Wall clock time and date at job start Tue Mar 31 2020 04:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46795 * 2 1 4 4 C 1.46500 * 119.99630 * 269.99726 * 3 2 1 5 5 C 1.50697 * 109.47172 * 270.00316 * 4 3 2 6 6 H 1.08000 * 120.00619 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99888 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99797 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47196 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46844 * 119.99681 * 9 7 5 12 12 H 1.48497 * 109.46952 * 239.99570 * 9 7 5 13 13 C 1.34773 * 120.00032 * 90.00290 * 3 2 1 14 14 O 1.21276 * 120.00025 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00007 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47100 * 180.02562 * 15 13 3 17 17 C 1.39785 * 110.99635 * 293.95399 * 16 15 13 18 18 C 1.54431 * 111.75941 * 189.13394 * 17 16 15 19 19 C 1.50749 * 109.03658 * 282.60881 * 18 17 16 20 20 C 1.54166 * 112.61823 * 93.01034 * 19 18 17 21 21 C 1.52999 * 108.98442 * 197.84571 * 20 19 18 22 22 O 1.42902 * 108.97931 * 79.12519 * 20 19 18 23 23 C 1.53820 * 111.96819 * 318.48865 * 20 19 18 24 24 C 1.47629 * 111.00125 * 62.85147 * 16 15 13 25 25 H 1.09009 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47330 * 299.99596 * 1 2 3 27 27 H 1.08998 * 109.47259 * 60.00498 * 1 2 3 28 28 H 1.09000 * 109.47406 * 239.99854 * 2 1 3 29 29 H 1.08998 * 109.47259 * 119.99502 * 2 1 3 30 30 H 1.08995 * 109.47474 * 30.00580 * 4 3 2 31 31 H 1.08999 * 109.46899 * 149.99913 * 4 3 2 32 32 H 0.96995 * 120.00050 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46840 * 60.00133 * 15 13 3 34 34 H 1.08998 * 109.46983 * 300.00008 * 15 13 3 35 35 H 1.08998 * 109.01992 * 309.72373 * 17 16 15 36 36 H 1.09001 * 109.02181 * 68.55125 * 17 16 15 37 37 H 1.09002 * 109.54655 * 42.47626 * 18 17 16 38 38 H 1.09000 * 109.54418 * 162.73772 * 18 17 16 39 39 H 1.09006 * 108.85396 * 332.19929 * 19 18 17 40 40 H 1.09004 * 108.85311 * 213.82355 * 19 18 17 41 41 H 1.09004 * 109.46876 * 182.45796 * 21 20 19 42 42 H 1.09004 * 109.47169 * 302.45504 * 21 20 19 43 43 H 1.09002 * 109.47155 * 62.45760 * 21 20 19 44 44 H 0.96699 * 114.00055 * 57.54875 * 22 20 19 45 45 H 1.09003 * 109.04892 * 198.48868 * 23 20 19 46 46 H 1.08999 * 108.99206 * 79.55907 * 23 20 19 47 47 H 1.08995 * 109.75116 * 269.96131 * 24 16 15 48 48 H 1.09001 * 109.74538 * 30.64134 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1493 2.3905 -2.8776 8 7 3.3492 3.1264 -3.6177 9 14 5.9137 2.0975 -3.4164 10 1 6.6014 1.2424 -2.4159 11 1 5.9216 1.4188 -4.7373 12 1 6.6208 3.3988 -3.5243 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2066 3.5888 17 6 3.6762 2.4956 3.6257 18 6 4.0670 3.2512 4.9146 19 6 3.6562 4.6955 4.7816 20 6 2.2546 4.9692 5.3626 21 6 1.7362 6.2972 4.8072 22 8 2.3524 5.0688 6.7848 23 6 1.2564 3.8542 5.0066 24 6 1.4267 3.3901 3.5818 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0954 3.1410 -1.1385 32 1 3.6752 3.5169 -4.4436 33 1 2.6212 0.4187 2.5302 34 1 0.9432 1.0126 2.5299 35 1 4.2379 1.5629 3.5764 36 1 3.9329 3.1095 2.7623 37 1 3.5573 2.8042 5.7681 38 1 5.1456 3.1908 5.0598 39 1 3.6590 4.9668 3.7259 40 1 4.3821 5.3179 5.3050 41 1 0.7639 6.5200 5.2467 42 1 2.4381 7.0935 5.0552 43 1 1.6373 6.2243 3.7242 44 1 2.9646 5.7522 7.0900 45 1 0.2417 4.2294 5.1399 46 1 1.4141 3.0096 5.6773 47 1 1.8796 4.1837 2.9877 48 1 0.4566 3.1238 3.1621 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369392313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:59 Heat of formation + Delta-G solvation = -84.769246 kcal Electronic energy + Delta-G solvation = -26273.826683 eV Core-core repulsion = 22749.634505 eV Total energy + Delta-G solvation = -3524.192178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31604 -38.78189 -36.74214 -35.16684 -33.16280 -32.72274 -32.21606 -30.11711 -29.26057 -27.77855 -26.35888 -24.81101 -23.47708 -23.03574 -22.29989 -20.62301 -19.26982 -18.34534 -16.76347 -16.50892 -16.36495 -16.12776 -15.53560 -15.24959 -15.04203 -14.53810 -14.36813 -13.94838 -13.65128 -13.37996 -13.05212 -12.96125 -12.75244 -12.34662 -12.29169 -12.07161 -11.93070 -11.82372 -11.61570 -11.46838 -11.29901 -11.23170 -11.03089 -10.89910 -10.81488 -10.69175 -10.57086 -10.34054 -10.15744 -10.05154 -9.79305 -9.63220 -9.47056 -8.46733 -7.68864 -7.66700 -6.07272 -4.11914 3.26763 3.33337 3.35911 3.40636 3.92280 4.04413 4.30017 4.42199 4.71827 4.80041 4.91174 5.07598 5.15565 5.27545 5.27620 5.33163 5.37640 5.54581 5.57410 5.61006 5.65871 5.70935 5.75956 5.78868 5.81962 5.90704 6.01781 6.03430 6.10256 6.13586 6.20266 6.22079 6.23577 6.31778 6.46912 6.52599 6.59805 7.01303 7.23324 7.41953 7.53557 7.59736 7.65625 7.89381 8.21269 8.41127 8.87541 9.06527 9.53429 11.00763 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.004273 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.595948 B = 6550.913936 C = 7340.300388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.474 3.526 14 O -0.542 6.542 15 C 0.037 3.963 16 N -0.528 5.528 17 C 0.052 3.948 18 C -0.110 4.110 19 C -0.145 4.145 20 C 0.132 3.868 21 C -0.180 4.180 22 O -0.564 6.564 23 C -0.100 4.100 24 C 0.064 3.936 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.371 0.629 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 -1.568 16.321 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.259 3.741 14 O -0.421 6.421 15 C -0.094 4.094 16 N -0.251 5.251 17 C -0.077 4.077 18 C -0.148 4.148 19 C -0.183 4.183 20 C 0.092 3.908 21 C -0.238 4.238 22 O -0.370 6.370 23 C -0.138 4.138 24 C -0.063 4.063 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.217 0.783 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.701 -1.557 16.513 17.240 hybrid contribution 1.602 0.700 -1.309 2.184 sum -3.099 -0.857 15.204 15.541 Atomic orbital electron populations 1.22212 0.96755 1.01453 1.02251 1.21419 0.93530 0.84233 1.02677 1.48394 1.63184 1.13197 1.07983 1.19239 0.96188 0.93559 0.78396 1.21458 0.96907 1.31736 1.06191 0.92545 1.24934 0.97802 0.94939 0.96418 1.69939 1.35581 1.33534 1.14331 0.86464 0.84700 0.78042 0.78346 1.19831 1.20935 1.20911 1.21623 0.78702 0.87508 0.86230 1.90602 1.46189 1.18214 1.87063 1.22360 1.03163 0.96572 0.87299 1.59395 1.06150 1.18495 1.41021 1.21204 0.88293 1.00292 0.97945 1.21366 1.00226 0.94708 0.98476 1.22134 0.95890 0.97775 1.02485 1.21716 0.94339 0.94795 0.79920 1.22579 1.01504 0.97210 1.02503 1.86533 1.67937 1.60748 1.21787 1.21309 0.97272 0.97689 0.97541 1.21793 0.96454 0.92627 0.95415 0.92123 0.93059 0.92137 0.90038 0.91659 0.95212 0.94092 0.92799 0.88611 0.88535 0.91996 0.92306 0.90785 0.91871 0.90661 0.92410 0.92016 0.92728 0.91188 0.78275 0.91739 0.89858 0.91353 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.15 2.46 -175.06 -0.43 -12.58 16 4 C 0.25 6.32 5.16 -5.20 -0.03 6.29 16 5 C -0.52 -14.72 9.39 -34.44 -0.32 -15.04 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.47 9.33 7.11 -10.99 -0.08 9.26 16 14 O -0.54 -12.69 11.86 5.56 0.07 -12.62 16 15 C 0.04 0.55 4.19 -4.97 -0.02 0.53 16 16 N -0.53 -7.71 4.11 -241.45 -0.99 -8.70 16 17 C 0.05 0.79 4.57 -6.74 -0.03 0.76 16 18 C -0.11 -1.42 5.65 -27.11 -0.15 -1.57 16 19 C -0.15 -1.81 4.32 -27.25 -0.12 -1.93 16 20 C 0.13 1.57 0.83 -89.58 -0.07 1.50 16 21 C -0.18 -1.99 8.48 37.16 0.32 -1.68 16 22 O -0.56 -6.44 12.93 -35.23 -0.46 -6.90 16 23 C -0.10 -1.27 4.46 -27.40 -0.12 -1.39 16 24 C 0.06 0.92 4.26 -4.52 -0.02 0.90 16 25 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 30 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.10 1.28 7.18 -51.93 -0.37 0.91 16 34 H 0.10 1.22 7.04 -51.93 -0.37 0.86 16 35 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 36 H 0.06 1.11 5.26 -51.93 -0.27 0.84 16 37 H 0.07 0.97 7.11 -51.93 -0.37 0.60 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.11 6.42 -51.93 -0.33 0.78 16 40 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 41 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.85 7.39 -51.93 -0.38 0.47 16 44 H 0.37 2.87 8.92 45.56 0.41 3.28 16 45 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 46 H 0.08 1.12 7.25 -51.93 -0.38 0.75 16 47 H 0.07 1.16 4.57 -51.93 -0.24 0.92 16 48 H 0.07 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -32.30 362.27 -8.56 -40.86 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.53 Total: 4.37 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.39 Total: -0.92 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.69 Total: -47.03 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.39 Total: -19.52 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.30 -8.56 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369392313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.909 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds