Wall clock time and date at job start Tue Mar 31 2020 03:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.90701 * 2 1 4 4 C 1.53989 * 110.08204 * 121.21300 * 2 1 3 5 5 H 1.08999 * 110.31211 * 239.68272 * 4 2 1 6 6 N 1.46898 * 110.31172 * 1.75316 * 4 2 1 7 7 C 1.47013 * 110.99930 * 280.33574 * 6 4 2 8 8 C 1.53099 * 109.25691 * 177.60501 * 7 6 4 9 9 O 1.43021 * 109.25607 * 56.84871 * 8 7 6 10 10 C 1.43013 * 113.73928 * 301.32696 * 9 8 7 11 11 C 1.47018 * 111.00316 * 156.69913 * 6 4 2 12 12 C 1.54602 * 105.14093 * 120.66960 * 4 2 1 13 13 C 1.54942 * 102.92021 * 21.95747 * 12 4 2 14 14 N 1.47907 * 109.91687 * 238.89952 * 2 1 3 15 15 C 1.46902 * 110.99696 * 94.60299 * 14 2 1 16 16 C 1.53002 * 109.47010 * 169.99809 * 15 14 2 17 17 O 1.42898 * 109.46865 * 65.00175 * 16 15 14 18 18 C 1.42902 * 114.00101 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47472 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99518 * 359.72245 * 19 18 17 21 21 C 1.37873 * 120.00032 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00147 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47383 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47079 * 119.99879 * 23 21 19 26 26 H 1.48502 * 109.46942 * 239.99742 * 23 21 19 27 27 H 1.08998 * 109.47074 * 195.23329 * 1 2 3 28 28 H 1.08995 * 109.47337 * 315.22999 * 1 2 3 29 29 H 1.09000 * 109.47173 * 75.23263 * 1 2 3 30 30 H 1.09000 * 109.50408 * 297.53788 * 7 6 4 31 31 H 1.08998 * 109.50516 * 57.67268 * 7 6 4 32 32 H 1.09001 * 109.50433 * 296.91487 * 8 7 6 33 33 H 1.08995 * 109.54214 * 176.80257 * 8 7 6 34 34 H 1.09005 * 109.50537 * 298.74098 * 10 9 8 35 35 H 1.08996 * 109.50425 * 178.60856 * 10 9 8 36 36 H 1.09007 * 109.50305 * 302.32834 * 11 6 4 37 37 H 1.08999 * 109.50677 * 62.41014 * 11 6 4 38 38 H 1.09000 * 110.72493 * 140.31298 * 12 4 2 39 39 H 1.08997 * 110.72186 * 263.41962 * 12 4 2 40 40 H 1.08999 * 110.66632 * 204.15197 * 13 12 4 41 41 H 1.09001 * 110.66753 * 81.01818 * 13 12 4 42 42 H 1.09008 * 109.47114 * 50.00395 * 15 14 2 43 43 H 1.08997 * 109.47522 * 289.99757 * 15 14 2 44 44 H 1.09000 * 109.47171 * 305.00064 * 16 15 14 45 45 H 1.09006 * 109.47213 * 185.00028 * 16 15 14 46 46 H 1.08996 * 109.46910 * 59.99781 * 18 17 16 47 47 H 1.09007 * 109.46881 * 299.99814 * 18 17 16 48 48 H 0.97002 * 119.99880 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0587 -0.7495 1.2369 5 1 2.6733 -0.0871 1.8466 6 7 0.9406 -1.2787 2.0290 7 6 0.3412 -0.2267 2.8629 8 6 -0.8543 -0.8056 3.6242 9 8 -0.4222 -1.9288 4.3971 10 6 0.1660 -2.9728 3.6165 11 6 1.3717 -2.4158 2.8552 12 6 2.9123 -1.9084 0.6725 13 6 3.2708 -1.4132 -0.7512 14 7 2.0338 -0.7183 -1.1907 15 6 2.3166 0.2160 -2.2885 16 6 3.0630 -0.5187 -3.4039 17 8 2.2120 -1.5185 -3.9681 18 6 2.8160 -2.2667 -5.0252 19 6 1.8346 -3.2863 -5.5434 20 1 0.8499 -3.3588 -5.1059 21 6 2.1960 -4.1305 -6.5718 22 7 3.3970 -4.0458 -7.1009 23 14 0.9797 -5.3947 -7.2135 24 1 -0.2929 -5.2864 -6.4559 25 1 0.7202 -5.1451 -8.6542 26 1 1.5447 -6.7572 -7.0411 27 1 -0.3633 -0.9915 0.2700 28 1 -0.3634 0.7295 0.7237 29 1 -0.3633 0.2619 -0.9937 30 1 1.0818 0.1407 3.5732 31 1 0.0059 0.5937 2.2284 32 1 -1.6179 -1.1242 2.9147 33 1 -1.2675 -0.0452 4.2868 34 1 -0.5681 -3.3543 2.9068 35 1 0.4913 -3.7793 4.2736 36 1 1.7888 -3.1933 2.2150 37 1 2.1294 -2.0835 3.5648 38 1 3.8131 -2.0503 1.2697 39 1 2.3313 -2.8295 0.6286 40 1 3.4927 -2.2552 -1.4068 41 1 4.1105 -0.7190 -0.7170 42 1 2.9322 1.0359 -1.9183 43 1 1.3794 0.6127 -2.6786 44 1 3.9559 -0.9907 -2.9940 45 1 3.3509 0.1926 -4.1782 46 1 3.7039 -2.7749 -4.6493 47 1 3.0983 -1.5915 -5.8330 48 1 3.6512 -4.6395 -7.8246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339205640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:29 Heat of formation + Delta-G solvation = -61.668070 kcal Electronic energy + Delta-G solvation = -25509.248959 eV Core-core repulsion = 21986.058524 eV Total energy + Delta-G solvation = -3523.190435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43711 -38.74812 -36.71983 -35.33461 -32.74682 -32.22983 -31.51537 -30.62763 -28.26285 -27.08842 -26.11498 -24.81538 -24.24969 -22.39976 -22.17598 -20.93219 -20.16696 -19.52314 -16.87563 -16.48440 -16.29618 -16.15182 -15.63578 -15.60742 -15.16783 -15.13048 -14.82459 -14.34614 -14.19845 -14.01716 -13.54036 -13.27268 -12.93649 -12.71082 -12.50165 -12.12394 -11.96017 -11.84687 -11.56326 -11.48038 -11.21544 -11.11890 -11.07827 -10.83222 -10.74957 -10.69319 -10.65922 -10.51356 -10.33479 -9.93636 -9.80714 -9.02807 -8.76202 -8.51524 -8.12634 -8.07722 -6.06456 -4.07095 3.32567 3.38913 3.46459 3.47275 3.65828 4.06544 4.37714 4.41238 4.64351 4.70027 4.76411 4.91725 4.92045 4.96984 5.02555 5.09479 5.19457 5.27384 5.30240 5.33849 5.38544 5.48451 5.49606 5.53592 5.61363 5.65777 5.70984 5.73908 5.77720 5.91890 5.97907 6.05183 6.11462 6.20208 6.23307 6.37012 6.65168 6.76273 6.84583 6.90750 7.14030 7.17543 7.32061 7.47764 7.86276 8.21760 8.66338 9.08330 9.57803 11.05318 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003173 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.339634 B = 8822.674025 C = 9504.887500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 H 0.042 0.958 4 C 0.079 3.921 5 H 0.047 0.953 6 N -0.517 5.517 7 C 0.007 3.993 8 C 0.064 3.936 9 O -0.389 6.389 10 C 0.064 3.936 11 C 0.012 3.988 12 C -0.122 4.122 13 C 0.038 3.962 14 N -0.490 5.490 15 C 0.053 3.947 16 C 0.063 3.937 17 O -0.379 6.379 18 C 0.194 3.806 19 C -0.509 4.509 20 H 0.068 0.932 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 8.564 22.076 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.037 4.037 3 H 0.060 0.940 4 C -0.030 4.030 5 H 0.064 0.936 6 N -0.242 5.242 7 C -0.120 4.120 8 C -0.013 4.013 9 O -0.308 6.308 10 C -0.013 4.013 11 C -0.116 4.116 12 C -0.160 4.160 13 C -0.090 4.090 14 N -0.214 5.214 15 C -0.075 4.075 16 C -0.015 4.015 17 O -0.298 6.298 18 C 0.120 3.880 19 C -0.547 4.547 20 H 0.086 0.914 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.734 3.266 24 H -0.194 1.194 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.611 7.908 21.670 23.349 hybrid contribution 1.272 0.402 -0.102 1.338 sum -2.339 8.310 21.568 23.232 Atomic orbital electron populations 1.21778 0.93339 1.03080 1.00385 1.22402 0.97523 0.94556 0.89250 0.93964 1.22525 0.90319 0.96093 0.94084 0.93551 1.62314 1.30206 1.07896 1.23788 1.23082 0.97438 0.95481 0.96041 1.22647 0.95318 0.88541 0.94762 1.87964 1.79674 1.28659 1.34477 1.22681 0.94209 0.89767 0.94675 1.22894 0.97347 0.95262 0.96056 1.22739 0.98669 0.98803 0.95834 1.23185 0.91384 0.99067 0.95389 1.64740 1.26109 1.25781 1.04815 1.22330 1.00502 0.92899 0.91738 1.22294 0.93265 0.91796 0.94108 1.87970 1.39714 1.48921 1.53191 1.20178 0.93969 0.89997 0.83901 1.21111 1.00412 1.16192 1.16963 0.91413 1.24949 0.95674 0.97671 0.96324 1.69978 1.18957 1.39074 1.26064 0.86298 0.81133 0.80662 0.78524 1.19408 1.20928 1.20904 0.89902 0.93494 0.93043 0.94434 0.88527 0.92040 0.88720 0.91987 0.88604 0.88698 0.94330 0.91437 0.89183 0.88966 0.94359 0.94527 0.89955 0.94579 0.94370 0.98019 0.98049 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.27 37.16 0.31 -1.24 16 2 C 0.07 0.89 3.01 -66.64 -0.20 0.69 16 3 H 0.04 0.50 7.57 -51.93 -0.39 0.10 16 4 C 0.08 0.86 2.85 -66.36 -0.19 0.67 16 5 H 0.05 0.49 8.00 -51.93 -0.42 0.07 16 6 N -0.52 -5.33 2.91 -224.71 -0.65 -5.98 16 7 C 0.01 0.07 5.03 -3.71 -0.02 0.05 16 8 C 0.06 0.55 7.01 37.21 0.26 0.82 16 9 O -0.39 -4.09 10.83 -35.23 -0.38 -4.47 16 10 C 0.06 0.58 7.01 37.20 0.26 0.84 16 11 C 0.01 0.12 5.09 -3.71 -0.02 0.10 16 12 C -0.12 -1.41 5.48 -24.86 -0.14 -1.55 16 13 C 0.04 0.53 5.09 -1.90 -0.01 0.52 16 14 N -0.49 -7.52 4.98 -222.57 -1.11 -8.62 16 15 C 0.05 0.83 5.41 -3.82 -0.02 0.81 16 16 C 0.06 1.20 5.76 37.16 0.21 1.41 16 17 O -0.38 -9.34 10.27 -35.23 -0.36 -9.70 16 18 C 0.19 5.42 5.69 36.01 0.20 5.62 16 19 C -0.51 -15.26 9.43 -34.44 -0.32 -15.58 16 20 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 21 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 23 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.08 1.12 6.94 -51.93 -0.36 0.76 16 28 H 0.05 0.46 5.65 -51.93 -0.29 0.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.80 5.07 -51.93 -0.26 0.54 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.88 5.80 -51.92 -0.30 0.58 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.12 6.38 -51.93 -0.33 0.79 16 40 H 0.09 1.51 7.56 -51.93 -0.39 1.12 16 41 H 0.04 0.49 8.01 -51.93 -0.42 0.07 16 42 H 0.04 0.48 7.81 -51.92 -0.41 0.07 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.04 0.66 6.52 -51.93 -0.34 0.32 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 47 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -32.46 362.83 -9.62 -42.08 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -8.53 Total: -4.01 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 0.23 Total: -5.36 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -1.02 Total: -41.17 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.74 Total: -14.17 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.46 -9.62 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339205640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.593 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds