Wall clock time and date at job start Tue Mar 31 2020 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46872 * 2 1 4 4 C 1.46502 * 119.99517 * 269.99459 * 3 2 1 5 5 C 1.50699 * 109.46985 * 270.00037 * 4 3 2 6 6 H 1.07994 * 120.00471 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00142 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47081 * 60.00030 * 9 7 5 11 11 H 1.48500 * 109.46827 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46990 * 299.99944 * 9 7 5 13 13 C 1.34778 * 120.00454 * 90.00112 * 3 2 1 14 14 O 1.21278 * 120.00255 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99435 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46515 * 180.02562 * 15 13 3 17 17 C 1.46847 * 111.00048 * 64.73761 * 16 15 13 18 18 C 1.53039 * 109.52394 * 174.15648 * 17 16 15 19 19 C 1.53116 * 109.31023 * 59.15751 * 18 17 16 20 20 C 1.53126 * 109.16066 * 302.40658 * 19 18 17 21 21 H 1.08997 * 109.50507 * 177.55866 * 20 19 18 22 22 C 1.53003 * 109.49835 * 297.63338 * 20 19 18 23 23 C 1.46839 * 111.00385 * 300.52224 * 16 15 13 24 24 H 1.09002 * 109.46134 * 65.82604 * 23 16 15 25 25 C 1.53002 * 109.46427 * 305.84930 * 23 16 15 26 26 O 1.42894 * 109.46935 * 67.65747 * 25 23 16 27 27 H 1.08995 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47342 * 300.00629 * 1 2 3 29 29 H 1.09003 * 109.46617 * 60.00390 * 1 2 3 30 30 H 1.08997 * 109.47342 * 239.99371 * 2 1 3 31 31 H 1.09003 * 109.46617 * 119.99610 * 2 1 3 32 32 H 1.08995 * 109.47481 * 30.00605 * 4 3 2 33 33 H 1.09008 * 109.46777 * 150.00553 * 4 3 2 34 34 H 0.97002 * 120.00475 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46896 * 60.00779 * 15 13 3 36 36 H 1.08999 * 109.47242 * 300.00304 * 15 13 3 37 37 H 1.09000 * 109.46044 * 54.13989 * 17 16 15 38 38 H 1.08995 * 109.45173 * 294.16478 * 17 16 15 39 39 H 1.09002 * 109.50441 * 179.11915 * 18 17 16 40 40 H 1.09005 * 109.50424 * 299.19865 * 18 17 16 41 41 H 1.09002 * 109.52271 * 62.27021 * 19 18 17 42 42 H 1.08996 * 109.52542 * 182.45609 * 19 18 17 43 43 H 1.08999 * 109.46597 * 179.83959 * 22 20 19 44 44 H 1.08995 * 109.47173 * 299.83673 * 22 20 19 45 45 H 1.09000 * 109.46865 * 59.84407 * 22 20 19 46 46 H 1.09002 * 109.46962 * 187.65692 * 25 23 16 47 47 H 1.09004 * 109.46934 * 307.65458 * 25 23 16 48 48 H 0.96705 * 113.99731 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1271 -3.6172 9 14 5.9136 2.0962 -3.4170 10 1 6.1404 0.6395 -3.5952 11 1 6.1614 2.7972 -4.7024 12 1 6.8413 2.6186 -2.3819 13 6 2.2430 2.0167 1.1672 14 8 2.6467 3.1603 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2067 3.5888 17 6 1.4023 3.3616 3.6080 18 6 1.6663 4.1983 4.8619 19 6 3.1231 4.6695 4.8587 20 6 4.0458 3.4495 4.7885 21 1 5.0834 3.7801 4.7423 22 6 3.8411 2.5821 6.0323 23 6 3.7128 2.6345 3.5368 24 1 3.8727 3.2485 2.6505 25 6 4.6190 1.4033 3.4744 26 8 4.4357 0.7400 2.2220 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6758 3.5175 -4.4431 35 1 2.6213 0.4188 2.5302 36 1 0.9432 1.0126 2.5298 37 1 0.3697 3.0125 3.6150 38 1 1.5733 3.9721 2.7214 39 1 1.0038 5.0639 4.8679 40 1 1.4817 3.5926 5.7491 41 1 3.2976 5.3078 3.9925 42 1 3.3270 5.2291 5.7715 43 1 4.4960 1.7124 5.9804 44 1 4.0784 3.1631 6.9234 45 1 2.8030 2.2530 6.0788 46 1 5.6595 1.7127 3.5728 47 1 4.3638 0.7228 4.2868 48 1 4.9800 -0.0518 2.1130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305262424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:23 Heat of formation + Delta-G solvation = -78.153451 kcal Electronic energy + Delta-G solvation = -27119.402679 eV Core-core repulsion = 23595.497384 eV Total energy + Delta-G solvation = -3523.905295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23722 -38.14255 -36.27019 -35.18386 -33.63245 -32.64881 -31.82657 -29.96097 -28.39127 -27.11055 -26.23671 -25.12803 -22.99993 -22.75606 -21.89537 -21.18607 -18.70329 -17.99271 -17.10707 -16.48323 -16.20257 -15.89110 -15.60938 -14.96874 -14.44949 -14.40015 -14.17384 -13.89147 -13.43967 -13.29373 -13.20469 -12.92480 -12.68114 -12.45264 -12.28712 -11.93078 -11.81133 -11.68072 -11.56142 -11.20910 -11.12912 -11.01568 -10.86322 -10.66553 -10.56324 -10.45315 -10.42345 -10.05131 -10.00772 -9.91302 -9.57587 -9.43257 -9.34305 -8.35283 -7.50008 -7.45864 -5.95486 -3.98616 3.35062 3.39454 3.42322 3.67685 4.15804 4.22983 4.43743 4.52133 4.86884 5.01136 5.15119 5.33691 5.36741 5.40105 5.48532 5.50046 5.55109 5.56044 5.59707 5.64845 5.73641 5.77826 5.84619 5.88943 5.95901 6.01710 6.10691 6.12451 6.15498 6.23397 6.28430 6.33078 6.37343 6.49916 6.56139 6.58881 6.71569 7.17095 7.34957 7.42512 7.56463 7.73715 7.88307 8.02962 8.36391 8.64969 9.03314 9.32748 9.65974 11.12587 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.005270 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.742661 B = 5311.454563 C = 5885.128811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.058 3.942 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.499 3.501 14 O -0.550 6.550 15 C 0.027 3.973 16 N -0.506 5.506 17 C 0.038 3.962 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.080 4.080 21 H 0.067 0.933 22 C -0.141 4.141 23 C 0.068 3.932 24 H 0.095 0.905 25 C 0.081 3.919 26 O -0.555 6.555 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.049 0.951 48 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -5.442 17.483 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.014 4.014 3 N -0.326 5.326 4 C 0.128 3.872 5 C -0.554 4.554 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.286 3.714 14 O -0.430 6.430 15 C -0.104 4.104 16 N -0.230 5.230 17 C -0.090 4.090 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.099 4.099 21 H 0.086 0.914 22 C -0.198 4.198 23 C -0.041 4.041 24 H 0.113 0.887 25 C 0.003 3.997 26 O -0.360 6.360 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.788 -4.495 17.649 18.424 hybrid contribution 1.520 -0.225 -1.173 1.933 sum -1.268 -4.720 16.475 17.185 Atomic orbital electron populations 1.22232 0.97239 1.01195 1.02081 1.21329 0.93029 0.84642 1.02440 1.48252 1.63587 1.12917 1.07892 1.19169 0.96034 0.93417 0.78622 1.21433 0.96964 1.31222 1.05770 0.92362 1.24939 0.97600 0.95192 0.96572 1.69930 1.35633 1.33861 1.14436 0.86593 0.85193 0.78107 0.77664 1.20372 1.21351 1.20385 1.21312 0.77372 0.86822 0.85904 1.90501 1.46869 1.18780 1.86889 1.22587 1.02053 0.98334 0.87413 1.62450 1.03053 1.17177 1.40307 1.22262 0.95622 0.92511 0.98579 1.21565 0.96239 0.98831 0.98389 1.21564 0.95116 0.96955 1.01497 1.21092 0.98914 0.95279 0.94636 0.91416 1.21830 1.02930 0.98938 0.96097 1.21962 0.87654 0.95289 0.99144 0.88730 1.22249 0.97594 0.94174 0.85678 1.86779 1.66883 1.44760 1.37573 0.92340 0.93223 0.92282 0.90441 0.91655 0.95587 0.94383 0.92886 0.85861 0.90128 0.91901 0.91592 0.92138 0.91541 0.91855 0.92252 0.93280 0.93815 0.91108 0.93867 0.93305 0.78355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.11 1.84 5.93 -4.04 -0.02 1.81 16 3 N -0.59 -12.85 2.46 -175.06 -0.43 -13.28 16 4 C 0.25 6.65 5.16 -5.19 -0.03 6.62 16 5 C -0.51 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 9 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.50 10.48 5.84 -10.98 -0.06 10.42 16 14 O -0.55 -13.73 11.20 5.56 0.06 -13.67 16 15 C 0.03 0.43 3.81 -4.97 -0.02 0.42 16 16 N -0.51 -7.69 3.98 -228.13 -0.91 -8.59 16 17 C 0.04 0.58 5.08 -3.83 -0.02 0.56 16 18 C -0.11 -1.40 5.74 -26.65 -0.15 -1.55 16 19 C -0.11 -1.44 5.51 -26.61 -0.15 -1.58 16 20 C -0.08 -1.03 2.74 -90.53 -0.25 -1.28 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.14 -1.52 8.39 37.16 0.31 -1.20 16 23 C 0.07 1.06 1.55 -67.73 -0.10 0.96 16 24 H 0.10 1.97 5.47 -51.93 -0.28 1.68 16 25 C 0.08 1.11 5.64 37.16 0.21 1.32 16 26 O -0.55 -8.55 9.20 -35.23 -0.32 -8.88 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.93 6.44 -51.93 -0.33 0.59 16 32 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.04 1.16 7.42 -51.92 -0.39 0.78 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.12 1.88 4.60 -51.93 -0.24 1.64 16 36 H 0.08 1.17 7.13 -51.93 -0.37 0.80 16 37 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.07 1.25 5.89 -51.93 -0.31 0.95 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.76 6.59 -51.93 -0.34 0.42 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.50 6.59 -51.93 -0.34 0.16 16 44 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.81 6.01 -51.93 -0.31 0.50 16 46 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 47 H 0.05 0.58 6.86 -51.93 -0.36 0.22 16 48 H 0.37 4.08 9.12 45.56 0.42 4.49 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -33.80 356.25 -8.26 -42.05 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.41 Total: 5.42 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.32 Total: 0.86 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.60 Total: -48.51 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.26 Total: -22.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.80 -8.26 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305262424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.099 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds