Wall clock time and date at job start Tue Mar 31 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48504 * 109.46703 * 274.27872 * 3 2 1 5 5 H 1.48499 * 109.47303 * 34.27188 * 3 2 1 6 6 H 1.48493 * 109.47310 * 154.27947 * 3 2 1 7 7 C 1.37873 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00605 * 354.66902 * 7 2 1 9 9 C 1.50710 * 119.99981 * 174.66499 * 7 2 1 10 10 C 1.53118 * 109.52367 * 215.44546 * 9 7 2 11 11 C 1.53036 * 109.27688 * 182.44056 * 10 9 7 12 12 N 1.46845 * 109.52497 * 59.17444 * 11 10 9 13 13 C 1.46901 * 111.00114 * 174.15901 * 12 11 10 14 14 C 1.53003 * 109.47301 * 293.81529 * 13 12 11 15 15 H 1.09005 * 109.46924 * 61.13583 * 14 13 12 16 16 O 1.42898 * 109.46781 * 301.13997 * 14 13 12 17 17 C 1.52990 * 109.47007 * 181.13735 * 14 13 12 18 18 N 1.46906 * 109.47225 * 184.99918 * 17 14 13 19 19 C 1.47018 * 110.99465 * 66.31707 * 18 17 14 20 20 C 1.53099 * 109.25283 * 182.35313 * 19 18 17 21 21 O 1.43012 * 109.29438 * 303.21853 * 20 19 18 22 22 C 1.43019 * 113.73930 * 58.64920 * 21 20 19 23 23 C 1.47008 * 111.00428 * 190.00113 * 18 17 14 24 24 C 1.46842 * 111.19818 * 298.26004 * 12 11 10 25 25 C 1.53035 * 109.52605 * 61.74447 * 24 12 11 26 26 H 0.96999 * 120.00422 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.56994 * 335.60440 * 9 7 2 28 28 H 1.08994 * 109.50551 * 62.49669 * 10 9 7 29 29 H 1.09007 * 109.53110 * 302.39948 * 10 9 7 30 30 H 1.09006 * 109.45922 * 299.15738 * 11 10 9 31 31 H 1.09001 * 109.45641 * 179.19015 * 11 10 9 32 32 H 1.08999 * 109.47194 * 173.81289 * 13 12 11 33 33 H 1.08999 * 109.46902 * 53.81557 * 13 12 11 34 34 H 0.96704 * 114.00044 * 299.99220 * 16 14 13 35 35 H 1.08998 * 109.47417 * 64.99940 * 17 14 13 36 36 H 1.09001 * 109.47663 * 304.99776 * 17 14 13 37 37 H 1.09003 * 109.47458 * 62.44338 * 19 18 17 38 38 H 1.09000 * 109.54906 * 302.31208 * 19 18 17 39 39 H 1.09007 * 109.50469 * 183.26257 * 20 19 18 40 40 H 1.09002 * 109.50684 * 63.17629 * 20 19 18 41 41 H 1.09002 * 109.50519 * 61.26442 * 22 21 20 42 42 H 1.08999 * 109.50996 * 181.35043 * 22 21 20 43 43 H 1.09004 * 109.50709 * 57.66955 * 23 18 17 44 44 H 1.09009 * 109.50517 * 297.54327 * 23 18 17 45 45 H 1.09012 * 109.46204 * 181.75562 * 24 12 11 46 46 H 1.08997 * 109.46288 * 301.72021 * 24 12 11 47 47 H 1.09003 * 109.50464 * 180.87917 * 25 24 12 48 48 H 1.09003 * 109.50699 * 60.75707 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4061 2.0986 -1.3962 5 1 1.4946 2.6249 0.7884 6 1 3.5889 1.4158 0.6076 7 6 2.0045 -1.1940 0.0005 8 1 1.4680 -2.1274 0.0878 9 6 3.5067 -1.1970 -0.1208 10 6 3.9515 -2.4116 -0.9401 11 6 5.4800 -2.4427 -1.0084 12 7 6.0305 -2.5183 0.3509 13 6 7.4892 -2.6892 0.3194 14 6 7.8300 -4.0531 -0.2845 15 1 7.4530 -4.1026 -1.3061 16 8 7.2243 -5.0848 0.4972 17 6 9.3480 -4.2429 -0.2912 18 7 9.6816 -5.4977 -0.9785 19 6 9.3376 -5.4241 -2.4059 20 6 9.6462 -6.7687 -3.0696 21 8 11.0228 -7.0944 -2.8597 22 6 11.3914 -7.1754 -1.4802 23 6 11.1015 -5.8346 -0.8006 24 6 5.6558 -1.3392 1.1418 25 6 4.1326 -1.2752 1.2744 26 1 -0.4851 0.8400 -0.0004 27 1 3.8347 -0.2833 -0.6165 28 1 3.5436 -2.3397 -1.9483 29 1 3.5897 -3.3237 -0.4653 30 1 5.8402 -1.5369 -1.4963 31 1 5.8003 -3.3144 -1.5790 32 1 7.8837 -2.6322 1.3338 33 1 7.9343 -1.9014 -0.2884 34 1 7.5141 -5.1007 1.4197 35 1 9.7139 -4.2823 0.7348 36 1 9.8164 -3.4078 -0.8121 37 1 9.9265 -4.6397 -2.8816 38 1 8.2765 -5.1997 -2.5142 39 1 9.4473 -6.7008 -4.1392 40 1 9.0178 -7.5439 -2.6310 41 1 10.8138 -7.9620 -0.9947 42 1 12.4545 -7.4024 -1.4002 43 1 11.3274 -5.9093 0.2632 44 1 11.7191 -5.0573 -1.2507 45 1 6.1039 -1.4094 2.1331 46 1 6.0153 -0.4387 0.6440 47 1 3.8540 -0.3914 1.8483 48 1 3.7737 -2.1691 1.7846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397357834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:50 Heat of formation + Delta-G solvation = -88.776617 kcal Electronic energy + Delta-G solvation = -25320.695977 eV Core-core repulsion = 21796.330027 eV Total energy + Delta-G solvation = -3524.365950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01552 -38.82867 -37.23610 -35.38280 -33.76122 -31.79569 -31.53399 -30.32585 -30.03221 -27.71423 -25.76401 -24.41725 -23.65575 -22.65126 -21.51954 -20.80614 -20.67122 -18.74285 -17.17052 -16.82045 -16.57815 -16.11808 -15.97056 -15.43194 -15.33324 -15.28009 -14.86154 -14.26883 -14.17553 -14.00892 -13.70780 -13.16109 -12.99295 -12.78391 -12.58479 -12.44711 -12.30333 -11.76737 -11.68902 -11.64645 -11.47535 -11.36578 -10.95009 -10.90832 -10.78699 -10.57373 -10.30388 -10.14715 -9.80216 -9.75094 -9.52223 -9.13048 -8.90461 -8.67674 -8.46973 -7.89739 -6.03872 -4.01068 3.28045 3.30203 3.37372 3.39952 3.55283 4.10686 4.42352 4.44610 4.56959 4.62820 4.63589 4.81105 4.87956 4.88667 5.03182 5.10074 5.19253 5.21650 5.25766 5.30948 5.32313 5.42903 5.49629 5.56367 5.60878 5.64216 5.71912 5.85693 5.93644 5.96844 6.19086 6.24598 6.44842 6.53529 6.57905 6.60282 6.79801 6.80855 6.94437 7.01601 7.36399 7.41639 7.57364 7.63676 7.83036 7.84959 8.59332 9.03382 9.60383 11.09972 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.034362 B = 0.002839 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.655547 B = 9859.467785 C =10118.135917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.506 4.506 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.098 4.098 11 C 0.056 3.944 12 N -0.521 5.521 13 C 0.022 3.978 14 C 0.118 3.882 15 H 0.097 0.903 16 O -0.531 6.531 17 C 0.023 3.977 18 N -0.525 5.525 19 C 0.014 3.986 20 C 0.064 3.936 21 O -0.388 6.388 22 C 0.064 3.936 23 C 0.017 3.983 24 C 0.056 3.944 25 C -0.108 4.108 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.367 0.633 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.040 0.960 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.053 0.947 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.291 -10.031 -1.453 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.544 4.544 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.136 4.136 11 C -0.072 4.072 12 N -0.245 5.245 13 C -0.107 4.107 14 C 0.057 3.943 15 H 0.114 0.886 16 O -0.334 6.334 17 C -0.105 4.105 18 N -0.250 5.250 19 C -0.114 4.114 20 C -0.013 4.013 21 O -0.307 6.307 22 C -0.013 4.013 23 C -0.111 4.111 24 C -0.072 4.072 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.213 0.787 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 23.467 -10.856 -1.734 25.914 hybrid contribution 1.380 2.769 0.047 3.094 sum 24.847 -8.087 -1.687 26.184 Atomic orbital electron populations 1.69919 1.06298 1.26743 1.51206 1.25073 0.94650 0.98912 0.94668 0.86890 0.80600 0.84014 0.78216 1.20684 1.21604 1.18721 1.21037 0.89207 0.94466 1.49647 0.90924 1.19171 0.96363 0.93528 0.91336 1.21582 0.90975 1.00686 1.00377 1.22244 0.97936 0.98618 0.88396 1.61840 1.07829 1.40377 1.14467 1.22768 0.90501 0.96630 1.00844 1.21870 0.89363 0.86690 0.96355 0.88569 1.86649 1.69195 1.52833 1.24733 1.22893 0.97892 0.90209 0.99540 1.62108 1.18153 1.33233 1.11506 1.22863 1.02392 0.98071 0.88052 1.22673 0.82688 0.95251 1.00673 1.87976 1.26854 1.91019 1.24821 1.22648 1.00722 0.95924 0.82007 1.22798 0.88736 0.97926 1.01634 1.22243 0.99182 0.89612 0.96160 1.21896 0.90577 1.01236 1.00897 0.92820 0.95826 0.92455 0.91845 0.96119 0.91922 0.90909 0.94921 0.78656 0.90213 0.94097 0.94137 0.89045 0.88380 0.91895 0.92084 0.88580 0.89658 0.94194 0.92249 0.96143 0.92788 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.59 26.61 -169.99 -4.52 17.07 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.14 6.09 56.52 0.34 -5.79 16 7 C -0.51 -14.19 8.87 -34.44 -0.31 -14.49 16 8 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 9 C 0.02 0.35 1.70 -91.64 -0.16 0.20 16 10 C -0.10 -2.02 5.36 -26.65 -0.14 -2.16 16 11 C 0.06 0.94 5.29 -3.84 -0.02 0.92 16 12 N -0.52 -8.34 4.50 -234.67 -1.06 -9.40 16 13 C 0.02 0.27 4.63 -3.82 -0.02 0.25 16 14 C 0.12 1.30 2.79 -26.73 -0.07 1.23 16 15 H 0.10 1.18 4.65 -51.93 -0.24 0.93 16 16 O -0.53 -6.75 13.13 -35.23 -0.46 -7.21 16 17 C 0.02 0.21 4.59 -3.83 -0.02 0.19 16 18 N -0.53 -4.95 4.67 -234.31 -1.09 -6.05 16 19 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 20 C 0.06 0.57 7.01 37.21 0.26 0.83 16 21 O -0.39 -3.92 10.83 -35.23 -0.38 -4.30 16 22 C 0.06 0.50 7.01 37.21 0.26 0.76 16 23 C 0.02 0.14 5.65 -3.72 -0.02 0.12 16 24 C 0.06 0.96 5.46 -3.84 -0.02 0.94 16 25 C -0.11 -2.27 5.17 -26.65 -0.14 -2.41 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.56 5.60 -51.93 -0.29 0.27 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.97 6.25 -51.93 -0.32 0.64 16 32 H 0.07 0.78 7.98 -51.93 -0.41 0.37 16 33 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.37 3.57 9.05 45.56 0.41 3.98 16 35 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 36 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.88 6.29 -51.93 -0.33 0.55 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.04 0.33 8.14 -51.92 -0.42 -0.10 16 45 H 0.06 0.91 8.01 -51.92 -0.42 0.49 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 1.17 7.13 -51.93 -0.37 0.80 16 48 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -32.06 361.70 -9.72 -41.78 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.92 Total: 1.34 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.51 Total: -11.65 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -1.38 Total: -42.47 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.84 Total: -11.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.52 Total: 17.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.06 -9.72 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397357834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.994 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds