Wall clock time and date at job start Tue Mar 31 2020 03:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87828 * 2 1 4 4 C 1.54310 * 109.89150 * 121.03041 * 2 1 3 5 5 H 1.09003 * 110.70714 * 23.30957 * 4 2 1 6 6 N 1.46906 * 110.70733 * 260.25032 * 4 2 1 7 7 C 1.47018 * 110.99893 * 186.14474 * 6 4 2 8 8 C 1.53096 * 109.25435 * 177.60664 * 7 6 4 9 9 O 1.43013 * 109.25912 * 56.85132 * 8 7 6 10 10 C 1.43020 * 113.73762 * 301.32700 * 9 8 7 11 11 C 1.47007 * 110.99760 * 62.51186 * 6 4 2 12 12 C 1.55142 * 103.01965 * 141.69249 * 4 2 1 13 13 C 1.54907 * 101.65261 * 324.34712 * 12 4 2 14 14 N 1.47443 * 109.88858 * 238.97040 * 2 1 3 15 15 C 1.46896 * 111.00185 * 3.85138 * 14 2 1 16 16 C 1.52999 * 109.47382 * 169.99945 * 15 14 2 17 17 O 1.42902 * 109.47046 * 64.99483 * 16 15 14 18 18 C 1.42894 * 114.00247 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47380 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99944 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99793 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00280 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99795 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47640 * 119.99592 * 23 21 19 26 26 H 1.48503 * 109.47136 * 239.99883 * 23 21 19 27 27 H 1.09004 * 109.47569 * 299.29398 * 1 2 3 28 28 H 1.08999 * 109.47285 * 59.30089 * 1 2 3 29 29 H 1.09001 * 109.47061 * 179.29977 * 1 2 3 30 30 H 1.09000 * 109.50447 * 297.54040 * 7 6 4 31 31 H 1.08994 * 109.50957 * 57.67100 * 7 6 4 32 32 H 1.08995 * 109.50708 * 296.91272 * 8 7 6 33 33 H 1.09002 * 109.50399 * 176.78297 * 8 7 6 34 34 H 1.08997 * 109.50621 * 298.73409 * 10 9 8 35 35 H 1.09003 * 109.54241 * 178.62685 * 10 9 8 36 36 H 1.09002 * 109.50891 * 302.32176 * 11 6 4 37 37 H 1.09000 * 109.51020 * 62.41721 * 11 6 4 38 38 H 1.08994 * 110.98963 * 82.44335 * 12 4 2 39 39 H 1.09006 * 110.98788 * 206.21936 * 12 4 2 40 40 H 1.08996 * 110.37377 * 155.90104 * 13 12 4 41 41 H 1.09002 * 110.37243 * 278.24340 * 13 12 4 42 42 H 1.09000 * 109.47166 * 289.99937 * 15 14 2 43 43 H 1.09000 * 109.47356 * 49.99983 * 15 14 2 44 44 H 1.08992 * 109.47174 * 184.99475 * 16 15 14 45 45 H 1.09002 * 109.46826 * 305.00445 * 16 15 14 46 46 H 1.09004 * 109.47275 * 300.00333 * 18 17 16 47 47 H 1.08999 * 109.47190 * 59.99857 * 18 17 16 48 48 H 0.97003 * 120.00152 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7480 1.2434 5 1 1.3056 -1.4448 1.6190 6 7 2.4506 0.2015 2.2922 7 6 3.0860 -0.4945 3.4206 8 6 3.5351 0.5353 4.4607 9 8 2.4079 1.3141 4.8706 10 6 1.7651 2.0061 3.7966 11 6 1.2981 0.9913 2.7497 12 6 3.2892 -1.5123 0.6962 13 6 2.8190 -1.8842 -0.7321 14 7 2.0316 -0.7147 -1.1881 15 6 0.9240 -1.1309 -2.0587 16 6 1.4841 -1.6414 -3.3878 17 8 2.2503 -2.8256 -3.1584 18 6 2.8218 -3.3865 -4.3419 19 6 3.6031 -4.6246 -3.9844 20 1 3.6581 -4.9503 -2.9562 21 6 4.2486 -5.3408 -4.9700 22 7 4.1821 -4.9439 -6.2220 23 14 5.2165 -6.8759 -4.5270 24 1 5.1354 -7.1067 -3.0623 25 1 4.6472 -8.0446 -5.2449 26 1 6.6369 -6.6966 -4.9215 27 1 -0.3634 0.5028 0.8963 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 2.3713 -1.1815 3.8736 31 1 3.9517 -1.0522 3.0633 32 1 4.2896 1.1890 4.0234 33 1 3.9553 0.0204 5.3247 34 1 2.4681 2.7028 3.3400 35 1 0.9052 2.5556 4.1798 36 1 0.8587 1.5182 1.9028 37 1 0.5545 0.3279 3.1914 38 1 4.1657 -0.8653 0.6627 39 1 3.4886 -2.4061 1.2874 40 1 3.6772 -2.0402 -1.3856 41 1 2.1940 -2.7769 -0.7054 42 1 0.3592 -1.9266 -1.5728 43 1 0.2678 -0.2804 -2.2436 44 1 0.6613 -1.8667 -4.0662 45 1 2.1216 -0.8765 -3.8311 46 1 2.0270 -3.6479 -5.0406 47 1 3.4871 -2.6576 -4.8048 48 1 4.6359 -5.4481 -6.9154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339205642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:40 Heat of formation + Delta-G solvation = -73.360309 kcal Electronic energy + Delta-G solvation = -25510.045359 eV Core-core repulsion = 21986.347910 eV Total energy + Delta-G solvation = -3523.697449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37288 -38.90363 -36.69575 -35.35093 -32.78339 -32.23816 -31.44216 -30.72381 -28.32501 -27.03108 -26.36315 -24.47770 -24.32714 -22.46564 -21.91157 -21.00405 -20.39623 -19.21163 -17.34049 -16.37805 -16.33627 -15.86141 -15.69575 -15.52925 -15.26526 -15.09651 -14.70827 -14.43822 -14.10273 -14.07405 -13.69837 -13.23498 -12.98703 -12.74048 -12.52605 -12.25422 -11.95596 -11.78576 -11.68605 -11.64790 -11.37202 -11.16194 -11.04649 -10.81045 -10.76583 -10.72952 -10.54672 -10.51145 -10.36470 -9.93012 -9.89591 -9.06427 -8.79374 -8.62910 -8.13690 -7.98815 -6.10294 -4.11767 3.28573 3.35189 3.40877 3.43423 3.62371 4.17532 4.35171 4.39347 4.64670 4.71894 4.83173 4.87027 4.90269 4.95151 5.00595 5.05506 5.19223 5.26348 5.28485 5.33105 5.34990 5.40785 5.49165 5.53530 5.54635 5.65771 5.68395 5.73078 5.84669 5.88360 5.99131 6.10532 6.12313 6.22827 6.33496 6.46292 6.63646 6.72279 6.85769 6.88169 7.14873 7.28875 7.37638 7.46983 7.79935 8.17268 8.60856 9.02202 9.53161 11.01311 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.003105 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.725667 B = 9016.734707 C =10021.960001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.091 0.909 4 C 0.066 3.934 5 H 0.047 0.953 6 N -0.523 5.523 7 C 0.017 3.983 8 C 0.064 3.936 9 O -0.388 6.388 10 C 0.064 3.936 11 C 0.013 3.987 12 C -0.125 4.125 13 C 0.060 3.940 14 N -0.515 5.515 15 C 0.052 3.948 16 C 0.064 3.936 17 O -0.393 6.393 18 C 0.196 3.804 19 C -0.511 4.511 20 H 0.065 0.935 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.002 0.998 47 H 0.005 0.995 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 13.104 18.648 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.032 4.032 3 H 0.109 0.891 4 C -0.043 4.043 5 H 0.065 0.935 6 N -0.249 5.249 7 C -0.112 4.112 8 C -0.013 4.013 9 O -0.307 6.307 10 C -0.013 4.013 11 C -0.115 4.115 12 C -0.163 4.163 13 C -0.067 4.067 14 N -0.240 5.240 15 C -0.076 4.076 16 C -0.014 4.014 17 O -0.313 6.313 18 C 0.121 3.879 19 C -0.550 4.550 20 H 0.084 0.916 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.733 3.267 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.208 1.208 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.023 0.977 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.493 13.631 18.332 23.496 hybrid contribution -0.644 -1.898 0.191 2.013 sum -6.137 11.733 18.523 22.769 Atomic orbital electron populations 1.22543 0.96474 1.02285 1.02130 1.22424 0.92897 0.99430 0.88458 0.89069 1.23011 0.97090 0.92627 0.91542 0.93483 1.62269 1.27539 1.25040 1.10006 1.22791 1.00156 0.96398 0.91808 1.22672 0.88361 0.92825 0.97413 1.87970 1.45210 1.64296 1.33226 1.22672 0.97499 0.93592 0.87562 1.22897 0.92605 0.96989 0.98975 1.22855 0.97527 0.99258 0.96703 1.23045 0.98898 0.91341 0.93407 1.63910 1.21301 1.24045 1.14741 1.22460 0.92742 0.98512 0.93909 1.22278 0.94774 0.89303 0.95016 1.87854 1.68334 1.39790 1.35319 1.20157 0.92132 0.93019 0.82551 1.21075 1.30551 1.08637 0.94696 0.91636 1.24948 0.96653 0.98217 0.94734 1.69973 1.43825 1.39936 1.00020 0.86318 0.79485 0.82235 0.78663 1.19534 1.20918 1.20844 0.92467 0.91426 0.92316 0.94160 0.89164 0.92130 0.88540 0.92159 0.88618 0.89100 0.94187 0.89898 0.91357 0.88612 0.92740 0.94213 0.89987 0.94411 0.93675 0.98039 0.97737 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 7.60 37.16 0.28 -1.52 16 2 C 0.08 0.93 2.94 -66.73 -0.20 0.74 16 3 H 0.09 1.15 7.74 -51.93 -0.40 0.75 16 4 C 0.07 0.78 2.18 -65.89 -0.14 0.64 16 5 H 0.05 0.58 7.85 -51.93 -0.41 0.17 16 6 N -0.52 -5.50 4.55 -224.15 -1.02 -6.52 16 7 C 0.02 0.16 5.45 -3.71 -0.02 0.14 16 8 C 0.06 0.56 7.01 37.21 0.26 0.82 16 9 O -0.39 -4.01 10.83 -35.23 -0.38 -4.39 16 10 C 0.06 0.54 7.01 37.21 0.26 0.80 16 11 C 0.01 0.12 4.77 -3.71 -0.02 0.10 16 12 C -0.13 -1.63 5.38 -24.59 -0.13 -1.77 16 13 C 0.06 0.99 5.08 -2.11 -0.01 0.98 16 14 N -0.52 -7.84 5.18 -223.07 -1.15 -8.99 16 15 C 0.05 0.78 4.26 -3.83 -0.02 0.77 16 16 C 0.06 1.20 6.23 37.16 0.23 1.43 16 17 O -0.39 -9.19 7.69 -35.23 -0.27 -9.46 16 18 C 0.20 5.34 5.69 36.01 0.20 5.54 16 19 C -0.51 -14.89 9.43 -34.44 -0.32 -15.21 16 20 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 23 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H 0.06 0.50 6.08 -51.93 -0.32 0.18 16 28 H 0.07 0.66 6.44 -51.93 -0.33 0.32 16 29 H 0.06 0.65 6.90 -51.93 -0.36 0.29 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.83 7.01 -51.93 -0.36 0.46 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.76 5.63 -51.93 -0.29 0.47 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 40 H 0.10 1.85 7.60 -51.93 -0.39 1.45 16 41 H 0.05 0.97 7.25 -51.93 -0.38 0.60 16 42 H 0.04 0.61 6.80 -51.93 -0.35 0.26 16 43 H 0.08 1.04 6.09 -51.93 -0.32 0.72 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 47 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -31.14 359.98 -9.93 -41.07 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.53 Total: -2.65 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 0.28 Total: -5.04 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -1.44 Total: -41.71 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.65 Total: -13.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.14 -9.93 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339205642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.290 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds