Wall clock time and date at job start Tue Mar 31 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.90701 * 2 1 4 4 C 1.53989 * 110.08204 * 121.21300 * 2 1 3 5 5 H 1.08999 * 110.31211 * 239.68272 * 4 2 1 6 6 N 1.46898 * 110.31172 * 1.75316 * 4 2 1 7 7 C 1.47013 * 110.99930 * 280.33574 * 6 4 2 8 8 C 1.53099 * 109.25691 * 177.60501 * 7 6 4 9 9 O 1.43021 * 109.25607 * 56.84871 * 8 7 6 10 10 C 1.43013 * 113.73928 * 301.32696 * 9 8 7 11 11 C 1.47018 * 111.00316 * 156.69913 * 6 4 2 12 12 C 1.54602 * 105.14093 * 120.66960 * 4 2 1 13 13 C 1.54942 * 102.92021 * 21.95747 * 12 4 2 14 14 N 1.47907 * 109.91687 * 238.89952 * 2 1 3 15 15 C 1.46902 * 110.99696 * 94.60299 * 14 2 1 16 16 C 1.53002 * 109.47010 * 169.99809 * 15 14 2 17 17 O 1.42898 * 109.46865 * 65.00175 * 16 15 14 18 18 C 1.42902 * 114.00101 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47472 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99518 * 359.72245 * 19 18 17 21 21 C 1.37873 * 120.00032 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00147 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47383 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47079 * 119.99879 * 23 21 19 26 26 H 1.48502 * 109.46942 * 239.99742 * 23 21 19 27 27 H 1.08998 * 109.47074 * 195.23329 * 1 2 3 28 28 H 1.08995 * 109.47337 * 315.22999 * 1 2 3 29 29 H 1.09000 * 109.47173 * 75.23263 * 1 2 3 30 30 H 1.09000 * 109.50408 * 297.53788 * 7 6 4 31 31 H 1.08998 * 109.50516 * 57.67268 * 7 6 4 32 32 H 1.09001 * 109.50433 * 296.91487 * 8 7 6 33 33 H 1.08995 * 109.54214 * 176.80257 * 8 7 6 34 34 H 1.09005 * 109.50537 * 298.74098 * 10 9 8 35 35 H 1.08996 * 109.50425 * 178.60856 * 10 9 8 36 36 H 1.09007 * 109.50305 * 302.32834 * 11 6 4 37 37 H 1.08999 * 109.50677 * 62.41014 * 11 6 4 38 38 H 1.09000 * 110.72493 * 140.31298 * 12 4 2 39 39 H 1.08997 * 110.72186 * 263.41962 * 12 4 2 40 40 H 1.08999 * 110.66632 * 204.15197 * 13 12 4 41 41 H 1.09001 * 110.66753 * 81.01818 * 13 12 4 42 42 H 1.09008 * 109.47114 * 50.00395 * 15 14 2 43 43 H 1.08997 * 109.47522 * 289.99757 * 15 14 2 44 44 H 1.09000 * 109.47171 * 305.00064 * 16 15 14 45 45 H 1.09006 * 109.47213 * 185.00028 * 16 15 14 46 46 H 1.08996 * 109.46910 * 59.99781 * 18 17 16 47 47 H 1.09007 * 109.46881 * 299.99814 * 18 17 16 48 48 H 0.97002 * 119.99880 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0587 -0.7495 1.2369 5 1 2.6733 -0.0871 1.8466 6 7 0.9406 -1.2787 2.0290 7 6 0.3412 -0.2267 2.8629 8 6 -0.8543 -0.8056 3.6242 9 8 -0.4222 -1.9288 4.3971 10 6 0.1660 -2.9728 3.6165 11 6 1.3717 -2.4158 2.8552 12 6 2.9123 -1.9084 0.6725 13 6 3.2708 -1.4132 -0.7512 14 7 2.0338 -0.7183 -1.1907 15 6 2.3166 0.2160 -2.2885 16 6 3.0630 -0.5187 -3.4039 17 8 2.2120 -1.5185 -3.9681 18 6 2.8160 -2.2667 -5.0252 19 6 1.8346 -3.2863 -5.5434 20 1 0.8499 -3.3588 -5.1059 21 6 2.1960 -4.1305 -6.5718 22 7 3.3970 -4.0458 -7.1009 23 14 0.9797 -5.3947 -7.2135 24 1 -0.2929 -5.2864 -6.4559 25 1 0.7202 -5.1451 -8.6542 26 1 1.5447 -6.7572 -7.0411 27 1 -0.3633 -0.9915 0.2700 28 1 -0.3634 0.7295 0.7237 29 1 -0.3633 0.2619 -0.9937 30 1 1.0818 0.1407 3.5732 31 1 0.0059 0.5937 2.2284 32 1 -1.6179 -1.1242 2.9147 33 1 -1.2675 -0.0452 4.2868 34 1 -0.5681 -3.3543 2.9068 35 1 0.4913 -3.7793 4.2736 36 1 1.7888 -3.1933 2.2150 37 1 2.1294 -2.0835 3.5648 38 1 3.8131 -2.0503 1.2697 39 1 2.3313 -2.8295 0.6286 40 1 3.4927 -2.2552 -1.4068 41 1 4.1105 -0.7190 -0.7170 42 1 2.9322 1.0359 -1.9183 43 1 1.3794 0.6127 -2.6786 44 1 3.9559 -0.9907 -2.9940 45 1 3.3509 0.1926 -4.1782 46 1 3.7039 -2.7749 -4.6493 47 1 3.0983 -1.5915 -5.8330 48 1 3.6512 -4.6395 -7.8246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339205640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:28 Heat of formation + Delta-G solvation = -84.955416 kcal Electronic energy + Delta-G solvation = -25510.258774 eV Core-core repulsion = 21986.058524 eV Total energy + Delta-G solvation = -3524.200250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30621 -39.71474 -38.39800 -36.39335 -34.91234 -33.09876 -32.72111 -31.46873 -29.81046 -28.58000 -27.44108 -25.71180 -25.03244 -24.48781 -23.49767 -21.74008 -21.29754 -20.42589 -18.62608 -17.67769 -17.48868 -17.36595 -17.00773 -16.62430 -16.35651 -16.18884 -15.91109 -15.77166 -15.45983 -15.23727 -14.84601 -14.64276 -14.07728 -13.83802 -13.61300 -13.40898 -13.31781 -12.97061 -12.84303 -12.76933 -12.66882 -12.43246 -12.26841 -12.21150 -12.12091 -12.04037 -11.74985 -11.63087 -11.46028 -11.33022 -11.24069 -10.86108 -10.58064 -10.18812 -9.32508 -9.16741 -8.31874 -6.43585 1.39802 1.41255 1.56494 2.35551 2.70581 2.95878 3.00275 3.01780 3.23352 3.51023 3.70747 3.98062 4.03202 4.06951 4.19299 4.21728 4.24400 4.25236 4.31329 4.33397 4.44514 4.48102 4.56593 4.59839 4.62232 4.70926 4.73801 4.79713 4.82152 4.83191 4.91945 4.96430 4.99546 5.03516 5.12450 5.16448 5.18926 5.25014 5.56254 5.66539 5.96778 5.97837 6.03303 6.11557 6.21479 6.22693 6.57074 6.86356 7.28754 8.80767 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003173 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.339634 B = 8822.674025 C = 9504.887500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.072 3.928 3 H 0.057 0.943 4 C 0.087 3.913 5 H 0.061 0.939 6 N -0.529 5.529 7 C 0.011 3.989 8 C 0.062 3.938 9 O -0.405 6.405 10 C 0.063 3.937 11 C 0.015 3.985 12 C -0.115 4.115 13 C 0.037 3.963 14 N -0.520 5.520 15 C 0.063 3.937 16 C 0.055 3.945 17 O -0.395 6.395 18 C 0.211 3.789 19 C -0.544 4.544 20 H 0.058 0.942 21 C 0.006 3.994 22 N -0.931 5.931 23 Si 0.983 3.017 24 H -0.266 1.266 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.046 0.954 46 H -0.018 1.018 47 H -0.017 1.017 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 8.940 23.342 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 H 0.075 0.925 4 C -0.022 4.022 5 H 0.078 0.922 6 N -0.255 5.255 7 C -0.116 4.116 8 C -0.015 4.015 9 O -0.324 6.324 10 C -0.013 4.013 11 C -0.113 4.113 12 C -0.153 4.153 13 C -0.091 4.091 14 N -0.245 5.245 15 C -0.065 4.065 16 C -0.022 4.022 17 O -0.314 6.314 18 C 0.135 3.865 19 C -0.582 4.582 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.571 5.571 23 Si 0.805 3.195 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.195 1.195 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.000 1.000 47 H 0.001 0.999 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.123 8.303 22.954 24.756 hybrid contribution 1.468 0.339 -0.464 1.577 sum -2.655 8.642 22.490 24.239 Atomic orbital electron populations 1.21715 0.93361 1.02825 0.99957 1.22465 0.97423 0.95151 0.88638 0.92508 1.22426 0.90442 0.95671 0.93702 0.92155 1.62287 1.30111 1.08588 1.24492 1.23086 0.97408 0.95199 0.95943 1.22778 0.95119 0.88541 0.95029 1.87944 1.79822 1.29300 1.35322 1.22746 0.93850 0.89956 0.94788 1.22872 0.97519 0.94959 0.95912 1.22676 0.99551 0.98448 0.94596 1.23112 0.91614 0.98228 0.96116 1.64675 1.27021 1.26708 1.06112 1.22224 1.00270 0.93186 0.90836 1.22629 0.93476 0.90822 0.95291 1.87925 1.41069 1.50103 1.52337 1.19776 0.92994 0.89571 0.84118 1.21398 1.00557 1.17890 1.18338 0.92328 1.25951 0.97758 0.99529 0.95968 1.70075 1.20726 1.39933 1.26356 0.85145 0.78389 0.77759 0.78168 1.18986 1.19536 1.19549 0.91552 0.90938 0.94897 0.94239 0.87811 0.92505 0.86768 0.92752 0.87029 0.88900 0.94031 0.89311 0.90530 0.92408 0.92865 0.91206 0.90630 0.94152 0.93631 1.00025 0.99926 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.27 71.98 0.59 -2.19 16 2 C 0.07 1.65 3.01 45.06 0.14 1.79 16 3 H 0.06 1.16 7.57 -2.39 -0.02 1.14 16 4 C 0.09 1.72 2.85 45.80 0.13 1.85 16 5 H 0.06 1.07 8.00 -2.39 -0.02 1.05 16 6 N -0.53 -10.06 2.91 -864.84 -2.51 -12.57 16 7 C 0.01 0.17 5.03 86.31 0.43 0.61 16 8 C 0.06 0.96 7.01 72.02 0.50 1.46 16 9 O -0.40 -7.89 10.83 -148.98 -1.61 -9.50 16 10 C 0.06 1.08 7.01 72.01 0.50 1.58 16 11 C 0.02 0.26 5.09 86.31 0.44 0.70 16 12 C -0.11 -2.52 5.48 31.80 0.17 -2.34 16 13 C 0.04 1.03 5.09 86.65 0.44 1.47 16 14 N -0.52 -15.70 4.98 -858.07 -4.27 -19.97 16 15 C 0.06 1.90 5.41 86.30 0.47 2.37 16 16 C 0.06 2.11 5.76 71.98 0.41 2.52 16 17 O -0.39 -20.15 10.27 -148.98 -1.53 -21.68 16 18 C 0.21 12.24 5.69 71.24 0.41 12.64 16 19 C -0.54 -33.51 9.43 25.60 0.24 -33.27 16 20 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 21 C 0.01 0.36 5.46 84.65 0.46 0.82 16 22 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 23 Si 0.98 45.45 29.54 68.60 2.03 47.48 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H 0.07 1.76 6.94 -2.39 -0.02 1.74 16 28 H 0.07 1.26 5.65 -2.39 -0.01 1.25 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 1.43 5.07 -2.39 -0.01 1.42 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 0.99 8.14 -2.38 -0.02 0.98 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.64 5.80 -2.38 -0.01 1.63 16 37 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.89 6.38 -2.39 -0.02 1.88 16 40 H 0.06 1.98 7.56 -2.39 -0.02 1.96 16 41 H 0.05 1.29 8.01 -2.39 -0.02 1.27 16 42 H 0.07 1.66 7.81 -2.38 -0.02 1.64 16 43 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.04 1.50 6.52 -2.39 -0.02 1.49 16 45 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 46 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 47 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 48 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -70.59 362.83 -1.35 -71.94 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.91 Total: 10.95 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 5.35 Total: -9.97 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -6.50 Total: -89.21 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -3.14 Total: -31.18 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.59 -1.35 -71.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339205640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.017 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds