Wall clock time and date at job start Tue Mar 31 2020 04:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.54316 * 2 1 4 4 C 1.53103 * 109.50178 * 239.89739 * 2 1 3 5 5 N 1.47021 * 109.25141 * 183.21566 * 4 2 1 6 6 C 1.46903 * 110.99309 * 182.39202 * 5 4 2 7 7 C 1.53008 * 109.46533 * 170.00173 * 6 5 4 8 8 H 1.08998 * 109.47320 * 60.00295 * 7 6 5 9 9 O 1.42898 * 109.47181 * 299.99552 * 7 6 5 10 10 C 1.53002 * 109.46638 * 180.02562 * 7 6 5 11 11 N 1.46506 * 109.46946 * 184.99928 * 10 7 6 12 12 C 1.36935 * 119.99780 * 89.99672 * 11 10 7 13 13 H 1.07993 * 120.00340 * 304.41258 * 12 11 10 14 14 C 1.38812 * 119.99731 * 124.41285 * 12 11 10 15 15 N 1.31616 * 120.00073 * 164.92720 * 14 12 11 16 16 Si 1.86800 * 119.99998 * 344.92456 * 14 12 11 17 17 H 1.48498 * 109.47268 * 92.12710 * 16 14 12 18 18 H 1.48506 * 109.47424 * 212.12909 * 16 14 12 19 19 H 1.48505 * 109.47102 * 332.12239 * 16 14 12 20 20 C 1.46499 * 119.99900 * 269.99994 * 11 10 7 21 21 C 1.52999 * 117.49865 * 183.06955 * 20 11 10 22 22 C 1.52997 * 117.49920 * 114.44673 * 20 11 10 23 23 C 1.47008 * 110.75202 * 58.61939 * 5 4 2 24 24 C 1.53104 * 109.25847 * 301.37753 * 23 5 4 25 25 H 1.08997 * 109.50802 * 176.78738 * 24 23 5 26 26 C 1.53001 * 109.50548 * 296.91684 * 24 23 5 27 27 O 1.43006 * 109.50573 * 120.11361 * 2 1 3 28 28 H 1.08998 * 109.47202 * 180.10563 * 1 2 3 29 29 H 1.09000 * 109.46931 * 300.10244 * 1 2 3 30 30 H 1.08999 * 109.47413 * 60.10376 * 1 2 3 31 31 H 1.08995 * 109.50869 * 63.28265 * 4 2 1 32 32 H 1.08991 * 109.50611 * 303.14883 * 4 2 1 33 33 H 1.08996 * 109.47573 * 50.00171 * 6 5 4 34 34 H 1.09001 * 109.47224 * 289.99344 * 6 5 4 35 35 H 0.96699 * 114.00201 * 300.00492 * 9 7 6 36 36 H 1.09000 * 109.47256 * 304.99532 * 10 7 6 37 37 H 1.08996 * 109.47237 * 64.99782 * 10 7 6 38 38 H 0.97002 * 120.00213 * 179.97438 * 15 14 12 39 39 H 1.09003 * 115.55076 * 328.77459 * 20 11 10 40 40 H 1.08995 * 117.49666 * 359.97438 * 21 20 11 41 41 H 1.08997 * 117.49831 * 145.01854 * 21 20 11 42 42 H 1.09003 * 117.50057 * 214.98214 * 22 20 11 43 43 H 1.09000 * 117.49876 * 359.97438 * 22 20 11 44 44 H 1.09000 * 109.50958 * 61.31595 * 23 5 4 45 45 H 1.09006 * 109.50403 * 181.44994 * 23 5 4 46 46 H 1.08999 * 109.46769 * 179.78101 * 26 24 23 47 47 H 1.08998 * 109.47252 * 299.78117 * 26 24 23 48 48 H 1.09000 * 109.46939 * 59.78390 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0411 -0.7238 -1.2485 5 7 3.5093 -0.7883 -1.2046 6 6 4.0445 -1.4267 -2.4146 7 6 5.5644 -1.2545 -2.4521 8 1 6.0047 -1.7203 -1.5705 9 8 5.8859 0.1377 -2.4661 10 6 6.1218 -1.9188 -3.7127 11 7 7.5855 -1.8588 -3.6898 12 6 8.3033 -2.8732 -3.1146 13 1 8.1111 -3.1577 -2.0908 14 6 9.2783 -3.5357 -3.8478 15 7 10.1630 -4.2923 -3.2336 16 14 9.3345 -3.3536 -5.7060 17 1 10.2409 -2.2339 -6.0665 18 1 9.8379 -4.6126 -6.3118 19 1 7.9694 -3.0697 -6.2171 20 6 8.2809 -0.7135 -4.2821 21 6 9.8106 -0.7433 -4.2908 22 6 9.0692 0.1987 -3.3401 23 6 3.9639 -1.4884 0.0055 24 6 3.4334 -0.7569 1.2415 25 1 3.7201 -1.3044 2.1394 26 6 4.0230 0.6540 1.2923 27 8 2.0075 -0.6763 1.1661 28 1 -0.3633 -1.0276 0.0019 29 1 -0.3633 0.5154 0.8891 30 1 -0.3634 0.5122 -0.8909 31 1 1.7272 -0.1793 -2.1391 32 1 1.6331 -1.7341 -1.2762 33 1 3.6042 -0.9610 -3.2962 34 1 3.7994 -2.4887 -2.4039 35 1 5.5256 0.6170 -3.2248 36 1 5.8014 -2.9601 -3.7466 37 1 5.7504 -1.3955 -4.5937 38 1 10.8440 -4.7555 -3.7459 39 1 7.7814 -0.2484 -5.1320 40 1 10.2995 -1.6148 -3.8555 41 1 10.3177 -0.2978 -5.1466 42 1 9.0886 1.2639 -3.5703 43 1 9.0700 -0.0531 -2.2796 44 1 3.5866 -2.5110 -0.0021 45 1 5.0536 -1.5020 0.0304 46 1 3.6419 1.1756 2.1703 47 1 5.1097 0.5919 1.3497 48 1 3.7372 1.1997 0.3930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358523165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:32 Heat of formation + Delta-G solvation = -35.713132 kcal Electronic energy + Delta-G solvation = -26117.664853 eV Core-core repulsion = 22595.599908 eV Total energy + Delta-G solvation = -3522.064945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06450 -37.90198 -36.62073 -34.93795 -33.45362 -32.84203 -31.69169 -30.51023 -28.90800 -26.92504 -26.01691 -24.05261 -22.96728 -22.33858 -21.43125 -20.70757 -19.77816 -19.47418 -16.91891 -16.55532 -16.47604 -15.68935 -15.58381 -15.23113 -14.92808 -14.60691 -14.57111 -14.27102 -13.72691 -13.51417 -13.35875 -13.00757 -12.69731 -12.61403 -12.24173 -12.09820 -11.93076 -11.82331 -11.73385 -11.55744 -11.32638 -11.14609 -11.00973 -10.68925 -10.45511 -10.33911 -10.31222 -10.24808 -9.86947 -9.67783 -9.43088 -9.33345 -9.05278 -8.39859 -8.24437 -6.38828 -6.01847 -3.71810 3.38630 3.46734 3.53464 3.63031 3.79822 4.51715 4.66856 4.77468 4.84298 4.94793 4.99030 5.02713 5.05959 5.13177 5.26692 5.33322 5.34423 5.38965 5.39217 5.48827 5.56590 5.70028 5.72904 5.80368 5.85976 5.89925 5.93215 5.95572 5.98663 6.01166 6.11456 6.17876 6.27127 6.36922 6.57540 6.63080 6.64936 6.73560 7.01686 7.03475 7.16363 7.19342 7.39337 8.09268 8.31196 8.50429 9.02509 9.62995 10.14583 11.07140 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.003702 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.976628 B = 7561.292182 C = 7630.672769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.023 3.977 5 N -0.520 5.520 6 C 0.023 3.977 7 C 0.095 3.905 8 H 0.095 0.905 9 O -0.536 6.536 10 C 0.123 3.877 11 N -0.566 5.566 12 C -0.284 4.284 13 H 0.067 0.933 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.887 3.113 17 H -0.270 1.270 18 H -0.305 1.305 19 H -0.273 1.273 20 C 0.118 3.882 21 C -0.206 4.206 22 C -0.196 4.196 23 C 0.022 3.978 24 C 0.092 3.908 25 H 0.102 0.898 26 C -0.172 4.172 27 O -0.381 6.381 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.356 0.644 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.094 0.906 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 9.069 3.121 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.087 0.913 4 C -0.105 4.105 5 N -0.244 5.244 6 C -0.106 4.106 7 C 0.033 3.967 8 H 0.113 0.887 9 O -0.339 6.339 10 C -0.004 4.004 11 N -0.285 5.285 12 C -0.413 4.413 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.195 1.195 18 H -0.233 1.233 19 H -0.197 1.197 20 C 0.011 3.989 21 C -0.244 4.244 22 C -0.236 4.236 23 C -0.106 4.106 24 C 0.034 3.966 25 H 0.120 0.880 26 C -0.229 4.229 27 O -0.301 6.301 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.201 0.799 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.056 0.944 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.747 9.146 3.816 18.606 hybrid contribution -0.170 -0.714 -1.758 1.905 sum -15.916 8.433 2.058 18.129 Atomic orbital electron populations 1.21745 0.93231 1.02757 1.02418 1.22116 0.94284 0.96124 0.84591 0.91319 1.22818 0.88829 0.99816 0.99072 1.62161 1.07393 1.52829 1.02050 1.22955 0.98299 0.97204 0.92158 1.22661 0.89726 0.83004 1.01353 0.88710 1.86639 1.78146 1.19985 1.49098 1.21562 0.85609 0.99147 0.94083 1.43347 0.99571 1.18194 1.67351 1.18498 1.17183 1.09656 0.95924 0.91560 1.25862 0.96242 0.94283 0.98146 1.69866 1.15943 1.31945 1.35983 0.86760 0.78655 0.76300 0.86703 1.19535 1.23350 1.19742 1.21143 0.90097 0.91526 0.96160 1.23542 0.95944 1.03551 1.01401 1.23198 1.07809 0.94483 0.98130 1.22825 1.02077 0.95373 0.90296 1.22254 0.80253 0.96701 0.97399 0.88004 1.22239 1.01683 0.96691 1.02297 1.88002 1.21220 1.78151 1.42719 0.92042 0.91732 0.91115 0.90119 0.94445 0.90905 0.94203 0.79910 0.92086 0.94456 0.92550 0.90119 0.86471 0.91027 0.91410 0.89339 0.94382 0.88825 0.92932 0.91394 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 2 C 0.09 0.93 3.03 -26.68 -0.08 0.85 16 3 H 0.07 0.75 6.49 -51.93 -0.34 0.42 16 4 C 0.02 0.26 4.93 -3.70 -0.02 0.24 16 5 N -0.52 -6.68 3.96 -234.30 -0.93 -7.61 16 6 C 0.02 0.30 4.62 -3.82 -0.02 0.28 16 7 C 0.09 1.54 3.09 -26.73 -0.08 1.46 16 8 H 0.10 1.82 6.52 -51.93 -0.34 1.49 16 9 O -0.54 -8.82 12.76 -35.23 -0.45 -9.27 16 10 C 0.12 2.29 5.37 -4.04 -0.02 2.27 16 11 N -0.57 -12.89 2.01 -165.66 -0.33 -13.23 16 12 C -0.28 -7.68 9.17 -15.06 -0.14 -7.82 16 13 H 0.07 1.99 8.06 -52.49 -0.42 1.57 16 14 C 0.06 1.60 3.75 -17.43 -0.07 1.53 16 15 N -0.90 -26.66 13.97 55.49 0.78 -25.88 16 16 Si 0.89 21.97 24.85 -169.99 -4.22 17.75 16 17 H -0.27 -6.42 5.80 56.52 0.33 -6.09 16 18 H -0.31 -7.74 7.11 56.52 0.40 -7.33 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 20 C 0.12 2.52 4.75 -67.93 -0.32 2.20 16 21 C -0.21 -4.60 6.68 -26.73 -0.18 -4.78 16 22 C -0.20 -4.02 10.36 -26.73 -0.28 -4.30 16 23 C 0.02 0.30 4.85 -3.71 -0.02 0.28 16 24 C 0.09 1.11 3.92 -26.68 -0.10 1.01 16 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 26 C -0.17 -2.02 8.88 37.16 0.33 -1.69 16 27 O -0.38 -4.86 10.28 -35.23 -0.36 -5.22 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.36 4.77 9.04 45.56 0.41 5.19 16 36 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 37 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.12 3.04 5.08 -51.93 -0.26 2.77 16 41 H 0.07 1.47 7.85 -51.93 -0.41 1.06 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.38 6.38 -51.93 -0.33 1.05 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.93 6.13 -51.93 -0.32 0.61 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -30.05 364.61 -8.63 -38.68 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.96 Total: 8.61 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.64 Total: -9.32 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.49 Total: -46.72 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.81 Total: -14.49 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.22 Total: 17.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.05 -8.63 -38.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358523165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.971 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds