Wall clock time and date at job start Tue Mar 31 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53036 * 109.46467 * 119.98182 * 2 1 3 5 5 C 1.53125 * 109.27732 * 179.19552 * 4 2 1 6 6 H 1.08996 * 109.52102 * 62.25370 * 5 4 2 7 7 C 1.52998 * 109.51838 * 182.37977 * 5 4 2 8 8 O 1.42907 * 109.47082 * 185.00131 * 7 5 4 9 9 C 1.53117 * 109.16092 * 302.34470 * 5 4 2 10 10 C 1.53040 * 109.27812 * 57.65518 * 9 5 4 11 11 N 1.46846 * 109.46205 * 240.02752 * 2 1 3 12 12 C 1.46895 * 111.00443 * 54.14119 * 11 2 1 13 13 C 1.53001 * 109.47511 * 170.00139 * 12 11 2 14 14 C 1.50699 * 109.47176 * 180.02562 * 13 12 11 15 15 O 1.21276 * 120.00294 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99807 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00174 * 359.97438 * 16 14 13 18 18 C 1.46503 * 119.99765 * 179.97438 * 16 14 13 19 19 C 1.50701 * 109.47282 * 90.00250 * 18 16 14 20 20 H 1.07996 * 119.99534 * 359.97438 * 19 18 16 21 21 C 1.37872 * 120.00109 * 179.97438 * 19 18 16 22 22 N 1.31513 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00160 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46884 * 89.99841 * 23 21 19 25 25 H 1.48500 * 109.47070 * 210.00177 * 23 21 19 26 26 H 1.48501 * 109.46906 * 330.00226 * 23 21 19 27 27 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 30 30 H 1.09000 * 109.50418 * 299.13373 * 4 2 1 31 31 H 1.09001 * 109.50208 * 59.25303 * 4 2 1 32 32 H 1.09003 * 109.47285 * 304.99463 * 7 5 4 33 33 H 1.08999 * 109.47680 * 65.00133 * 7 5 4 34 34 H 0.96692 * 114.00230 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.50016 * 177.59647 * 9 5 4 36 36 H 1.09007 * 109.50424 * 297.67416 * 9 5 4 37 37 H 1.09004 * 109.46018 * 60.83838 * 10 9 5 38 38 H 1.08998 * 109.46068 * 180.81172 * 10 9 5 39 39 H 1.08999 * 109.47311 * 290.00406 * 12 11 2 40 40 H 1.09003 * 109.46962 * 50.00210 * 12 11 2 41 41 H 1.09005 * 109.47019 * 299.99994 * 13 12 11 42 42 H 1.08994 * 109.47197 * 59.99983 * 13 12 11 43 43 H 1.08998 * 109.47606 * 89.99825 * 17 16 14 44 44 H 1.08995 * 109.47247 * 209.99993 * 17 16 14 45 45 H 1.09002 * 109.46750 * 329.99994 * 17 16 14 46 46 H 1.09000 * 109.46619 * 210.00176 * 18 16 14 47 47 H 1.09001 * 109.47028 * 329.99585 * 18 16 14 48 48 H 0.97004 * 119.99845 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5710 -0.7362 1.2354 6 1 3.9457 0.2869 1.2672 7 6 4.0861 -1.5074 2.4522 8 8 5.5118 -1.4222 2.5016 9 6 4.0548 -1.4187 -0.0470 10 6 3.4864 -0.6774 -1.2593 11 7 2.0192 -0.6917 -1.1994 12 6 1.4373 -0.1106 -2.4165 13 6 2.1496 -0.6805 -3.6448 14 6 1.5529 -0.0839 -4.8934 15 8 0.6468 0.7178 -4.8093 16 7 2.0263 -0.4412 -6.1037 17 6 3.1212 -1.4092 -6.2054 18 6 1.4459 0.1384 -7.3176 19 6 2.1901 1.3982 -7.6782 20 1 3.0128 1.7337 -7.0644 21 6 1.8206 2.1223 -8.7918 22 7 0.8183 1.7138 -9.5390 23 14 2.7426 3.6843 -9.2384 24 1 3.8757 3.3501 -10.1381 25 1 1.8217 4.6222 -9.9295 26 1 3.2633 4.3222 -8.0027 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6896 -0.1984 2.1399 31 1 1.6659 -1.7449 1.2573 32 1 3.6648 -1.0766 3.3605 33 1 3.7872 -2.5526 2.3732 34 1 5.9080 -1.8894 3.2498 35 1 5.1440 -1.3945 -0.0834 36 1 3.7131 -2.4538 -0.0596 37 1 3.8403 0.3536 -1.2532 38 1 3.8173 -1.1696 -2.1738 39 1 0.3765 -0.3564 -2.4652 40 1 1.5587 0.9724 -2.3960 41 1 3.2105 -0.4346 -3.5962 42 1 2.0282 -1.7635 -3.6654 43 1 2.7107 -2.4167 -6.2709 44 1 3.7108 -1.1985 -7.0976 45 1 3.7570 -1.3325 -5.3233 46 1 1.5253 -0.5774 -8.1358 47 1 0.3963 0.3740 -7.1417 48 1 0.5581 2.2235 -10.3222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344117148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:52 Heat of formation + Delta-G solvation = -119.926140 kcal Electronic energy + Delta-G solvation = -25009.542435 eV Core-core repulsion = 21483.825740 eV Total energy + Delta-G solvation = -3525.716695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03981 -40.20967 -37.85523 -36.62447 -35.24314 -34.71586 -33.65545 -31.63833 -29.74161 -28.30093 -27.38385 -27.07839 -25.26270 -24.26413 -22.83377 -21.38480 -20.67733 -19.87859 -18.72220 -18.23493 -17.99607 -17.15424 -16.84424 -16.44698 -16.31383 -16.09007 -15.90241 -15.25510 -15.13857 -14.91313 -14.44501 -14.32532 -13.93399 -13.76173 -13.66341 -13.46008 -13.21769 -13.17107 -12.98084 -12.84213 -12.73919 -12.72688 -12.59490 -12.36191 -12.23108 -12.19353 -11.87273 -11.72456 -11.56553 -11.22383 -11.13181 -10.76558 -10.66091 -10.58869 -9.43260 -9.31013 -8.24342 -6.39526 1.34373 1.37578 1.47842 1.82636 2.27163 2.40880 2.92122 3.04918 3.32586 3.73369 3.76556 3.87979 3.94583 4.06445 4.12713 4.25505 4.34100 4.39064 4.41797 4.48768 4.50453 4.58406 4.69392 4.72184 4.77403 4.81569 4.85812 4.89962 4.94005 4.95831 5.00313 5.02742 5.04647 5.15459 5.20753 5.22446 5.29287 5.32449 5.50452 5.54388 5.82934 6.04249 6.05922 6.17673 6.67658 6.78018 6.96998 7.26231 7.47165 8.82761 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.002879 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.701483 B = 9722.726580 C = 9991.955093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 H 0.026 0.974 4 C -0.094 4.094 5 C -0.093 4.093 6 H 0.057 0.943 7 C 0.084 3.916 8 O -0.595 6.595 9 C -0.098 4.098 10 C 0.041 3.959 11 N -0.527 5.527 12 C 0.081 3.919 13 C -0.123 4.123 14 C 0.494 3.506 15 O -0.601 6.601 16 N -0.612 5.612 17 C 0.078 3.922 18 C 0.258 3.742 19 C -0.544 4.544 20 H 0.052 0.948 21 C 0.006 3.994 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.274 1.274 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.396 0.604 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.019 0.981 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.014 0.986 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.024 0.976 47 H -0.003 1.003 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -10.851 25.143 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 H 0.044 0.956 4 C -0.132 4.132 5 C -0.111 4.111 6 H 0.075 0.925 7 C 0.007 3.993 8 O -0.403 6.403 9 C -0.136 4.136 10 C -0.087 4.087 11 N -0.253 5.253 12 C -0.047 4.047 13 C -0.162 4.162 14 C 0.283 3.717 15 O -0.483 6.483 16 N -0.343 5.343 17 C -0.064 4.064 18 C 0.136 3.864 19 C -0.582 4.582 20 H 0.070 0.930 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.793 3.207 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.199 1.199 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.033 0.967 41 H 0.128 0.872 42 H 0.141 0.859 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.353 -10.562 24.504 27.678 hybrid contribution 0.327 1.669 -0.478 1.767 sum 7.680 -8.893 24.026 26.746 Atomic orbital electron populations 1.21882 0.93779 1.02839 1.01870 1.21686 0.95911 0.94916 0.90457 0.95606 1.21547 0.93524 1.01963 0.96128 1.21217 0.95518 0.99421 0.94969 0.92473 1.22192 0.80614 0.99419 0.97075 1.86440 1.20763 1.78914 1.54212 1.21500 0.99996 0.99710 0.92345 1.22353 0.86991 0.98783 1.00524 1.62152 1.07452 1.54454 1.01213 1.21652 0.99260 0.95568 0.88246 1.21758 1.01422 1.03267 0.89802 1.21349 0.82845 0.81512 0.85974 1.90628 1.33035 1.37039 1.87555 1.48206 1.36240 1.43436 1.06388 1.21940 0.88989 0.91537 1.03902 1.18757 0.92984 0.92848 0.81774 1.21696 1.16631 1.09668 1.10223 0.93017 1.25879 0.96010 1.01339 0.96015 1.70053 1.28614 1.41137 1.17007 0.85400 0.78543 0.78496 0.78273 1.18629 1.20522 1.19916 0.90575 0.91273 0.94144 0.89865 0.90076 0.92539 0.92380 0.75457 0.91200 0.90658 0.96232 0.89053 0.90895 0.96750 0.87211 0.85888 0.90949 0.91603 0.88821 0.95776 0.98515 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.78 71.98 0.63 -2.28 16 2 C 0.08 1.62 2.40 44.94 0.11 1.73 16 3 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 4 C -0.09 -1.40 4.66 30.65 0.14 -1.26 16 5 C -0.09 -1.47 2.49 -10.71 -0.03 -1.50 16 6 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 7 C 0.08 1.00 6.43 71.98 0.46 1.47 16 8 O -0.59 -8.23 13.26 -148.98 -1.98 -10.21 16 9 C -0.10 -1.69 5.25 30.65 0.16 -1.52 16 10 C 0.04 0.85 4.85 86.33 0.42 1.27 16 11 N -0.53 -12.13 4.64 -871.11 -4.04 -16.17 16 12 C 0.08 2.39 3.65 86.30 0.32 2.70 16 13 C -0.12 -3.54 3.50 29.85 0.10 -3.43 16 14 C 0.49 21.13 7.67 87.66 0.67 21.80 16 15 O -0.60 -32.15 15.56 -3.02 -0.05 -32.19 16 16 N -0.61 -26.62 2.86 -851.14 -2.43 -29.05 16 17 C 0.08 2.35 10.24 127.77 1.31 3.66 16 18 C 0.26 14.32 5.16 85.63 0.44 14.77 16 19 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 20 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 21 C 0.01 0.38 5.46 84.65 0.46 0.84 16 22 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 23 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 0.99 6.55 -2.38 -0.02 0.97 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.40 1.82 9.12 -74.06 -0.68 1.15 16 35 H 0.07 1.25 7.91 -2.39 -0.02 1.23 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 37 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 1.71 5.81 -2.39 -0.01 1.70 16 39 H 0.07 2.34 6.80 -2.39 -0.02 2.33 16 40 H 0.01 0.49 8.04 -2.39 -0.02 0.47 16 41 H 0.11 2.72 5.46 -2.38 -0.01 2.71 16 42 H 0.12 2.88 8.11 -2.39 -0.02 2.86 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 45 H 0.09 2.12 6.44 -2.39 -0.02 2.10 16 46 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 47 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 48 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -78.02 373.89 -0.49 -78.51 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.25 Total: 11.89 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.44 Total: 6.35 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -6.19 Total: -102.10 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -2.02 Total: -42.40 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -78.02 -0.49 -78.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344117148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.412 kcal (2) G-P(sol) polarization free energy of solvation -78.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds