Wall clock time and date at job start Tue Mar 31 2020 04:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46872 * 2 1 4 4 C 1.46502 * 119.99517 * 269.99459 * 3 2 1 5 5 C 1.50699 * 109.46985 * 270.00037 * 4 3 2 6 6 H 1.07994 * 120.00471 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00142 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47081 * 60.00030 * 9 7 5 11 11 H 1.48500 * 109.46827 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46990 * 299.99944 * 9 7 5 13 13 C 1.34778 * 120.00454 * 90.00112 * 3 2 1 14 14 O 1.21278 * 120.00255 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99435 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46515 * 180.02562 * 15 13 3 17 17 C 1.46847 * 111.00048 * 64.73761 * 16 15 13 18 18 C 1.53039 * 109.52394 * 174.15648 * 17 16 15 19 19 C 1.53116 * 109.31023 * 59.15751 * 18 17 16 20 20 C 1.53126 * 109.16066 * 302.40658 * 19 18 17 21 21 H 1.08997 * 109.50507 * 177.55866 * 20 19 18 22 22 C 1.53003 * 109.49835 * 297.63338 * 20 19 18 23 23 C 1.46839 * 111.00385 * 300.52224 * 16 15 13 24 24 H 1.09002 * 109.46134 * 65.82604 * 23 16 15 25 25 C 1.53002 * 109.46427 * 305.84930 * 23 16 15 26 26 O 1.42894 * 109.46935 * 67.65747 * 25 23 16 27 27 H 1.08995 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47342 * 300.00629 * 1 2 3 29 29 H 1.09003 * 109.46617 * 60.00390 * 1 2 3 30 30 H 1.08997 * 109.47342 * 239.99371 * 2 1 3 31 31 H 1.09003 * 109.46617 * 119.99610 * 2 1 3 32 32 H 1.08995 * 109.47481 * 30.00605 * 4 3 2 33 33 H 1.09008 * 109.46777 * 150.00553 * 4 3 2 34 34 H 0.97002 * 120.00475 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46896 * 60.00779 * 15 13 3 36 36 H 1.08999 * 109.47242 * 300.00304 * 15 13 3 37 37 H 1.09000 * 109.46044 * 54.13989 * 17 16 15 38 38 H 1.08995 * 109.45173 * 294.16478 * 17 16 15 39 39 H 1.09002 * 109.50441 * 179.11915 * 18 17 16 40 40 H 1.09005 * 109.50424 * 299.19865 * 18 17 16 41 41 H 1.09002 * 109.52271 * 62.27021 * 19 18 17 42 42 H 1.08996 * 109.52542 * 182.45609 * 19 18 17 43 43 H 1.08999 * 109.46597 * 179.83959 * 22 20 19 44 44 H 1.08995 * 109.47173 * 299.83673 * 22 20 19 45 45 H 1.09000 * 109.46865 * 59.84407 * 22 20 19 46 46 H 1.09002 * 109.46962 * 187.65692 * 25 23 16 47 47 H 1.09004 * 109.46934 * 307.65458 * 25 23 16 48 48 H 0.96705 * 113.99731 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1271 -3.6172 9 14 5.9136 2.0962 -3.4170 10 1 6.1404 0.6395 -3.5952 11 1 6.1614 2.7972 -4.7024 12 1 6.8413 2.6186 -2.3819 13 6 2.2430 2.0167 1.1672 14 8 2.6467 3.1603 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2067 3.5888 17 6 1.4023 3.3616 3.6080 18 6 1.6663 4.1983 4.8619 19 6 3.1231 4.6695 4.8587 20 6 4.0458 3.4495 4.7885 21 1 5.0834 3.7801 4.7423 22 6 3.8411 2.5821 6.0323 23 6 3.7128 2.6345 3.5368 24 1 3.8727 3.2485 2.6505 25 6 4.6190 1.4033 3.4744 26 8 4.4357 0.7400 2.2220 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6758 3.5175 -4.4431 35 1 2.6213 0.4188 2.5302 36 1 0.9432 1.0126 2.5298 37 1 0.3697 3.0125 3.6150 38 1 1.5733 3.9721 2.7214 39 1 1.0038 5.0639 4.8679 40 1 1.4817 3.5926 5.7491 41 1 3.2976 5.3078 3.9925 42 1 3.3270 5.2291 5.7715 43 1 4.4960 1.7124 5.9804 44 1 4.0784 3.1631 6.9234 45 1 2.8030 2.2530 6.0788 46 1 5.6595 1.7127 3.5728 47 1 4.3638 0.7228 4.2868 48 1 4.9800 -0.0518 2.1130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305262424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:22 Heat of formation + Delta-G solvation = -103.237550 kcal Electronic energy + Delta-G solvation = -27120.490407 eV Core-core repulsion = 23595.497384 eV Total energy + Delta-G solvation = -3524.993023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58909 -39.61235 -37.40665 -36.84437 -35.04915 -34.65234 -32.93300 -31.56114 -29.91411 -28.47486 -27.60712 -26.37121 -24.84243 -24.08707 -23.22020 -22.41549 -20.04584 -19.44645 -18.58410 -18.23593 -17.82910 -17.27927 -16.90131 -16.61139 -16.02811 -15.87107 -15.51720 -15.16122 -14.66209 -14.61943 -14.50591 -14.35955 -13.94644 -13.88471 -13.63237 -13.49652 -13.22669 -13.07649 -12.91814 -12.67831 -12.64575 -12.50141 -12.34088 -12.19045 -12.08355 -11.85104 -11.79155 -11.63068 -11.47362 -11.08834 -11.04807 -10.90507 -10.63829 -10.60696 -9.28065 -8.96101 -8.19940 -6.34190 1.32898 1.37989 1.45178 2.05087 2.36052 2.59663 2.97888 3.08193 3.39696 3.81532 3.91778 3.99822 4.11779 4.21133 4.31304 4.39804 4.43323 4.46737 4.51887 4.56604 4.57264 4.69251 4.75805 4.78771 4.87551 4.94251 4.97436 5.01452 5.06014 5.07090 5.11606 5.14316 5.23929 5.25697 5.31433 5.36570 5.40521 5.49173 5.63436 5.68390 5.95657 6.06534 6.12689 6.17100 6.74983 6.96326 6.99094 7.32297 7.69615 8.86452 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.005270 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.742661 B = 5311.454563 C = 5885.128811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.266 3.734 5 C -0.529 4.529 6 H 0.054 0.946 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.491 3.509 14 O -0.598 6.598 15 C 0.039 3.961 16 N -0.487 5.487 17 C 0.036 3.964 18 C -0.105 4.105 19 C -0.115 4.115 20 C -0.079 4.079 21 H 0.068 0.932 22 C -0.131 4.131 23 C 0.065 3.935 24 H 0.035 0.965 25 C 0.084 3.916 26 O -0.583 6.583 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.012 0.988 33 H -0.014 1.014 34 H 0.265 0.735 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.018 0.982 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.030 0.970 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.079 0.921 48 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -7.874 20.180 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.144 3.856 5 C -0.567 4.567 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.280 3.720 14 O -0.480 6.480 15 C -0.092 4.092 16 N -0.210 5.210 17 C -0.092 4.092 18 C -0.143 4.143 19 C -0.153 4.153 20 C -0.098 4.098 21 H 0.086 0.914 22 C -0.188 4.188 23 C -0.044 4.044 24 H 0.053 0.947 25 C 0.006 3.994 26 O -0.391 6.391 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.030 0.970 33 H 0.004 0.996 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.301 -6.979 20.368 21.654 hybrid contribution 1.339 0.582 -2.027 2.498 sum -0.963 -6.397 18.341 19.449 Atomic orbital electron populations 1.22159 0.95011 1.03392 1.01293 1.21632 0.94831 0.81816 1.03511 1.48302 1.64052 1.14780 1.06243 1.18560 0.95128 0.90941 0.80987 1.21669 0.97757 1.31313 1.06007 0.92789 1.25891 1.02349 0.94694 0.96588 1.70066 1.37837 1.34647 1.14876 0.85470 0.79094 0.79085 0.77121 1.18208 1.20492 1.20664 1.22338 0.76074 0.86400 0.87139 1.90518 1.48667 1.21168 1.87669 1.22688 1.03776 0.98310 0.84396 1.62581 1.02915 1.16763 1.38733 1.22290 0.96366 0.92394 0.98167 1.21542 0.96175 0.99010 0.97526 1.21587 0.95526 0.96894 1.01260 1.21106 0.98904 0.95280 0.94513 0.91356 1.21752 1.02982 0.98944 0.95130 1.21941 0.88347 0.95878 0.98203 0.94691 1.22291 0.97406 0.93774 0.85899 1.86722 1.67758 1.45971 1.38670 0.88545 0.92396 0.94706 0.91590 0.88266 0.96952 0.99637 0.92641 0.84094 0.87767 0.90627 0.96334 0.91226 0.89278 0.95110 0.89657 0.92284 0.92015 0.91350 0.93303 0.90321 0.76253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 10.24 71.98 0.74 -3.53 16 2 C 0.10 3.40 5.93 86.38 0.51 3.91 16 3 N -0.60 -26.88 2.46 -826.14 -2.03 -28.90 16 4 C 0.27 15.20 5.16 85.63 0.44 15.64 16 5 C -0.53 -31.78 9.39 25.60 0.24 -31.54 16 6 H 0.05 3.22 7.81 -2.91 -0.02 3.19 16 7 C 0.00 0.16 5.46 84.66 0.46 0.63 16 8 N -0.93 -58.95 13.29 21.45 0.28 -58.66 16 9 Si 0.97 46.63 29.54 68.60 2.03 48.66 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 C 0.49 21.32 5.84 87.66 0.51 21.83 16 14 O -0.60 -32.03 11.20 -3.02 -0.03 -32.07 16 15 C 0.04 1.21 3.81 85.56 0.33 1.53 16 16 N -0.49 -14.26 3.98 -875.66 -3.48 -17.74 16 17 C 0.04 1.09 5.08 86.33 0.44 1.53 16 18 C -0.11 -2.47 5.74 30.65 0.18 -2.30 16 19 C -0.12 -2.84 5.51 30.68 0.17 -2.67 16 20 C -0.08 -1.93 2.74 -10.74 -0.03 -1.96 16 21 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 22 C -0.13 -2.35 8.39 71.98 0.60 -1.74 16 23 C 0.06 2.03 1.55 44.94 0.07 2.10 16 24 H 0.04 1.55 5.47 -2.39 -0.01 1.54 16 25 C 0.08 2.16 5.64 71.98 0.41 2.56 16 26 O -0.58 -17.29 9.20 -148.98 -1.37 -18.67 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.44 7.22 -2.39 -0.02 1.43 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 31 H 0.10 2.54 6.44 -2.39 -0.02 2.53 16 32 H 0.01 0.73 8.07 -2.39 -0.02 0.71 16 33 H -0.01 -0.97 7.42 -2.38 -0.02 -0.98 16 34 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.14 3.91 4.60 -2.39 -0.01 3.90 16 36 H 0.10 2.74 7.13 -2.39 -0.02 2.73 16 37 H 0.08 2.06 8.08 -2.39 -0.02 2.04 16 38 H 0.02 0.75 5.89 -2.39 -0.01 0.74 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.74 6.59 -2.38 -0.02 1.73 16 41 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 0.95 6.59 -2.39 -0.02 0.94 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.28 6.01 -2.39 -0.01 1.27 16 46 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 47 H 0.08 1.57 6.86 -2.38 -0.02 1.56 16 48 H 0.39 7.83 9.12 -74.05 -0.68 7.15 16 Total: -1.00 -79.85 356.25 0.73 -79.12 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.27 Total: 22.27 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.07 Total: 5.99 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -5.23 Total: -105.31 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.40 Total: -50.73 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -79.85 0.73 -79.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305262424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.118 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds