Wall clock time and date at job start Tue Mar 31 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87828 * 2 1 4 4 C 1.54310 * 109.89150 * 121.03041 * 2 1 3 5 5 H 1.09003 * 110.70714 * 23.30957 * 4 2 1 6 6 N 1.46906 * 110.70733 * 260.25032 * 4 2 1 7 7 C 1.47018 * 110.99893 * 186.14474 * 6 4 2 8 8 C 1.53096 * 109.25435 * 177.60664 * 7 6 4 9 9 O 1.43013 * 109.25912 * 56.85132 * 8 7 6 10 10 C 1.43020 * 113.73762 * 301.32700 * 9 8 7 11 11 C 1.47007 * 110.99760 * 62.51186 * 6 4 2 12 12 C 1.55142 * 103.01965 * 141.69249 * 4 2 1 13 13 C 1.54907 * 101.65261 * 324.34712 * 12 4 2 14 14 N 1.47443 * 109.88858 * 238.97040 * 2 1 3 15 15 C 1.46896 * 111.00185 * 3.85138 * 14 2 1 16 16 C 1.52999 * 109.47382 * 169.99945 * 15 14 2 17 17 O 1.42902 * 109.47046 * 64.99483 * 16 15 14 18 18 C 1.42894 * 114.00247 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47380 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99944 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99793 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00280 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99795 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47322 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47640 * 119.99592 * 23 21 19 26 26 H 1.48503 * 109.47136 * 239.99883 * 23 21 19 27 27 H 1.09004 * 109.47569 * 299.29398 * 1 2 3 28 28 H 1.08999 * 109.47285 * 59.30089 * 1 2 3 29 29 H 1.09001 * 109.47061 * 179.29977 * 1 2 3 30 30 H 1.09000 * 109.50447 * 297.54040 * 7 6 4 31 31 H 1.08994 * 109.50957 * 57.67100 * 7 6 4 32 32 H 1.08995 * 109.50708 * 296.91272 * 8 7 6 33 33 H 1.09002 * 109.50399 * 176.78297 * 8 7 6 34 34 H 1.08997 * 109.50621 * 298.73409 * 10 9 8 35 35 H 1.09003 * 109.54241 * 178.62685 * 10 9 8 36 36 H 1.09002 * 109.50891 * 302.32176 * 11 6 4 37 37 H 1.09000 * 109.51020 * 62.41721 * 11 6 4 38 38 H 1.08994 * 110.98963 * 82.44335 * 12 4 2 39 39 H 1.09006 * 110.98788 * 206.21936 * 12 4 2 40 40 H 1.08996 * 110.37377 * 155.90104 * 13 12 4 41 41 H 1.09002 * 110.37243 * 278.24340 * 13 12 4 42 42 H 1.09000 * 109.47166 * 289.99937 * 15 14 2 43 43 H 1.09000 * 109.47356 * 49.99983 * 15 14 2 44 44 H 1.08992 * 109.47174 * 184.99475 * 16 15 14 45 45 H 1.09002 * 109.46826 * 305.00445 * 16 15 14 46 46 H 1.09004 * 109.47275 * 300.00333 * 18 17 16 47 47 H 1.08999 * 109.47190 * 59.99857 * 18 17 16 48 48 H 0.97003 * 120.00152 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7480 1.2434 5 1 1.3056 -1.4448 1.6190 6 7 2.4506 0.2015 2.2922 7 6 3.0860 -0.4945 3.4206 8 6 3.5351 0.5353 4.4607 9 8 2.4079 1.3141 4.8706 10 6 1.7651 2.0061 3.7966 11 6 1.2981 0.9913 2.7497 12 6 3.2892 -1.5123 0.6962 13 6 2.8190 -1.8842 -0.7321 14 7 2.0316 -0.7147 -1.1881 15 6 0.9240 -1.1309 -2.0587 16 6 1.4841 -1.6414 -3.3878 17 8 2.2503 -2.8256 -3.1584 18 6 2.8218 -3.3865 -4.3419 19 6 3.6031 -4.6246 -3.9844 20 1 3.6581 -4.9503 -2.9562 21 6 4.2486 -5.3408 -4.9700 22 7 4.1821 -4.9439 -6.2220 23 14 5.2165 -6.8759 -4.5270 24 1 5.1354 -7.1067 -3.0623 25 1 4.6472 -8.0446 -5.2449 26 1 6.6369 -6.6966 -4.9215 27 1 -0.3634 0.5028 0.8963 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 2.3713 -1.1815 3.8736 31 1 3.9517 -1.0522 3.0633 32 1 4.2896 1.1890 4.0234 33 1 3.9553 0.0204 5.3247 34 1 2.4681 2.7028 3.3400 35 1 0.9052 2.5556 4.1798 36 1 0.8587 1.5182 1.9028 37 1 0.5545 0.3279 3.1914 38 1 4.1657 -0.8653 0.6627 39 1 3.4886 -2.4061 1.2874 40 1 3.6772 -2.0402 -1.3856 41 1 2.1940 -2.7769 -0.7054 42 1 0.3592 -1.9266 -1.5728 43 1 0.2678 -0.2804 -2.2436 44 1 0.6613 -1.8667 -4.0662 45 1 2.1216 -0.8765 -3.8311 46 1 2.0270 -3.6479 -5.0406 47 1 3.4871 -2.6576 -4.8048 48 1 4.6359 -5.4481 -6.9154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339205642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:39 Heat of formation + Delta-G solvation = -96.506058 kcal Electronic energy + Delta-G solvation = -25511.049034 eV Core-core repulsion = 21986.347910 eV Total energy + Delta-G solvation = -3524.701124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31077 -39.85922 -38.38144 -36.37471 -34.91946 -33.27116 -32.49060 -31.64161 -29.83560 -28.61658 -27.56614 -25.44887 -25.13525 -24.50867 -23.33787 -21.95220 -21.25192 -20.36092 -18.62003 -18.18987 -17.44708 -17.11636 -17.03953 -16.57815 -16.38785 -16.05612 -15.87585 -15.84204 -15.45145 -15.17236 -14.93357 -14.50175 -14.45054 -13.87238 -13.64184 -13.53457 -13.11817 -13.00873 -12.96044 -12.75337 -12.68773 -12.56308 -12.36680 -12.31336 -12.20913 -12.05817 -11.77037 -11.62698 -11.48822 -11.41013 -11.20562 -10.85773 -10.64307 -10.18052 -9.45689 -9.19757 -8.32083 -6.43983 1.38962 1.40375 1.54753 2.34021 2.61894 2.95733 3.01855 3.03615 3.24298 3.43214 3.78435 3.94617 3.96348 4.01423 4.14120 4.20041 4.24978 4.29725 4.31899 4.35681 4.45306 4.47142 4.54239 4.58104 4.65577 4.67703 4.70894 4.74964 4.81394 4.83234 4.88875 4.94245 4.96169 5.02112 5.13589 5.19041 5.20735 5.24181 5.29088 5.55274 5.92738 5.97129 5.98632 6.06382 6.17975 6.21217 6.55240 6.83880 7.28051 8.80623 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.003105 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.725667 B = 9016.734707 C =10021.960001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 H 0.093 0.907 4 C 0.077 3.923 5 H 0.044 0.956 6 N -0.529 5.529 7 C 0.017 3.983 8 C 0.065 3.935 9 O -0.405 6.405 10 C 0.062 3.938 11 C 0.014 3.986 12 C -0.116 4.116 13 C 0.065 3.935 14 N -0.530 5.530 15 C 0.062 3.938 16 C 0.054 3.946 17 O -0.399 6.399 18 C 0.211 3.789 19 C -0.541 4.541 20 H 0.062 0.938 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.982 3.018 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.272 1.272 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.116 0.884 44 H 0.047 0.953 45 H 0.039 0.961 46 H -0.018 1.018 47 H -0.020 1.020 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 13.502 20.337 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.029 4.029 3 H 0.111 0.889 4 C -0.032 4.032 5 H 0.062 0.938 6 N -0.254 5.254 7 C -0.112 4.112 8 C -0.011 4.011 9 O -0.324 6.324 10 C -0.014 4.014 11 C -0.113 4.113 12 C -0.154 4.154 13 C -0.063 4.063 14 N -0.255 5.255 15 C -0.065 4.065 16 C -0.023 4.023 17 O -0.318 6.318 18 C 0.136 3.864 19 C -0.579 4.579 20 H 0.080 0.920 21 C -0.194 4.194 22 N -0.571 5.571 23 Si 0.805 3.195 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.197 1.197 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.134 0.866 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.000 1.000 47 H -0.002 1.002 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.938 14.057 20.035 25.184 hybrid contribution -0.540 -1.920 -0.346 2.025 sum -6.478 12.136 19.689 24.019 Atomic orbital electron populations 1.22488 0.94541 1.02229 1.03630 1.22441 0.94446 0.98791 0.87225 0.88902 1.22829 0.95932 0.92592 0.91876 0.93807 1.62270 1.28265 1.24712 1.10194 1.22826 0.99998 0.96628 0.91707 1.22750 0.88028 0.92581 0.97790 1.87951 1.45680 1.64575 1.34226 1.22805 0.98181 0.93316 0.87117 1.22950 0.91985 0.96883 0.99511 1.22743 0.98109 0.99826 0.94745 1.22798 0.97444 0.91304 0.94740 1.63812 1.21757 1.23452 1.16450 1.22437 0.92720 0.99576 0.91805 1.22614 0.94391 0.87439 0.97845 1.87849 1.68849 1.41617 1.33528 1.19752 0.91026 0.92325 0.83275 1.21380 1.31843 1.09800 0.94849 0.92014 1.25963 0.97310 1.01682 0.94407 1.70083 1.44420 1.41476 1.01162 0.85154 0.77960 0.77616 0.78787 1.18732 1.19742 1.19747 0.90450 0.90510 0.93070 0.94647 0.89042 0.92025 0.86927 0.92020 0.86658 0.88146 0.94495 0.90118 0.90539 0.92483 0.94776 0.94286 0.86640 0.93490 0.94313 1.00034 1.00191 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 7.60 71.98 0.55 -2.50 16 2 C 0.08 1.80 2.94 45.25 0.13 1.93 16 3 H 0.09 2.13 7.74 -2.39 -0.02 2.12 16 4 C 0.08 1.71 2.18 46.09 0.10 1.81 16 5 H 0.04 1.02 7.85 -2.39 -0.02 1.00 16 6 N -0.53 -10.20 4.55 -863.09 -3.93 -14.13 16 7 C 0.02 0.29 5.45 86.31 0.47 0.76 16 8 C 0.07 1.02 7.01 72.01 0.50 1.53 16 9 O -0.41 -7.56 10.83 -148.98 -1.61 -9.17 16 10 C 0.06 0.91 7.01 72.02 0.50 1.41 16 11 C 0.01 0.23 4.77 86.32 0.41 0.64 16 12 C -0.12 -3.02 5.38 31.98 0.17 -2.84 16 13 C 0.07 2.20 5.08 86.71 0.44 2.64 16 14 N -0.53 -15.96 5.18 -859.66 -4.45 -20.41 16 15 C 0.06 1.84 4.26 86.30 0.37 2.21 16 16 C 0.05 2.08 6.23 71.98 0.45 2.53 16 17 O -0.40 -19.41 7.69 -148.98 -1.15 -20.56 16 18 C 0.21 12.06 5.69 71.24 0.41 12.46 16 19 C -0.54 -32.40 9.43 25.60 0.24 -32.15 16 20 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 21 C 0.00 0.27 5.46 84.65 0.46 0.73 16 22 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 23 Si 0.98 44.70 29.54 68.60 2.03 46.72 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H 0.08 1.09 6.08 -2.38 -0.01 1.07 16 28 H 0.08 1.24 6.44 -2.39 -0.02 1.22 16 29 H 0.05 1.01 6.90 -2.39 -0.02 1.00 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.57 7.01 -2.39 -0.02 1.55 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.38 5.63 -2.39 -0.01 1.37 16 37 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.08 1.84 8.03 -2.38 -0.02 1.82 16 40 H 0.06 2.34 7.60 -2.39 -0.02 2.32 16 41 H 0.03 1.27 7.25 -2.39 -0.02 1.25 16 42 H 0.04 1.17 6.80 -2.39 -0.02 1.16 16 43 H 0.12 2.65 6.09 -2.39 -0.01 2.64 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 47 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 48 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -68.22 359.98 -2.70 -70.92 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.91 Total: 11.90 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.21 Total: -8.85 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -8.09 Total: -90.97 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -2.76 Total: -29.73 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.22 -2.70 -70.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339205642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.588 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds