Wall clock time and date at job start Tue Mar 31 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.50135 * 2 1 4 4 C 1.53120 * 109.53420 * 239.90437 * 2 1 3 5 5 C 1.53120 * 109.16234 * 182.38360 * 4 2 1 6 6 H 1.08996 * 109.50268 * 297.67388 * 5 4 2 7 7 C 1.52995 * 109.50406 * 177.59786 * 5 4 2 8 8 O 1.42896 * 109.47511 * 175.00160 * 7 5 4 9 9 C 1.53031 * 109.27618 * 57.65383 * 5 4 2 10 10 N 1.46847 * 109.52676 * 300.82038 * 9 5 4 11 11 C 1.46894 * 111.00204 * 185.83724 * 10 9 5 12 12 C 1.52997 * 109.47515 * 301.83855 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 15 13 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00061 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.47453 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00240 * 22 20 18 26 26 C 1.46848 * 111.19674 * 61.74351 * 10 9 5 27 27 H 1.09000 * 109.46432 * 299.91718 * 1 2 3 28 28 H 1.08998 * 109.47205 * 59.91615 * 1 2 3 29 29 H 1.09000 * 109.46942 * 179.91655 * 1 2 3 30 30 H 1.09005 * 109.52294 * 302.29282 * 4 2 1 31 31 H 1.09001 * 109.52138 * 62.47554 * 4 2 1 32 32 H 1.09006 * 109.47057 * 294.99743 * 7 5 4 33 33 H 1.09003 * 109.47522 * 54.99545 * 7 5 4 34 34 H 0.96700 * 114.00760 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46364 * 180.80696 * 9 5 4 36 36 H 1.09001 * 109.46118 * 60.83999 * 9 5 4 37 37 H 1.09002 * 109.47104 * 181.83587 * 11 10 9 38 38 H 1.08998 * 109.46828 * 61.84419 * 11 10 9 39 39 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 40 40 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 41 41 H 1.08995 * 109.47620 * 89.99771 * 16 15 13 42 42 H 1.09006 * 109.47028 * 209.99878 * 16 15 13 43 43 H 1.09002 * 109.47109 * 329.99455 * 16 15 13 44 44 H 1.09000 * 109.47018 * 209.99971 * 17 15 13 45 45 H 1.09000 * 109.47828 * 330.00266 * 17 15 13 46 46 H 0.96997 * 120.00410 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.46232 * 58.27111 * 26 10 9 48 48 H 1.08996 * 109.46746 * 178.25900 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0421 -0.7236 -1.2485 5 6 3.5720 -0.7709 -1.2101 6 1 3.9681 0.2444 -1.2299 7 6 4.0898 -1.5448 -2.4241 8 8 5.5175 -1.4895 -2.4509 9 6 4.0238 -1.4716 0.0732 10 7 3.5094 -0.7409 1.2385 11 6 4.0373 -1.3043 2.4882 12 6 3.6559 -2.7830 2.5822 13 6 4.1980 -3.3611 3.8640 14 8 4.8270 -2.6593 4.6274 15 7 3.9829 -4.6577 4.1624 16 6 3.2227 -5.5052 3.2406 17 6 4.5095 -5.2195 5.4088 18 6 3.4865 -5.0589 6.5038 19 1 2.5392 -4.5853 6.2925 20 6 3.7601 -5.5165 7.7753 21 7 2.8673 -5.3769 8.7307 22 14 5.3984 -6.3363 8.1405 23 1 6.3819 -5.3086 8.5672 24 1 5.2218 -7.3335 9.2266 25 1 5.8941 -7.0184 6.9181 26 6 2.0411 -0.7231 1.2482 27 1 -0.3632 0.5126 0.8908 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3633 -1.0277 -0.0015 30 1 1.6466 -1.7392 -1.2688 31 1 1.7164 -0.1871 -2.1397 32 1 3.7677 -2.5840 -2.3569 33 1 3.6918 -1.0993 -3.3359 34 1 5.9155 -1.9606 -3.1956 35 1 5.1129 -1.4942 0.1105 36 1 3.6389 -2.4913 0.0849 37 1 3.6151 -0.7655 3.3365 38 1 5.1229 -1.2075 2.5003 39 1 4.0781 -3.3218 1.7339 40 1 2.5703 -2.8797 2.5701 41 1 3.9044 -5.9709 2.5290 42 1 2.7016 -6.2790 3.8044 43 1 2.4962 -4.8962 2.7025 44 1 4.7266 -6.2782 5.2669 45 1 5.4239 -4.6950 5.6861 46 1 3.0596 -5.6991 9.6251 47 1 1.6655 -1.7463 1.2545 48 1 1.6900 -0.2018 2.1388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398678195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:05 Heat of formation + Delta-G solvation = -122.088463 kcal Electronic energy + Delta-G solvation = -25229.517342 eV Core-core repulsion = 21703.706882 eV Total energy + Delta-G solvation = -3525.810460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.13403 -40.21031 -37.68866 -36.72040 -35.82961 -34.72021 -33.43923 -31.76597 -30.02665 -27.53638 -27.42338 -26.61688 -26.34157 -24.26704 -22.30089 -21.69442 -20.76862 -19.79001 -19.17676 -18.20745 -18.00526 -17.16811 -16.95120 -16.49915 -16.41579 -16.02570 -15.61353 -15.30580 -15.06014 -14.75830 -14.49809 -14.39751 -14.27330 -13.83745 -13.68272 -13.65015 -13.47953 -13.35653 -13.19404 -12.93099 -12.77751 -12.76526 -12.44099 -12.27750 -12.08271 -12.04235 -11.77327 -11.63073 -11.52949 -11.28945 -11.16441 -10.85777 -10.78777 -10.71129 -9.43318 -9.28211 -8.36569 -6.42097 1.30962 1.35548 1.43808 1.74712 2.28398 2.29689 2.88511 2.97847 3.35123 3.74732 3.78703 3.83200 3.95612 4.03159 4.08224 4.09862 4.27993 4.33709 4.45171 4.49504 4.55561 4.61550 4.65681 4.70599 4.74900 4.76712 4.78695 4.83006 4.85749 4.92294 4.92709 4.94309 5.02804 5.10098 5.11646 5.26469 5.33713 5.40463 5.43040 5.55261 5.58030 6.05837 6.17514 6.20751 6.58868 6.65378 6.98314 7.18516 7.38019 8.80490 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003203 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.805318 B = 8738.884262 C = 9378.005321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.069 0.931 4 C -0.103 4.103 5 C -0.083 4.083 6 H 0.067 0.933 7 C 0.083 3.917 8 O -0.596 6.596 9 C 0.061 3.939 10 N -0.540 5.540 11 C 0.081 3.919 12 C -0.154 4.154 13 C 0.498 3.502 14 O -0.594 6.594 15 N -0.609 5.609 16 C 0.078 3.922 17 C 0.222 3.778 18 C -0.538 4.538 19 H 0.027 0.973 20 C 0.010 3.990 21 N -0.945 5.945 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.273 1.273 25 H -0.238 1.238 26 C 0.050 3.950 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.269 0.731 47 H 0.042 0.958 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 5.058 -28.424 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.140 4.140 5 C -0.102 4.102 6 H 0.086 0.914 7 C 0.005 3.995 8 O -0.404 6.404 9 C -0.066 4.066 10 N -0.262 5.262 11 C -0.048 4.048 12 C -0.196 4.196 13 C 0.287 3.713 14 O -0.475 6.475 15 N -0.340 5.340 16 C -0.064 4.064 17 C 0.100 3.900 18 C -0.577 4.577 19 H 0.046 0.954 20 C -0.188 4.188 21 N -0.585 5.585 22 Si 0.772 3.228 23 H -0.202 1.202 24 H -0.198 1.198 25 H -0.161 1.161 26 C -0.077 4.077 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.640 6.193 -27.370 28.110 hybrid contribution 0.238 -1.343 0.796 1.579 sum -1.402 4.851 -26.574 27.050 Atomic orbital electron populations 1.21766 0.93625 1.02313 1.02355 1.21105 0.96018 0.99662 0.93488 0.91206 1.21604 0.92885 1.01423 0.98123 1.21163 0.96150 0.99895 0.93008 0.91415 1.22223 0.80626 0.99390 0.97284 1.86473 1.20579 1.79156 1.54197 1.22121 0.99743 0.95229 0.89537 1.62194 1.08838 1.53462 1.01698 1.21762 1.00441 0.90657 0.91911 1.22273 1.03122 0.99321 0.94860 1.21263 0.79849 0.81608 0.88558 1.90637 1.43708 1.59928 1.53268 1.48006 1.53949 1.10452 1.21598 1.21946 0.96251 0.95337 0.92831 1.19339 0.93860 0.94410 0.82394 1.21561 1.02121 1.39015 0.94996 0.95450 1.25876 1.01136 0.96224 0.95536 1.70045 1.37265 1.48364 1.02849 0.85690 0.78829 0.78742 0.79530 1.20226 1.19813 1.16084 1.22302 0.86641 0.99572 0.99221 0.92885 0.91168 0.92286 0.91020 0.89948 0.92587 0.91804 0.75472 0.91719 0.93816 0.91988 0.91333 0.86740 0.87846 0.90224 0.91480 0.89591 0.93129 0.96422 0.92196 0.94030 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.20 71.98 0.66 -1.15 16 2 C -0.08 -1.31 2.88 -10.74 -0.03 -1.34 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.10 -1.30 4.57 30.67 0.14 -1.16 16 5 C -0.08 -1.34 2.59 -10.74 -0.03 -1.37 16 6 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 7 C 0.08 1.01 6.43 71.98 0.46 1.47 16 8 O -0.60 -9.08 13.22 -148.98 -1.97 -11.05 16 9 C 0.06 1.25 4.00 86.32 0.35 1.60 16 10 N -0.54 -12.94 4.86 -896.41 -4.35 -17.29 16 11 C 0.08 2.41 4.65 86.30 0.40 2.81 16 12 C -0.15 -4.39 3.55 29.85 0.11 -4.28 16 13 C 0.50 20.63 7.67 87.66 0.67 21.31 16 14 O -0.59 -30.67 15.56 -3.03 -0.05 -30.71 16 15 N -0.61 -25.13 2.86 -851.14 -2.43 -27.56 16 16 C 0.08 2.24 10.24 127.77 1.31 3.55 16 17 C 0.22 11.07 4.23 85.64 0.36 11.43 16 18 C -0.54 -32.32 9.94 25.60 0.25 -32.07 16 19 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 20 C 0.01 0.62 5.47 84.65 0.46 1.08 16 21 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 22 Si 0.95 45.08 27.47 68.60 1.88 46.96 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 26 C 0.05 1.03 4.33 86.33 0.37 1.41 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.79 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.40 2.37 9.12 -74.06 -0.68 1.70 16 35 H 0.06 1.55 7.83 -2.39 -0.02 1.54 16 36 H 0.04 0.80 6.61 -2.39 -0.02 0.79 16 37 H 0.06 2.10 8.02 -2.39 -0.02 2.08 16 38 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 39 H 0.11 2.63 6.47 -2.39 -0.02 2.61 16 40 H 0.10 2.64 5.94 -2.39 -0.01 2.62 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.05 8.07 -2.38 -0.02 2.03 16 43 H 0.09 1.96 6.44 -2.39 -0.02 1.94 16 44 H 0.05 2.29 7.13 -2.39 -0.02 2.28 16 45 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 46 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 47 H 0.04 0.81 6.75 -2.39 -0.02 0.79 16 48 H 0.06 1.47 8.06 -2.39 -0.02 1.45 16 Total: -1.00 -80.36 371.63 -0.93 -81.29 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.20 Total: 15.33 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 5.49 Total: 3.27 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -6.49 Total: -105.08 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -2.02 Total: -41.77 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -80.36 -0.93 -81.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398678195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.799 kcal (2) G-P(sol) polarization free energy of solvation -80.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds