Wall clock time and date at job start Tue Mar 31 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.50135 * 2 1 4 4 C 1.53120 * 109.53420 * 239.90437 * 2 1 3 5 5 C 1.53120 * 109.16234 * 182.38360 * 4 2 1 6 6 H 1.08996 * 109.50268 * 297.67388 * 5 4 2 7 7 C 1.52995 * 109.50406 * 177.59786 * 5 4 2 8 8 O 1.42896 * 109.47511 * 175.00160 * 7 5 4 9 9 C 1.53031 * 109.27618 * 57.65383 * 5 4 2 10 10 N 1.46847 * 109.52676 * 300.82038 * 9 5 4 11 11 C 1.46894 * 111.00204 * 185.83724 * 10 9 5 12 12 C 1.52997 * 109.47515 * 301.83855 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 15 13 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00061 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.47453 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00240 * 22 20 18 26 26 C 1.46848 * 111.19674 * 61.74351 * 10 9 5 27 27 H 1.09000 * 109.46432 * 299.91718 * 1 2 3 28 28 H 1.08998 * 109.47205 * 59.91615 * 1 2 3 29 29 H 1.09000 * 109.46942 * 179.91655 * 1 2 3 30 30 H 1.09005 * 109.52294 * 302.29282 * 4 2 1 31 31 H 1.09001 * 109.52138 * 62.47554 * 4 2 1 32 32 H 1.09006 * 109.47057 * 294.99743 * 7 5 4 33 33 H 1.09003 * 109.47522 * 54.99545 * 7 5 4 34 34 H 0.96700 * 114.00760 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46364 * 180.80696 * 9 5 4 36 36 H 1.09001 * 109.46118 * 60.83999 * 9 5 4 37 37 H 1.09002 * 109.47104 * 181.83587 * 11 10 9 38 38 H 1.08998 * 109.46828 * 61.84419 * 11 10 9 39 39 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 40 40 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 41 41 H 1.08995 * 109.47620 * 89.99771 * 16 15 13 42 42 H 1.09006 * 109.47028 * 209.99878 * 16 15 13 43 43 H 1.09002 * 109.47109 * 329.99455 * 16 15 13 44 44 H 1.09000 * 109.47018 * 209.99971 * 17 15 13 45 45 H 1.09000 * 109.47828 * 330.00266 * 17 15 13 46 46 H 0.96997 * 120.00410 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.46232 * 58.27111 * 26 10 9 48 48 H 1.08996 * 109.46746 * 178.25900 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0421 -0.7236 -1.2485 5 6 3.5720 -0.7709 -1.2101 6 1 3.9681 0.2444 -1.2299 7 6 4.0898 -1.5448 -2.4241 8 8 5.5175 -1.4895 -2.4509 9 6 4.0238 -1.4716 0.0732 10 7 3.5094 -0.7409 1.2385 11 6 4.0373 -1.3043 2.4882 12 6 3.6559 -2.7830 2.5822 13 6 4.1980 -3.3611 3.8640 14 8 4.8270 -2.6593 4.6274 15 7 3.9829 -4.6577 4.1624 16 6 3.2227 -5.5052 3.2406 17 6 4.5095 -5.2195 5.4088 18 6 3.4865 -5.0589 6.5038 19 1 2.5392 -4.5853 6.2925 20 6 3.7601 -5.5165 7.7753 21 7 2.8673 -5.3769 8.7307 22 14 5.3984 -6.3363 8.1405 23 1 6.3819 -5.3086 8.5672 24 1 5.2218 -7.3335 9.2266 25 1 5.8941 -7.0184 6.9181 26 6 2.0411 -0.7231 1.2482 27 1 -0.3632 0.5126 0.8908 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3633 -1.0277 -0.0015 30 1 1.6466 -1.7392 -1.2688 31 1 1.7164 -0.1871 -2.1397 32 1 3.7677 -2.5840 -2.3569 33 1 3.6918 -1.0993 -3.3359 34 1 5.9155 -1.9606 -3.1956 35 1 5.1129 -1.4942 0.1105 36 1 3.6389 -2.4913 0.0849 37 1 3.6151 -0.7655 3.3365 38 1 5.1229 -1.2075 2.5003 39 1 4.0781 -3.3218 1.7339 40 1 2.5703 -2.8797 2.5701 41 1 3.9044 -5.9709 2.5290 42 1 2.7016 -6.2790 3.8044 43 1 2.4962 -4.8962 2.7025 44 1 4.7266 -6.2782 5.2669 45 1 5.4239 -4.6950 5.6861 46 1 3.0596 -5.6991 9.6251 47 1 1.6655 -1.7463 1.2545 48 1 1.6900 -0.2018 2.1388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398678195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:06 Heat of formation + Delta-G solvation = -94.517370 kcal Electronic energy + Delta-G solvation = -25228.321770 eV Core-core repulsion = 21703.706882 eV Total energy + Delta-G solvation = -3524.614888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00427 -38.87916 -37.01790 -35.16860 -34.72300 -32.74144 -32.54287 -30.35616 -28.28335 -26.80291 -26.05433 -25.95240 -25.07601 -22.50237 -21.19375 -20.99218 -19.80859 -18.32797 -17.59907 -16.96231 -16.59269 -15.93507 -15.54613 -15.42504 -15.23614 -14.77143 -14.39894 -14.24769 -14.08408 -13.68213 -13.43179 -13.20963 -12.77241 -12.68669 -12.51848 -12.30671 -12.19386 -12.06948 -12.01288 -11.88301 -11.53838 -11.43199 -11.28014 -10.92772 -10.85222 -10.59865 -10.54770 -10.51475 -10.45205 -10.20458 -10.14181 -9.54432 -9.01785 -8.58824 -8.29839 -7.69915 -6.08650 -4.07464 3.29547 3.35320 3.35802 3.37478 3.72014 3.87006 3.98600 4.39904 4.54450 4.56711 4.72518 4.75327 4.98423 5.10906 5.12234 5.16640 5.22652 5.25056 5.26456 5.28376 5.35574 5.43287 5.45158 5.49411 5.57946 5.61158 5.64034 5.76683 5.81373 5.87009 5.91368 5.97099 6.05475 6.08234 6.13805 6.23348 6.33975 6.69471 6.94210 7.07159 7.09380 7.33310 7.34049 7.61290 8.25276 8.47241 8.92776 8.99670 9.51706 11.04807 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003203 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.805318 B = 8738.884262 C = 9378.005321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.085 4.085 6 H 0.085 0.915 7 C 0.081 3.919 8 O -0.571 6.571 9 C 0.061 3.939 10 N -0.535 5.535 11 C 0.073 3.927 12 C -0.176 4.176 13 C 0.510 3.490 14 O -0.540 6.540 15 N -0.600 5.600 16 C 0.085 3.915 17 C 0.215 3.785 18 C -0.529 4.529 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.053 3.947 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.037 0.963 46 H 0.265 0.735 47 H 0.036 0.964 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 6.449 -25.375 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.147 4.147 5 C -0.104 4.104 6 H 0.104 0.896 7 C 0.003 3.997 8 O -0.376 6.376 9 C -0.067 4.067 10 N -0.257 5.257 11 C -0.055 4.055 12 C -0.218 4.218 13 C 0.296 3.704 14 O -0.418 6.418 15 N -0.332 5.332 16 C -0.059 4.059 17 C 0.094 3.906 18 C -0.567 4.567 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.536 5.536 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.075 4.075 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.767 7.610 -24.248 25.475 hybrid contribution 0.361 -1.849 -0.133 1.888 sum -1.405 5.762 -24.381 25.092 Atomic orbital electron populations 1.21796 0.94834 1.01912 1.01901 1.21132 0.95116 1.00365 0.94008 0.90263 1.21632 0.94098 1.00782 0.98146 1.21177 0.95114 1.00858 0.93252 0.89613 1.22207 0.81028 0.98899 0.97561 1.86519 1.19797 1.78492 1.52769 1.22093 1.00735 0.94604 0.89273 1.62196 1.07759 1.53395 1.02373 1.21978 1.01445 0.90792 0.91261 1.22363 1.02481 0.99551 0.97369 1.20257 0.80787 0.82069 0.87289 1.90670 1.41302 1.58674 1.51127 1.47862 1.53655 1.09532 1.22132 1.21627 0.95347 0.95648 0.93258 1.19657 0.95882 0.93380 0.81656 1.21330 1.02793 1.39537 0.93068 0.90853 1.24864 0.96772 0.95507 0.95912 1.69895 1.34696 1.46907 1.02151 0.86834 0.84601 0.79740 0.78413 1.19846 1.21058 1.19100 1.22217 0.87746 0.99102 0.98397 0.92314 0.92570 0.92702 0.92015 0.91735 0.93772 0.93629 0.77581 0.89986 0.94801 0.89650 0.89758 0.89637 0.89501 0.93790 0.90598 0.92393 0.95331 0.94538 0.92554 0.94574 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.20 37.16 0.34 -0.75 16 2 C -0.09 -0.76 2.88 -90.54 -0.26 -1.02 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -0.85 4.57 -26.61 -0.12 -0.97 16 5 C -0.09 -0.78 2.59 -90.54 -0.23 -1.01 16 6 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 7 C 0.08 0.61 6.43 37.15 0.24 0.85 16 8 O -0.57 -4.92 13.22 -35.23 -0.47 -5.39 16 9 C 0.06 0.67 4.00 -3.84 -0.02 0.65 16 10 N -0.54 -6.55 4.86 -234.68 -1.14 -7.69 16 11 C 0.07 1.07 4.65 -3.83 -0.02 1.05 16 12 C -0.18 -2.61 3.55 -27.88 -0.10 -2.71 16 13 C 0.51 10.52 7.67 -10.98 -0.08 10.44 16 14 O -0.54 -13.44 15.56 5.56 0.09 -13.36 16 15 N -0.60 -12.60 2.86 -182.96 -0.52 -13.13 16 16 C 0.09 1.33 10.24 59.84 0.61 1.95 16 17 C 0.21 5.37 4.23 -5.19 -0.02 5.35 16 18 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 19 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 22 Si 0.88 21.85 27.47 -169.99 -4.67 17.19 16 23 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 26 C 0.05 0.58 4.33 -3.83 -0.02 0.56 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.38 1.54 9.12 45.56 0.42 1.96 16 35 H 0.08 1.02 7.83 -51.93 -0.41 0.61 16 36 H 0.03 0.37 6.61 -51.93 -0.34 0.02 16 37 H 0.09 1.37 8.02 -51.93 -0.42 0.95 16 38 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.09 1.11 6.47 -51.93 -0.34 0.78 16 40 H 0.09 1.20 5.94 -51.93 -0.31 0.89 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 44 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 45 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.04 0.39 6.75 -51.93 -0.35 0.04 16 48 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -35.17 371.63 -8.34 -43.51 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.88 Total: -0.12 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.12 Total: 0.61 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.89 Total: -48.03 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.38 Total: -18.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.17 -8.34 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398678195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.011 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds