Wall clock time and date at job start Tue Mar 31 2020 04:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.54316 * 2 1 4 4 C 1.53103 * 109.50178 * 239.89739 * 2 1 3 5 5 N 1.47021 * 109.25141 * 183.21566 * 4 2 1 6 6 C 1.46903 * 110.99309 * 182.39202 * 5 4 2 7 7 C 1.53008 * 109.46533 * 170.00173 * 6 5 4 8 8 H 1.08998 * 109.47320 * 60.00295 * 7 6 5 9 9 O 1.42898 * 109.47181 * 299.99552 * 7 6 5 10 10 C 1.53002 * 109.46638 * 180.02562 * 7 6 5 11 11 N 1.46506 * 109.46946 * 184.99928 * 10 7 6 12 12 C 1.36935 * 119.99780 * 89.99672 * 11 10 7 13 13 H 1.07993 * 120.00340 * 304.41258 * 12 11 10 14 14 C 1.38812 * 119.99731 * 124.41285 * 12 11 10 15 15 N 1.31616 * 120.00073 * 164.92720 * 14 12 11 16 16 Si 1.86800 * 119.99998 * 344.92456 * 14 12 11 17 17 H 1.48498 * 109.47268 * 92.12710 * 16 14 12 18 18 H 1.48506 * 109.47424 * 212.12909 * 16 14 12 19 19 H 1.48505 * 109.47102 * 332.12239 * 16 14 12 20 20 C 1.46499 * 119.99900 * 269.99994 * 11 10 7 21 21 C 1.52999 * 117.49865 * 183.06955 * 20 11 10 22 22 C 1.52997 * 117.49920 * 114.44673 * 20 11 10 23 23 C 1.47008 * 110.75202 * 58.61939 * 5 4 2 24 24 C 1.53104 * 109.25847 * 301.37753 * 23 5 4 25 25 H 1.08997 * 109.50802 * 176.78738 * 24 23 5 26 26 C 1.53001 * 109.50548 * 296.91684 * 24 23 5 27 27 O 1.43006 * 109.50573 * 120.11361 * 2 1 3 28 28 H 1.08998 * 109.47202 * 180.10563 * 1 2 3 29 29 H 1.09000 * 109.46931 * 300.10244 * 1 2 3 30 30 H 1.08999 * 109.47413 * 60.10376 * 1 2 3 31 31 H 1.08995 * 109.50869 * 63.28265 * 4 2 1 32 32 H 1.08991 * 109.50611 * 303.14883 * 4 2 1 33 33 H 1.08996 * 109.47573 * 50.00171 * 6 5 4 34 34 H 1.09001 * 109.47224 * 289.99344 * 6 5 4 35 35 H 0.96699 * 114.00201 * 300.00492 * 9 7 6 36 36 H 1.09000 * 109.47256 * 304.99532 * 10 7 6 37 37 H 1.08996 * 109.47237 * 64.99782 * 10 7 6 38 38 H 0.97002 * 120.00213 * 179.97438 * 15 14 12 39 39 H 1.09003 * 115.55076 * 328.77459 * 20 11 10 40 40 H 1.08995 * 117.49666 * 359.97438 * 21 20 11 41 41 H 1.08997 * 117.49831 * 145.01854 * 21 20 11 42 42 H 1.09003 * 117.50057 * 214.98214 * 22 20 11 43 43 H 1.09000 * 117.49876 * 359.97438 * 22 20 11 44 44 H 1.09000 * 109.50958 * 61.31595 * 23 5 4 45 45 H 1.09006 * 109.50403 * 181.44994 * 23 5 4 46 46 H 1.08999 * 109.46769 * 179.78101 * 26 24 23 47 47 H 1.08998 * 109.47252 * 299.78117 * 26 24 23 48 48 H 1.09000 * 109.46939 * 59.78390 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0411 -0.7238 -1.2485 5 7 3.5093 -0.7883 -1.2046 6 6 4.0445 -1.4267 -2.4146 7 6 5.5644 -1.2545 -2.4521 8 1 6.0047 -1.7203 -1.5705 9 8 5.8859 0.1377 -2.4661 10 6 6.1218 -1.9188 -3.7127 11 7 7.5855 -1.8588 -3.6898 12 6 8.3033 -2.8732 -3.1146 13 1 8.1111 -3.1577 -2.0908 14 6 9.2783 -3.5357 -3.8478 15 7 10.1630 -4.2923 -3.2336 16 14 9.3345 -3.3536 -5.7060 17 1 10.2409 -2.2339 -6.0665 18 1 9.8379 -4.6126 -6.3118 19 1 7.9694 -3.0697 -6.2171 20 6 8.2809 -0.7135 -4.2821 21 6 9.8106 -0.7433 -4.2908 22 6 9.0692 0.1987 -3.3401 23 6 3.9639 -1.4884 0.0055 24 6 3.4334 -0.7569 1.2415 25 1 3.7201 -1.3044 2.1394 26 6 4.0230 0.6540 1.2923 27 8 2.0075 -0.6763 1.1661 28 1 -0.3633 -1.0276 0.0019 29 1 -0.3633 0.5154 0.8891 30 1 -0.3634 0.5122 -0.8909 31 1 1.7272 -0.1793 -2.1391 32 1 1.6331 -1.7341 -1.2762 33 1 3.6042 -0.9610 -3.2962 34 1 3.7994 -2.4887 -2.4039 35 1 5.5256 0.6170 -3.2248 36 1 5.8014 -2.9601 -3.7466 37 1 5.7504 -1.3955 -4.5937 38 1 10.8440 -4.7555 -3.7459 39 1 7.7814 -0.2484 -5.1320 40 1 10.2995 -1.6148 -3.8555 41 1 10.3177 -0.2978 -5.1466 42 1 9.0886 1.2639 -3.5703 43 1 9.0700 -0.0531 -2.2796 44 1 3.5866 -2.5110 -0.0021 45 1 5.0536 -1.5020 0.0304 46 1 3.6419 1.1756 2.1703 47 1 5.1097 0.5919 1.3497 48 1 3.7372 1.1997 0.3930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358523165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:31 Heat of formation + Delta-G solvation = -57.801644 kcal Electronic energy + Delta-G solvation = -26118.622683 eV Core-core repulsion = 22595.599908 eV Total energy + Delta-G solvation = -3523.022775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05019 -39.42063 -38.06873 -36.07884 -34.68601 -34.32233 -33.58523 -31.56838 -30.18917 -27.87065 -27.50344 -25.65989 -23.95799 -23.59248 -23.15323 -21.94164 -21.62131 -20.42428 -18.80257 -17.78320 -17.50316 -16.91331 -16.78226 -16.55184 -16.39348 -16.16977 -15.77485 -15.47070 -15.13925 -15.11874 -14.73783 -14.32203 -13.89613 -13.77572 -13.48962 -13.32205 -13.10437 -12.95904 -12.91767 -12.77088 -12.65093 -12.51880 -12.30442 -12.11178 -12.06423 -12.01374 -11.81566 -11.59418 -11.25279 -11.23348 -10.89323 -10.81750 -10.53377 -10.37591 -9.29467 -8.33224 -8.08491 -5.86023 1.43747 1.44872 1.57625 2.46778 2.67283 2.82580 3.03624 3.23381 3.46721 3.76126 3.84813 3.86247 3.93002 4.06810 4.19919 4.22632 4.28041 4.32567 4.39947 4.42093 4.46606 4.48702 4.57889 4.60086 4.67649 4.72625 4.75440 4.79181 4.80208 4.96523 4.98623 5.05287 5.05898 5.06901 5.14590 5.27261 5.33468 5.39990 5.41753 5.60953 5.94262 5.98956 6.04050 6.26976 6.27617 7.13151 7.20275 7.60819 8.11817 8.96119 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.003702 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.976628 B = 7561.292182 C = 7630.672769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.069 0.931 4 C 0.025 3.975 5 N -0.523 5.523 6 C 0.033 3.967 7 C 0.112 3.888 8 H 0.053 0.947 9 O -0.548 6.548 10 C 0.119 3.881 11 N -0.577 5.577 12 C -0.274 4.274 13 H 0.015 0.985 14 C 0.011 3.989 15 N -0.949 5.949 16 Si 0.949 3.051 17 H -0.251 1.251 18 H -0.316 1.316 19 H -0.258 1.258 20 C 0.117 3.883 21 C -0.222 4.222 22 C -0.180 4.180 23 C 0.025 3.975 24 C 0.093 3.907 25 H 0.109 0.891 26 C -0.162 4.162 27 O -0.394 6.394 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.034 0.966 35 H 0.374 0.626 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.029 0.971 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.519 11.567 0.832 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.024 3.976 3 H 0.087 0.913 4 C -0.103 4.103 5 N -0.248 5.248 6 C -0.095 4.095 7 C 0.050 3.950 8 H 0.071 0.929 9 O -0.353 6.353 10 C -0.007 4.007 11 N -0.297 5.297 12 C -0.404 4.404 13 H 0.032 0.968 14 C -0.187 4.187 15 N -0.590 5.590 16 Si 0.775 3.225 17 H -0.176 1.176 18 H -0.245 1.245 19 H -0.182 1.182 20 C 0.010 3.990 21 C -0.260 4.260 22 C -0.220 4.220 23 C -0.103 4.103 24 C 0.035 3.965 25 H 0.126 0.874 26 C -0.220 4.220 27 O -0.314 6.314 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.052 0.948 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.050 11.683 1.523 21.555 hybrid contribution 0.509 -1.442 -0.925 1.787 sum -17.540 10.242 0.598 20.320 Atomic orbital electron populations 1.21749 0.91253 1.02938 1.03685 1.22319 0.95797 0.95751 0.83715 0.91323 1.22903 0.87201 0.99954 1.00277 1.62148 1.08837 1.52345 1.01426 1.22785 0.95900 0.97331 0.93513 1.22190 0.91603 0.82750 0.98432 0.92868 1.86612 1.78665 1.19720 1.50305 1.21729 0.83106 0.99370 0.96472 1.43452 1.01172 1.17893 1.67222 1.18209 1.17476 1.10654 0.94036 0.96757 1.26470 0.95693 0.94036 1.02512 1.70002 1.17255 1.34059 1.37731 0.85776 0.79476 0.76257 0.81003 1.17566 1.24496 1.18246 1.21445 0.89488 0.90903 0.97119 1.23464 0.96776 1.02977 1.02775 1.23097 1.06724 0.96231 0.95940 1.22733 1.00693 0.95306 0.91584 1.22249 0.80400 0.96866 0.97002 0.87354 1.22139 1.00967 0.96394 1.02477 1.87997 1.21038 1.78519 1.43812 0.92373 0.91456 0.88899 0.87921 0.94942 0.88081 0.94769 0.77878 0.93310 0.90845 0.92708 0.86288 0.90622 0.88497 0.87721 0.92715 0.95317 0.91111 0.91750 0.92378 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.57 71.98 0.69 -1.28 16 2 C 0.08 1.59 3.03 30.63 0.09 1.69 16 3 H 0.07 1.35 6.49 -2.39 -0.02 1.34 16 4 C 0.02 0.49 4.93 86.31 0.43 0.91 16 5 N -0.52 -12.80 3.96 -895.18 -3.54 -16.35 16 6 C 0.03 0.83 4.62 86.31 0.40 1.23 16 7 C 0.11 3.61 3.09 30.60 0.09 3.70 16 8 H 0.05 2.17 6.52 -2.39 -0.02 2.16 16 9 O -0.55 -17.01 12.76 -148.98 -1.90 -18.91 16 10 C 0.12 4.25 5.37 86.38 0.46 4.71 16 11 N -0.58 -25.96 2.01 -678.04 -1.37 -27.32 16 12 C -0.27 -15.39 9.17 84.03 0.77 -14.62 16 13 H 0.01 0.96 8.06 -2.91 -0.02 0.93 16 14 C 0.01 0.63 3.75 84.86 0.32 0.95 16 15 N -0.95 -58.90 13.97 21.65 0.30 -58.60 16 16 Si 0.95 45.12 24.85 68.60 1.70 46.82 16 17 H -0.25 -11.10 5.80 99.48 0.58 -10.52 16 18 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 20 C 0.12 4.67 4.75 44.99 0.21 4.88 16 21 C -0.22 -9.50 6.68 30.59 0.20 -9.30 16 22 C -0.18 -7.05 10.36 30.59 0.32 -6.73 16 23 C 0.03 0.69 4.85 86.32 0.42 1.11 16 24 C 0.09 2.24 3.92 30.63 0.12 2.36 16 25 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 26 C -0.16 -3.74 8.88 71.98 0.64 -3.10 16 27 O -0.39 -9.61 10.28 -148.98 -1.53 -11.15 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 32 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.98 8.04 -2.39 -0.02 1.96 16 34 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 35 H 0.37 8.58 9.04 -74.06 -0.67 7.91 16 36 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 37 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.12 3.92 8.14 -2.39 -0.02 3.91 16 40 H 0.08 3.95 5.08 -2.39 -0.01 3.94 16 41 H 0.10 3.63 7.85 -2.39 -0.02 3.61 16 42 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 2.24 6.38 -2.38 -0.02 2.23 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.07 1.62 6.13 -2.39 -0.01 1.60 16 Total: -1.00 -68.31 364.61 -1.04 -69.35 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.12 Total: 29.62 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 5.17 Total: -13.47 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -4.61 Total: -102.27 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -3.43 Total: -30.05 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.70 Total: 46.82 kcal Total: -68.31 -1.04 -69.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358523165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.548 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds