Wall clock time and date at job start Tue Mar 31 2020 05:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46987 * 2 1 4 4 C 1.52994 * 109.47007 * 239.99631 * 2 1 3 5 5 N 1.46900 * 109.47109 * 184.99877 * 4 2 1 6 6 C 1.46950 * 111.00153 * 293.80288 * 5 4 2 7 7 C 1.53052 * 109.36550 * 176.80852 * 6 5 4 8 8 N 1.46955 * 109.36409 * 58.40236 * 7 6 5 9 9 C 1.46904 * 111.00035 * 176.81302 * 8 7 6 10 10 C 1.46967 * 110.87814 * 300.67789 * 8 7 6 11 11 C 1.46953 * 111.00371 * 169.99905 * 5 4 2 12 12 N 1.46496 * 109.46722 * 119.99519 * 2 1 3 13 13 C 1.37337 * 120.00248 * 274.99973 * 12 2 1 14 14 O 1.35086 * 120.00179 * 0.02562 * 13 12 2 15 15 N 1.30104 * 119.99736 * 180.02562 * 13 12 2 16 16 C 1.46507 * 119.99613 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46841 * 114.99652 * 16 15 13 18 18 C 1.50700 * 109.46823 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00220 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99875 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99799 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99890 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47190 * 89.99518 * 22 20 18 24 24 H 1.48498 * 109.46728 * 209.99729 * 22 20 18 25 25 H 1.48505 * 109.46731 * 329.99711 * 22 20 18 26 26 H 1.09001 * 109.47129 * 300.00391 * 1 2 3 27 27 H 1.09002 * 109.46998 * 60.00126 * 1 2 3 28 28 H 1.08994 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47428 * 304.99990 * 4 2 1 30 30 H 1.09006 * 109.47026 * 65.00278 * 4 2 1 31 31 H 1.09001 * 109.49134 * 296.77330 * 6 5 4 32 32 H 1.09000 * 109.49345 * 56.84251 * 6 5 4 33 33 H 1.09006 * 109.49045 * 298.43272 * 7 6 5 34 34 H 1.09004 * 109.50974 * 178.37726 * 7 6 5 35 35 H 1.08997 * 109.46906 * 183.79399 * 9 8 7 36 36 H 1.08997 * 109.47256 * 303.79790 * 9 8 7 37 37 H 1.08998 * 109.46776 * 63.79731 * 9 8 7 38 38 H 1.09000 * 109.48589 * 299.35613 * 10 8 7 39 39 H 1.08998 * 109.50555 * 179.29938 * 10 8 7 40 40 H 1.09001 * 109.48785 * 303.16301 * 11 5 4 41 41 H 1.09003 * 109.48418 * 63.19921 * 11 5 4 42 42 H 0.96999 * 119.99691 * 95.00010 * 12 2 1 43 43 H 0.96702 * 113.99983 * 359.97438 * 14 13 12 44 44 H 1.09001 * 109.46565 * 234.99656 * 16 15 13 45 45 H 1.08998 * 109.47082 * 355.00042 * 16 15 13 46 46 H 1.09001 * 109.47500 * 299.99960 * 17 16 15 47 47 H 1.08998 * 109.46963 * 60.00318 * 17 16 15 48 48 H 0.97005 * 119.99550 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.1314 0.4994 -1.2757 7 6 5.6481 0.3536 -1.1311 8 7 6.1550 -0.5345 -2.1865 9 6 7.6191 -0.6399 -2.1276 10 6 5.5276 -1.8607 -2.1012 11 6 4.0110 -1.7148 -2.2457 12 7 2.0183 -0.6905 1.1962 13 6 2.1494 -0.0053 2.3792 14 8 1.8277 1.3053 2.4400 15 7 2.5835 -0.6186 3.4414 16 6 2.7239 0.1125 4.7032 17 6 1.7461 -0.4560 5.7335 18 6 1.8910 0.2956 7.0317 19 1 2.6084 1.0987 7.1135 20 6 1.1076 -0.0421 8.1149 21 7 0.2336 -1.0197 8.0150 22 14 1.2866 0.8900 9.7238 23 1 0.3594 2.0500 9.7298 24 1 0.9588 -0.0116 10.8573 25 1 2.6841 1.3727 9.8633 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -1.7199 -1.2950 30 1 1.7517 -0.1584 -2.1369 31 1 3.8998 0.9499 -2.2408 32 1 3.7494 1.1346 -0.4765 33 1 5.8812 -0.0717 -0.1549 34 1 6.1183 1.3327 -1.2228 35 1 7.9732 -1.2483 -2.9597 36 1 8.0580 0.3557 -2.1928 37 1 7.9122 -1.1054 -1.1866 38 1 5.7593 -2.3111 -1.1360 39 1 5.9096 -2.4962 -2.9001 40 1 3.5411 -2.6940 -2.1538 41 1 3.7776 -1.2897 -3.2219 42 1 2.2489 -1.6317 1.1527 43 1 1.5156 1.6729 1.6018 44 1 3.7438 0.0064 5.0730 45 1 2.5051 1.1675 4.5382 46 1 0.7262 -0.3500 5.3637 47 1 1.9649 -1.5110 5.8986 48 1 -0.3178 -1.2570 8.7771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330865543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:12 Heat of formation + Delta-G solvation = -40.913395 kcal Electronic energy + Delta-G solvation = -24857.245629 eV Core-core repulsion = 21367.247935 eV Total energy + Delta-G solvation = -3489.997694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91063 -40.03313 -37.57125 -36.22885 -35.43740 -34.62024 -32.40449 -31.89890 -30.41559 -29.49395 -26.67644 -26.22456 -24.75659 -24.07438 -23.21370 -21.79665 -21.57505 -20.73319 -19.86396 -18.62808 -17.43934 -17.06143 -16.54875 -16.23695 -16.03394 -15.91288 -15.75854 -15.55999 -15.44538 -15.09602 -14.91336 -14.56717 -14.28564 -13.95056 -13.68990 -13.46744 -13.41857 -13.19620 -12.94364 -12.91644 -12.65888 -12.59862 -12.53977 -12.24659 -12.19841 -12.16012 -11.80654 -11.72328 -11.48184 -11.36320 -10.93947 -10.60381 -10.20583 -9.44313 -9.21435 -8.84252 -8.19727 -6.33649 1.38146 1.42026 1.53470 1.92197 2.09577 2.41653 2.85534 2.96601 3.10454 3.11814 3.65532 3.88162 4.03250 4.11805 4.15610 4.23803 4.32192 4.37353 4.43629 4.50420 4.59831 4.61374 4.65084 4.69617 4.78441 4.82245 4.83886 4.88859 4.90039 4.94497 4.97383 5.01295 5.07551 5.13303 5.33702 5.43992 5.53697 5.67510 5.82247 5.93584 5.95351 6.14136 6.16940 6.21450 6.49507 6.81899 7.06158 7.34746 7.55672 8.92370 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.002805 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.922595 B = 9979.901800 C =10733.431241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.085 0.915 4 C 0.058 3.942 5 N -0.550 5.550 6 C 0.063 3.937 7 C 0.056 3.944 8 N -0.549 5.549 9 C 0.024 3.976 10 C 0.054 3.946 11 C 0.063 3.937 12 N -0.704 5.704 13 C 0.559 3.441 14 O -0.521 6.521 15 N -0.646 5.646 16 C 0.100 3.900 17 C 0.045 3.955 18 C -0.546 4.546 19 H 0.060 0.940 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.019 0.981 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.018 0.982 38 H 0.025 0.975 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.418 0.582 43 H 0.403 0.597 44 H 0.048 0.952 45 H 0.030 0.970 46 H -0.023 1.023 47 H -0.015 1.015 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 2.647 -30.084 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.039 3.961 3 H 0.103 0.897 4 C -0.070 4.070 5 N -0.276 5.276 6 C -0.065 4.065 7 C -0.073 4.073 8 N -0.274 5.274 9 C -0.124 4.124 10 C -0.074 4.074 11 C -0.065 4.065 12 N -0.355 5.355 13 C 0.246 3.754 14 O -0.317 6.317 15 N -0.397 5.397 16 C -0.030 4.030 17 C 0.007 3.993 18 C -0.584 4.584 19 H 0.079 0.921 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.255 0.745 43 H 0.260 0.740 44 H 0.067 0.933 45 H 0.049 0.951 46 H -0.005 1.005 47 H 0.003 0.997 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.147 2.098 -29.204 30.139 hybrid contribution -0.285 0.684 0.671 1.000 sum 6.862 2.781 -28.533 29.478 Atomic orbital electron populations 1.22337 0.94133 1.03397 1.03022 1.21202 0.94101 0.96882 0.83929 0.89744 1.22328 0.86913 1.02205 0.95538 1.62047 1.05757 1.11775 1.47978 1.22096 0.93253 0.90464 1.00712 1.22149 0.95524 0.97453 0.92131 1.62269 1.06589 1.11867 1.46694 1.22392 0.86818 1.02698 1.00505 1.22219 0.94613 0.90076 1.00484 1.22137 0.94068 0.97632 0.92689 1.44357 1.72647 1.13743 1.04778 1.20894 0.87511 0.78516 0.88515 1.85255 1.82373 1.23117 1.40927 1.72589 1.34506 1.32974 0.99617 1.21313 0.98102 0.94844 0.88729 1.18865 0.92657 0.94749 0.93028 1.21638 1.21270 1.17993 0.97538 0.92128 1.26103 0.94529 0.96126 1.03290 1.70146 1.24260 1.30668 1.32423 0.85311 0.79097 0.78236 0.77541 1.19406 1.20293 1.18569 0.93611 0.88604 0.91881 0.88912 0.90882 0.93203 0.90701 0.96277 0.89702 0.90147 0.90759 0.96381 0.95667 0.88964 0.89130 0.93460 0.74468 0.73959 0.93342 0.95142 1.00502 0.99666 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.40 71.98 0.68 -1.51 16 2 C 0.14 2.01 2.07 44.99 0.09 2.10 16 3 H 0.08 0.99 5.21 -2.39 -0.01 0.98 16 4 C 0.06 0.62 4.51 86.30 0.39 1.01 16 5 N -0.55 -8.05 4.43 -895.75 -3.97 -12.03 16 6 C 0.06 0.94 5.41 86.31 0.47 1.41 16 7 C 0.06 0.98 5.62 86.31 0.49 1.46 16 8 N -0.55 -8.85 4.97 -921.91 -4.58 -13.43 16 9 C 0.02 0.33 9.60 127.69 1.23 1.56 16 10 C 0.05 0.81 5.62 86.31 0.49 1.30 16 11 C 0.06 0.80 5.61 86.31 0.48 1.28 16 12 N -0.70 -16.91 4.90 -441.60 -2.17 -19.08 16 13 C 0.56 19.58 8.76 179.63 1.57 21.15 16 14 O -0.52 -16.73 11.99 -83.61 -1.00 -17.73 16 15 N -0.65 -29.72 10.61 -465.97 -4.94 -34.67 16 16 C 0.10 5.25 6.27 86.38 0.54 5.80 16 17 C 0.04 2.78 5.30 29.85 0.16 2.94 16 18 C -0.55 -34.52 9.11 25.60 0.23 -34.29 16 19 H 0.06 3.66 7.74 -2.91 -0.02 3.63 16 20 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 21 N -0.93 -61.12 13.29 21.45 0.28 -60.84 16 22 Si 0.98 46.97 29.54 68.60 2.03 48.99 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 26 H 0.04 0.79 7.91 -2.39 -0.02 0.77 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.90 8.03 -2.39 -0.02 0.88 16 30 H 0.07 0.52 8.12 -2.38 -0.02 0.50 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.16 6.45 -2.39 -0.02 1.15 16 33 H 0.02 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 37 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 0.98 8.07 -2.39 -0.02 0.96 16 41 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.42 10.56 8.72 -92.71 -0.81 9.75 16 43 H 0.40 7.94 6.15 -74.06 -0.46 7.48 16 44 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.03 1.56 6.74 -2.39 -0.02 1.55 16 46 H -0.02 -1.58 8.14 -2.39 -0.02 -1.60 16 47 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 48 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 Total: -1.00 -81.23 379.20 -7.40 -88.63 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.33 Total: 15.68 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 7.28 Total: 4.47 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -15.37 Total: -140.05 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.00 Total: -17.73 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -81.23 -7.40 -88.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330865543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.719 kcal (2) G-P(sol) polarization free energy of solvation -81.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds