Wall clock time and date at job start Tue Mar 31 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48504 * 109.46703 * 274.27872 * 3 2 1 5 5 H 1.48499 * 109.47303 * 34.27188 * 3 2 1 6 6 H 1.48493 * 109.47310 * 154.27947 * 3 2 1 7 7 C 1.37873 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00605 * 354.66902 * 7 2 1 9 9 C 1.50710 * 119.99981 * 174.66499 * 7 2 1 10 10 C 1.53118 * 109.52367 * 215.44546 * 9 7 2 11 11 C 1.53036 * 109.27688 * 182.44056 * 10 9 7 12 12 N 1.46845 * 109.52497 * 59.17444 * 11 10 9 13 13 C 1.46901 * 111.00114 * 174.15901 * 12 11 10 14 14 C 1.53003 * 109.47301 * 293.81529 * 13 12 11 15 15 H 1.09005 * 109.46924 * 61.13583 * 14 13 12 16 16 O 1.42898 * 109.46781 * 301.13997 * 14 13 12 17 17 C 1.52990 * 109.47007 * 181.13735 * 14 13 12 18 18 N 1.46906 * 109.47225 * 184.99918 * 17 14 13 19 19 C 1.47018 * 110.99465 * 66.31707 * 18 17 14 20 20 C 1.53099 * 109.25283 * 182.35313 * 19 18 17 21 21 O 1.43012 * 109.29438 * 303.21853 * 20 19 18 22 22 C 1.43019 * 113.73930 * 58.64920 * 21 20 19 23 23 C 1.47008 * 111.00428 * 190.00113 * 18 17 14 24 24 C 1.46842 * 111.19818 * 298.26004 * 12 11 10 25 25 C 1.53035 * 109.52605 * 61.74447 * 24 12 11 26 26 H 0.96999 * 120.00422 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.56994 * 335.60440 * 9 7 2 28 28 H 1.08994 * 109.50551 * 62.49669 * 10 9 7 29 29 H 1.09007 * 109.53110 * 302.39948 * 10 9 7 30 30 H 1.09006 * 109.45922 * 299.15738 * 11 10 9 31 31 H 1.09001 * 109.45641 * 179.19015 * 11 10 9 32 32 H 1.08999 * 109.47194 * 173.81289 * 13 12 11 33 33 H 1.08999 * 109.46902 * 53.81557 * 13 12 11 34 34 H 0.96704 * 114.00044 * 299.99220 * 16 14 13 35 35 H 1.08998 * 109.47417 * 64.99940 * 17 14 13 36 36 H 1.09001 * 109.47663 * 304.99776 * 17 14 13 37 37 H 1.09003 * 109.47458 * 62.44338 * 19 18 17 38 38 H 1.09000 * 109.54906 * 302.31208 * 19 18 17 39 39 H 1.09007 * 109.50469 * 183.26257 * 20 19 18 40 40 H 1.09002 * 109.50684 * 63.17629 * 20 19 18 41 41 H 1.09002 * 109.50519 * 61.26442 * 22 21 20 42 42 H 1.08999 * 109.50996 * 181.35043 * 22 21 20 43 43 H 1.09004 * 109.50709 * 57.66955 * 23 18 17 44 44 H 1.09009 * 109.50517 * 297.54327 * 23 18 17 45 45 H 1.09012 * 109.46204 * 181.75562 * 24 12 11 46 46 H 1.08997 * 109.46288 * 301.72021 * 24 12 11 47 47 H 1.09003 * 109.50464 * 180.87917 * 25 24 12 48 48 H 1.09003 * 109.50699 * 60.75707 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4061 2.0986 -1.3962 5 1 1.4946 2.6249 0.7884 6 1 3.5889 1.4158 0.6076 7 6 2.0045 -1.1940 0.0005 8 1 1.4680 -2.1274 0.0878 9 6 3.5067 -1.1970 -0.1208 10 6 3.9515 -2.4116 -0.9401 11 6 5.4800 -2.4427 -1.0084 12 7 6.0305 -2.5183 0.3509 13 6 7.4892 -2.6892 0.3194 14 6 7.8300 -4.0531 -0.2845 15 1 7.4530 -4.1026 -1.3061 16 8 7.2243 -5.0848 0.4972 17 6 9.3480 -4.2429 -0.2912 18 7 9.6816 -5.4977 -0.9785 19 6 9.3376 -5.4241 -2.4059 20 6 9.6462 -6.7687 -3.0696 21 8 11.0228 -7.0944 -2.8597 22 6 11.3914 -7.1754 -1.4802 23 6 11.1015 -5.8346 -0.8006 24 6 5.6558 -1.3392 1.1418 25 6 4.1326 -1.2752 1.2744 26 1 -0.4851 0.8400 -0.0004 27 1 3.8347 -0.2833 -0.6165 28 1 3.5436 -2.3397 -1.9483 29 1 3.5897 -3.3237 -0.4653 30 1 5.8402 -1.5369 -1.4963 31 1 5.8003 -3.3144 -1.5790 32 1 7.8837 -2.6322 1.3338 33 1 7.9343 -1.9014 -0.2884 34 1 7.5141 -5.1007 1.4197 35 1 9.7139 -4.2823 0.7348 36 1 9.8164 -3.4078 -0.8121 37 1 9.9265 -4.6397 -2.8816 38 1 8.2765 -5.1997 -2.5142 39 1 9.4473 -6.7008 -4.1392 40 1 9.0178 -7.5439 -2.6310 41 1 10.8138 -7.9620 -0.9947 42 1 12.4545 -7.4024 -1.4002 43 1 11.3274 -5.9093 0.2632 44 1 11.7191 -5.0573 -1.2507 45 1 6.1039 -1.4094 2.1331 46 1 6.0153 -0.4387 0.6440 47 1 3.8540 -0.3914 1.8483 48 1 3.7737 -2.1691 1.7846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397357834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:49 Heat of formation + Delta-G solvation = -115.260660 kcal Electronic energy + Delta-G solvation = -25321.844411 eV Core-core repulsion = 21796.330027 eV Total energy + Delta-G solvation = -3525.514384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75114 -40.01600 -38.28300 -36.20313 -35.41859 -33.65532 -32.18559 -31.68550 -31.15769 -28.85094 -27.17114 -25.11753 -24.82223 -24.02216 -22.92659 -21.88901 -21.34186 -20.41941 -18.97079 -17.96848 -17.30921 -16.96870 -16.81419 -16.67314 -16.18483 -16.02059 -15.95533 -15.70272 -15.36401 -14.92676 -14.90460 -14.74317 -14.45274 -14.29618 -13.92015 -13.40546 -13.11452 -13.03885 -12.90799 -12.85215 -12.67620 -12.44378 -12.30150 -12.24023 -11.99808 -11.76319 -11.68468 -11.53389 -11.26378 -11.02537 -10.98601 -10.74921 -10.60116 -10.49946 -9.34479 -9.11632 -8.27782 -6.29997 1.32552 1.35079 1.47447 2.35602 2.59107 2.91943 3.06846 3.07959 3.68347 3.79096 3.90753 3.99348 4.06285 4.09869 4.14668 4.19308 4.25772 4.31441 4.34729 4.38675 4.44723 4.51296 4.60842 4.65336 4.70379 4.72327 4.73416 4.75428 4.80254 4.84547 4.89972 4.96407 4.99987 5.01305 5.16035 5.27510 5.33534 5.61459 5.70485 5.77391 5.91517 5.96583 6.16789 6.22386 6.29742 6.37454 6.77112 7.09282 7.34845 8.90036 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.034362 B = 0.002839 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.655547 B = 9859.467785 C =10118.135917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.005 3.995 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.511 4.511 8 H 0.025 0.975 9 C 0.014 3.986 10 C -0.095 4.095 11 C 0.066 3.934 12 N -0.534 5.534 13 C 0.025 3.975 14 C 0.124 3.876 15 H 0.082 0.918 16 O -0.554 6.554 17 C 0.032 3.968 18 N -0.538 5.538 19 C 0.016 3.984 20 C 0.063 3.937 21 O -0.406 6.406 22 C 0.059 3.941 23 C 0.019 3.981 24 C 0.064 3.936 25 C -0.105 4.105 26 H 0.264 0.736 27 H 0.025 0.975 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.380 0.620 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.039 0.961 45 H 0.087 0.913 46 H 0.026 0.974 47 H 0.045 0.955 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.995 -9.209 -1.006 29.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.549 4.549 8 H 0.043 0.957 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.062 4.062 12 N -0.258 5.258 13 C -0.103 4.103 14 C 0.063 3.937 15 H 0.100 0.900 16 O -0.359 6.359 17 C -0.097 4.097 18 N -0.264 5.264 19 C -0.112 4.112 20 C -0.013 4.013 21 O -0.325 6.325 22 C -0.017 4.017 23 C -0.108 4.108 24 C -0.064 4.064 25 C -0.143 4.143 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.228 0.772 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.134 0.866 43 H 0.120 0.880 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.044 0.956 47 H 0.064 0.936 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 27.207 -10.055 -1.277 29.033 hybrid contribution 0.157 2.365 -0.083 2.372 sum 27.364 -7.690 -1.360 28.456 Atomic orbital electron populations 1.70084 1.08378 1.27918 1.53176 1.26008 0.95471 1.03198 0.94400 0.85778 0.80115 0.78566 0.78720 1.19824 1.21411 1.16080 1.21335 0.92027 0.92687 1.48894 0.95695 1.19159 0.93156 0.94740 0.93490 1.21458 0.94274 0.98456 0.99159 1.22062 0.94719 0.99789 0.89602 1.61763 1.10703 1.39810 1.13551 1.22842 0.87624 0.97342 1.02512 1.21787 0.90726 0.85830 0.95309 0.90000 1.86620 1.69938 1.53457 1.25899 1.22783 0.96112 0.90226 1.00550 1.62104 1.19238 1.33612 1.11404 1.22821 1.01939 0.98120 0.88346 1.22719 0.82288 0.94906 1.01429 1.87951 1.27252 1.91108 1.26206 1.22820 1.01868 0.95987 0.81036 1.22832 0.87733 0.97664 1.02604 1.22098 0.95837 0.90400 0.98028 1.21720 0.93893 1.00127 0.98572 0.92697 0.95672 0.93186 0.93792 0.95343 0.90297 0.88794 0.93859 0.77242 0.88525 0.93526 0.94232 0.89697 0.87213 0.92562 0.92393 0.86643 0.88038 0.94300 0.89513 0.95605 0.93590 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.92 13.96 21.45 0.30 -60.63 16 2 C 0.01 0.31 5.47 84.65 0.46 0.77 16 3 Si 0.94 44.47 26.61 68.60 1.83 46.29 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.24 -10.14 6.09 99.48 0.61 -9.53 16 7 C -0.51 -29.78 8.87 25.60 0.23 -29.56 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 9 C 0.01 0.63 1.70 -11.46 -0.02 0.61 16 10 C -0.10 -3.93 5.36 30.65 0.16 -3.76 16 11 C 0.07 2.11 5.29 86.33 0.46 2.56 16 12 N -0.53 -15.55 4.50 -896.36 -4.03 -19.59 16 13 C 0.03 0.51 4.63 86.30 0.40 0.91 16 14 C 0.12 2.38 2.79 30.59 0.09 2.47 16 15 H 0.08 1.82 4.65 -2.38 -0.01 1.81 16 16 O -0.55 -12.83 13.13 -148.98 -1.96 -14.79 16 17 C 0.03 0.46 4.59 86.30 0.40 0.86 16 18 N -0.54 -8.89 4.67 -895.21 -4.18 -13.07 16 19 C 0.02 0.27 5.44 86.31 0.47 0.74 16 20 C 0.06 1.06 7.01 72.02 0.50 1.56 16 21 O -0.41 -7.64 10.83 -148.98 -1.61 -9.25 16 22 C 0.06 0.82 7.01 72.01 0.50 1.32 16 23 C 0.02 0.26 5.65 86.31 0.49 0.74 16 24 C 0.06 2.00 5.46 86.33 0.47 2.47 16 25 C -0.10 -4.29 5.17 30.65 0.16 -4.13 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.03 1.16 5.60 -2.39 -0.01 1.15 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 2.28 6.25 -2.39 -0.01 2.26 16 32 H 0.09 1.55 7.98 -2.39 -0.02 1.53 16 33 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.38 6.35 9.05 -74.05 -0.67 5.68 16 35 H 0.10 1.09 8.04 -2.39 -0.02 1.07 16 36 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 37 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 1.54 6.29 -2.39 -0.02 1.53 16 39 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.00 8.09 -2.38 -0.02 0.98 16 44 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.09 2.27 8.01 -2.38 -0.02 2.25 16 46 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 1.92 7.13 -2.39 -0.02 1.91 16 48 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.37 361.70 -4.74 -76.11 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.16 Total: 17.35 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.77 Total: -22.43 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -7.92 Total: -93.29 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -3.57 Total: -24.04 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.83 Total: 46.29 kcal Total: -71.37 -4.74 -76.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397357834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.153 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds