Wall clock time and date at job start Tue Mar 31 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99813 * 2 1 4 4 C 1.50697 * 109.47520 * 270.00177 * 3 2 1 5 5 H 1.08003 * 119.99868 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00274 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99614 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00107 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47105 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47132 * 119.99589 * 8 6 4 11 11 H 1.48497 * 109.47434 * 240.00012 * 8 6 4 12 12 C 1.34780 * 119.99931 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99686 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99990 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47080 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.47517 * 179.97438 * 15 14 12 17 17 C 1.46900 * 111.00287 * 179.97438 * 16 15 14 18 18 H 1.08997 * 110.53432 * 327.61294 * 17 16 15 19 19 C 1.54953 * 110.52955 * 90.24582 * 17 16 15 20 20 C 1.54889 * 102.78008 * 156.56440 * 19 17 16 21 21 C 1.54270 * 104.19489 * 322.08850 * 20 19 17 22 22 C 1.53874 * 106.59833 * 23.60580 * 21 20 19 23 23 H 1.09001 * 110.02608 * 240.67140 * 22 21 20 24 24 C 1.52997 * 110.03229 * 119.28886 * 22 21 20 25 25 C 1.53000 * 109.47060 * 67.09131 * 24 22 21 26 26 O 1.42903 * 109.46726 * 180.02562 * 25 24 22 27 27 H 1.09000 * 109.46971 * 269.99556 * 1 2 3 28 28 H 1.08999 * 109.47390 * 29.99643 * 1 2 3 29 29 H 1.09000 * 109.47121 * 150.00075 * 1 2 3 30 30 H 1.09006 * 109.47397 * 30.00388 * 3 2 1 31 31 H 1.09000 * 109.47226 * 150.00186 * 3 2 1 32 32 H 0.97006 * 119.99800 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47228 * 60.00390 * 14 12 2 34 34 H 1.08997 * 109.47267 * 300.00300 * 14 12 2 35 35 H 1.09000 * 109.47322 * 59.99666 * 15 14 12 36 36 H 1.08997 * 109.47103 * 300.00140 * 15 14 12 37 37 H 1.00906 * 110.99575 * 56.04497 * 16 15 14 38 38 H 1.09000 * 110.72185 * 38.25337 * 19 17 16 39 39 H 1.09001 * 110.76862 * 274.90231 * 19 17 16 40 40 H 1.08995 * 110.49368 * 203.40525 * 20 19 17 41 41 H 1.09005 * 110.48544 * 80.75961 * 20 19 17 42 42 H 1.08998 * 110.02791 * 264.31925 * 21 20 19 43 43 H 1.08998 * 110.03354 * 142.89430 * 21 20 19 44 44 H 1.09002 * 109.47153 * 307.08812 * 24 22 21 45 45 H 1.09001 * 109.46832 * 187.09003 * 24 22 21 46 46 H 1.09001 * 109.47194 * 299.99650 * 25 24 22 47 47 H 1.08992 * 109.47399 * 59.99823 * 25 24 22 48 48 H 0.96700 * 113.99509 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5550 3.6171 -0.6730 8 14 3.4375 3.4173 -3.4338 9 1 2.8585 2.4179 -4.3672 10 1 2.8004 4.7383 -3.6664 11 1 4.8999 3.5249 -3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6452 -4.9074 0.0001 17 6 2.5697 -6.0491 -0.0005 18 1 3.4798 -5.8038 -0.5479 19 6 2.9079 -6.4752 1.4504 20 6 3.3339 -7.9548 1.2824 21 6 2.3765 -8.5041 0.2047 22 6 1.8912 -7.2929 -0.6108 23 1 0.8076 -7.2019 -0.5353 24 6 2.3030 -7.4486 -2.0761 25 6 1.5412 -8.6207 -2.6980 26 8 1.9263 -8.7665 -4.0664 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0318 4.4431 -0.8502 33 1 0.7585 -2.5299 -0.8903 34 1 0.7591 -2.5302 0.8896 35 1 3.0063 -3.5775 0.8894 36 1 3.0063 -3.5775 -0.8905 37 1 1.0085 -4.9577 -0.7811 38 1 2.0290 -6.3966 2.0903 39 1 3.7300 -5.8791 1.8466 40 1 3.2057 -8.4975 2.2190 41 1 4.3676 -8.0180 0.9423 42 1 1.5285 -9.0005 0.6766 43 1 2.9053 -9.2030 -0.4434 44 1 3.3745 -7.6399 -2.1340 45 1 2.0674 -6.5332 -2.6189 46 1 1.7767 -9.5361 -2.1552 47 1 0.4698 -8.4295 -2.6401 48 1 1.4819 -9.4929 -4.5248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348173804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:42 Heat of formation + Delta-G solvation = -135.365058 kcal Electronic energy + Delta-G solvation = -24313.365284 eV Core-core repulsion = 20786.979107 eV Total energy + Delta-G solvation = -3526.386177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74133 -40.05875 -37.73962 -36.69154 -35.95383 -34.73859 -32.98153 -31.86681 -29.69408 -27.96667 -27.52239 -27.07236 -25.14323 -23.43869 -23.12836 -21.25447 -20.56983 -19.84520 -18.72353 -18.33709 -17.90431 -17.30294 -16.97279 -16.75475 -16.21315 -16.04390 -15.88660 -15.59169 -14.93299 -14.92295 -14.54902 -14.23352 -14.05894 -13.92477 -13.68778 -13.46056 -13.30749 -13.23881 -12.96122 -12.82736 -12.57860 -12.33214 -12.29798 -12.22384 -12.11421 -11.92082 -11.77089 -11.68861 -11.60963 -11.49336 -11.27328 -10.82433 -10.67182 -10.61377 -9.46982 -9.41255 -8.24575 -6.39755 1.34461 1.37029 1.48877 1.84173 2.28906 2.42341 3.04594 3.11591 3.31824 3.59019 3.75210 3.88110 3.98787 4.07261 4.17288 4.19117 4.33271 4.41746 4.42266 4.54303 4.60441 4.63368 4.65936 4.66948 4.73854 4.80197 4.83951 4.90455 4.95911 5.00350 5.04222 5.07389 5.09055 5.15971 5.22010 5.25881 5.32868 5.35215 5.51491 5.54806 5.83327 6.03559 6.04349 6.46401 6.68017 6.79084 6.91253 7.26323 7.48230 8.82780 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002717 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.181010 B =10303.816627 C =11103.144574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.492 3.508 13 O -0.604 6.604 14 C -0.116 4.116 15 C 0.085 3.915 16 N -0.670 5.670 17 C 0.081 3.919 18 H 0.033 0.967 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.080 4.080 23 H 0.094 0.906 24 C -0.116 4.116 25 C 0.076 3.924 26 O -0.602 6.602 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.024 0.976 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.348 0.652 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 -27.610 0.367 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.486 6.486 14 C -0.156 4.156 15 C -0.045 4.045 16 N -0.302 5.302 17 C -0.029 4.029 18 H 0.051 0.949 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.152 4.152 22 C -0.099 4.099 23 H 0.113 0.887 24 C -0.154 4.154 25 C -0.001 4.001 26 O -0.411 6.411 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.167 0.833 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.558 -26.925 1.242 28.598 hybrid contribution 0.769 0.674 -1.724 2.005 sum -8.789 -26.252 -0.482 27.688 Atomic orbital electron populations 1.21950 0.77668 1.04085 1.02667 1.48213 1.08553 1.06364 1.71167 1.18759 0.91088 0.80596 0.96036 1.21736 1.36789 1.06557 0.93019 0.92902 1.25898 0.94881 0.96438 1.02128 1.70062 1.38944 1.14860 1.33044 0.85338 0.77880 0.78463 0.78943 1.19113 1.19205 1.20770 1.21431 0.87803 0.86839 0.75770 1.90634 1.16895 1.88310 1.52734 1.21528 0.98823 0.88772 1.06480 1.21463 0.94602 0.88426 0.99983 1.60606 1.19386 1.00276 1.49902 1.22505 0.93679 0.89963 0.96764 0.94894 1.22506 1.00884 0.96006 0.95760 1.22333 0.99141 0.95014 0.99617 1.22197 0.99599 0.96460 0.96926 1.21796 1.01223 0.94155 0.92731 0.88748 1.21630 1.00313 0.98282 0.95137 1.22269 0.98151 0.98065 0.81623 1.86450 1.71098 1.58285 1.25279 0.91075 0.91691 0.88486 0.95811 0.98637 0.92360 0.86844 0.85970 0.92326 0.96831 0.83297 0.90318 0.93401 0.90311 0.92230 0.90035 0.91071 0.92554 0.92928 0.91952 0.92312 0.75297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.63 16 2 N -0.61 -26.57 2.86 -851.14 -2.43 -29.00 16 3 C 0.26 14.30 5.16 85.63 0.44 14.74 16 4 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.31 5.46 84.66 0.46 0.78 16 7 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 8 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.49 20.96 7.67 87.66 0.67 21.63 16 13 O -0.60 -32.45 15.56 -3.03 -0.05 -32.50 16 14 C -0.12 -3.22 4.51 29.85 0.13 -3.08 16 15 C 0.09 2.44 4.84 86.30 0.42 2.85 16 16 N -0.67 -13.97 6.33 -485.93 -3.08 -17.05 16 17 C 0.08 1.60 2.73 46.01 0.13 1.73 16 18 H 0.03 0.80 7.54 -2.39 -0.02 0.78 16 19 C -0.11 -2.13 6.58 31.91 0.21 -1.92 16 20 C -0.12 -1.75 6.83 31.67 0.22 -1.53 16 21 C -0.11 -1.34 5.95 31.32 0.19 -1.15 16 22 C -0.08 -1.14 2.41 -10.07 -0.02 -1.16 16 23 H 0.09 1.17 7.93 -2.39 -0.02 1.15 16 24 C -0.12 -1.89 4.72 30.59 0.14 -1.74 16 25 C 0.08 0.95 6.87 71.98 0.49 1.45 16 26 O -0.60 -9.53 13.66 -148.98 -2.04 -11.56 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 2.04 8.07 -2.39 -0.02 2.03 16 29 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 30 H 0.02 1.34 8.07 -2.38 -0.02 1.32 16 31 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 32 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 33 H 0.11 2.54 7.40 -2.39 -0.02 2.52 16 34 H 0.12 2.77 8.11 -2.39 -0.02 2.75 16 35 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 36 H 0.01 0.45 8.04 -2.39 -0.02 0.43 16 37 H 0.35 6.08 8.33 -89.69 -0.75 5.33 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.77 6.82 -2.39 -0.02 0.76 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 0.58 6.94 -2.39 -0.02 0.57 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.40 2.40 9.12 -74.06 -0.68 1.73 16 Total: -1.00 -79.37 383.63 -0.73 -80.11 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.49 Total: 14.92 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.03 Total: 4.38 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -5.22 Total: -103.15 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.08 Total: -44.06 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -79.37 -0.73 -80.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348173804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.257 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds