.6427 -0.4748 6.3147 17 6 7.7327 0.9907 6.6542 18 1 6.8311 1.5707 6.7862 19 6 8.9657 1.5913 6.7954 20 7 9.0441 2.8702 7.0923 21 14 10.5248 0.5886 6.5652 22 1 10.9400 0.6393 5.1404 23 1 11.6047 1.1503 7.4158 24 1 10.2691 -0.8209 6.9564 25 6 2.0991 -0.6884 3.7452 26 6 1.5362 0.0026 2.5011 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.7210 -0.2701 -1.9980 31 1 1.6752 -1.7484 1.2513 32 1 3.9351 0.3053 1.2097 33 1 3.9364 -1.2720 0.3839 34 1 5.1650 -1.3803 2.5420 35 1 3.7222 -2.4220 2.5648 36 1 4.4658 -3.1129 5.8635 37 1 2.9914 -3.0125 4.8711 38 1 4.5862 -3.1192 4.0878 39 1 5.6382 -2.4349 7.4814 40 1 5.9506 -0.8847 8.2983 41 1 4.4713 -1.0992 7.3320 42 1 8.1321 -1.0590 7.0940 43 1 8.1359 -0.6574 5.3599 44 1 9.9116 3.2926 7.1920 45 1 1.7554 -1.7224 3.7732 46 1 1.7539 -0.1668 4.6378 47 1 1.8682 1.0405 2.4797 48 1 0.4471 -0.0312 2.5274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304018452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:24 Heat of formation + Delta-G solvation = -108.856564 kcal Electronic energy + Delta-G solvation = -25746.466276 eV Core-core repulsion = 22221.229594 eV Total energy + Delta-G solvation = -3525.236682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38696 -39.92175 -38.13323 -36.56176 -35.36428 -34.62129 -32.22706 -31.76879 -30.45913 -29.40245 -27.45874 -26.41216 -25.18733 -24.02019 -23.35150 -21.78709 -20.55904 -19.79968 -19.13272 -18.13903 -17.85621 -17.41844 -16.62900 -16.40017 -16.00830 -15.65372 -15.61923 -15.46106 -15.03821 -14.66935 -14.63355 -14.40125 -13.99185 -13.88628 -13.63975 -13.48311 -13.29067 -13.21113 -13.12498 -12.92327 -12.87395 -12.63535 -12.50652 -12.40860 -12.34702 -12.00679 -11.85418 -11.73929 -11.60225 -11.32899 -11.14065 -10.83676 -10.82877 -10.33965 -9.36778 -9.09955 -8.33911 -6.38689 1.31466 1.36329 1.44467 1.85013 2.27708 2.30904 3.00245 3.02576 3.29391 3.67531 3.72256 3.84244 4.01055 4.07453 4.12749 4.28454 4.33020 4.34991 4.41328 4.43193 4.52878 4.61845 4.62942 4.70501 4.75360 4.79270 4.85832 4.86797 4.92384 4.94810 4.97722 5.03467 5.04377 5.11223 5.16913 5.19298 5.31047 5.36747 5.46590 5.50500 5.65479 6.07286 6.25168 6.28185 6.62639 6.76799 6.93292 7.22457 7.51217 8.83351 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.003496 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.934981 B = 8007.925231 C = 8519.949556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.048 0.952 4 O -0.585 6.585 5 C -0.075 4.075 6 C -0.099 4.099 7 C 0.058 3.942 8 N -0.542 5.542 9 C 0.075 3.925 10 H 0.119 0.881 11 C -0.170 4.170 12 C 0.503 3.497 13 O -0.579 6.579 14 N -0.609 5.609 15 C 0.076 3.924 16 C 0.226 3.774 17 C -0.534 4.534 18 H 0.026 0.974 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.274 1.274 24 H -0.237 1.237 25 C 0.055 3.945 26 C -0.106 4.106 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.391 0.609 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.015 0.985 44 H 0.268 0.732 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 -13.175 -8.315 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.045 3.955 3 H 0.066 0.934 4 O -0.394 6.394 5 C -0.093 4.093 6 C -0.137 4.137 7 C -0.069 4.069 8 N -0.267 5.267 9 C -0.037 4.037 10 H 0.137 0.863 11 C -0.229 4.229 12 C 0.291 3.709 13 O -0.459 6.459 14 N -0.341 5.341 15 C -0.066 4.066 16 C 0.103 3.897 17 C -0.573 4.573 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.772 3.228 22 H -0.204 1.204 23 H -0.199 1.199 24 H -0.160 1.160 25 C -0.071 4.071 26 C -0.143 4.143 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.240 0.760 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.628 -12.726 -8.361 24.842 hybrid contribution 0.806 0.164 -0.398 0.914 sum -18.822 -12.562 -8.759 24.265 Atomic orbital electron populations 1.22490 0.94638 1.02987 1.03523 1.21813 0.93913 0.94576 0.85170 0.93427 1.86490 1.77720 1.58241 1.16916 1.21156 0.94390 1.00120 0.93654 1.21440 0.96036 1.00157 0.96075 1.22122 0.99975 0.94916 0.89928 1.61656 1.07970 1.55974 1.01123 1.21605 0.90941 0.96258 0.94893 0.86338 1.22322 1.04040 0.92892 1.03621 1.21242 0.89891 0.77315 0.82466 1.90585 1.69555 1.47859 1.37886 1.47946 1.12418 1.63936 1.09779 1.22025 0.97629 0.99976 0.86956 1.19287 0.80158 0.93726 0.96517 1.21575 0.93006 0.95007 1.47718 0.95570 1.25878 1.02959 0.96028 0.94000 1.70059 1.26164 1.12464 1.49982 0.85689 0.78272 0.80406 0.78396 1.20422 1.19873 1.15999 1.22217 0.85206 1.00243 0.99470 1.21655 1.01065 0.99348 0.92269 0.91316 0.91897 0.90385 0.75972 0.90634 0.93920 0.91815 0.92442 0.93735 0.89867 0.88988 0.93022 0.90061 0.91623 0.89408 0.93166 0.96684 0.92297 0.92921 0.89595 0.92379 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 9.19 71.98 0.66 -1.50 16 2 C 0.10 1.85 3.16 30.59 0.10 1.95 16 3 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 4 O -0.59 -11.20 12.70 -148.98 -1.89 -13.09 16 5 C -0.07 -1.55 2.05 -10.71 -0.02 -1.57 16 6 C -0.10 -2.79 5.20 30.65 0.16 -2.63 16 7 C 0.06 1.77 4.17 86.33 0.36 2.13 16 8 N -0.54 -16.13 4.36 -875.50 -3.82 -19.95 16 9 C 0.07 2.17 1.93 44.17 0.09 2.26 16 10 H 0.12 2.95 6.23 -2.39 -0.01 2.94 16 11 C -0.17 -3.63 8.20 71.98 0.59 -3.04 16 12 C 0.50 21.10 6.84 87.66 0.60 21.70 16 13 O -0.58 -30.38 13.85 -3.03 -0.04 -30.43 16 14 N -0.61 -25.22 2.86 -851.13 -2.43 -27.66 16 15 C 0.08 2.16 9.36 127.77 1.20 3.36 16 16 C 0.23 11.30 4.23 85.63 0.36 11.67 16 17 C -0.53 -32.42 9.94 25.60 0.25 -32.17 16 18 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 19 C 0.01 0.55 5.47 84.65 0.46 1.01 16 20 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 21 Si 0.95 45.60 27.47 68.60 1.88 47.49 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 25 C 0.06 1.14 5.22 86.33 0.45 1.59 16 26 C -0.11 -1.97 4.96 30.65 0.15 -1.82 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.82 6.50 -2.39 -0.02 0.80 16 30 H 0.39 4.09 9.08 -74.06 -0.67 3.42 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.83 7.77 -2.39 -0.02 1.81 16 34 H 0.06 2.25 5.87 -2.38 -0.01 2.23 16 35 H 0.04 1.17 6.59 -2.39 -0.02 1.16 16 36 H 0.08 1.54 6.47 -2.39 -0.02 1.53 16 37 H 0.09 1.44 7.09 -2.38 -0.02 1.43 16 38 H 0.05 1.27 6.45 -2.38 -0.02 1.25 16 39 H 0.08 1.74 7.45 -2.39 -0.02 1.72 16 40 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 41 H 0.09 1.98 6.02 -2.39 -0.01 1.97 16 42 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 43 H 0.02 0.82 6.85 -2.39 -0.02 0.80 16 44 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 45 H 0.05 0.88 7.13 -2.39 -0.02 0.86 16 46 H 0.09 1.58 7.95 -2.39 -0.02 1.56 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.10 1.26 6.58 -2.39 -0.02 1.24 16 Total: -1.00 -82.96 360.31 -0.37 -83.34 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.22 Total: 18.34 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.41 Total: 2.92 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -5.95 Total: -108.58 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.93 Total: -43.51 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.49 kcal Total: -82.96 -0.37 -83.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304018452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.520 kcal (2) G-P(sol) polarization free energy of solvation -82.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds