Wall clock time and date at job start Tue Mar 31 2020 03:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.52759 * 2 1 4 4 C 1.53099 * 109.50722 * 120.07772 * 2 1 3 5 5 C 1.53126 * 109.15071 * 62.29362 * 4 2 1 6 6 H 1.08996 * 109.53423 * 297.69425 * 5 4 2 7 7 C 1.52992 * 109.49999 * 177.59266 * 5 4 2 8 8 O 1.42906 * 109.47126 * 175.19833 * 7 5 4 9 9 C 1.53039 * 109.28009 * 57.65227 * 5 4 2 10 10 N 1.46854 * 109.52227 * 300.82107 * 9 5 4 11 11 C 1.46898 * 110.99958 * 185.83752 * 10 9 5 12 12 C 1.52999 * 109.47401 * 169.74228 * 11 10 9 13 13 C 1.50694 * 109.47431 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99861 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00231 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99824 * 359.97438 * 15 13 12 17 17 C 1.46501 * 120.00120 * 179.97438 * 15 13 12 18 18 C 1.50698 * 109.46928 * 90.00239 * 17 15 13 19 19 H 1.08004 * 120.00009 * 359.97438 * 18 17 15 20 20 C 1.37881 * 120.00098 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00017 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99802 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47378 * 89.99858 * 22 20 18 24 24 H 1.48500 * 109.47184 * 210.00337 * 22 20 18 25 25 H 1.48504 * 109.47206 * 329.99990 * 22 20 18 26 26 C 1.46847 * 111.19790 * 61.74204 * 10 9 5 27 27 H 1.09001 * 109.46793 * 180.09926 * 1 2 3 28 28 H 1.09001 * 109.47310 * 300.09628 * 1 2 3 29 29 H 1.08996 * 109.47225 * 60.10225 * 1 2 3 30 30 H 1.08990 * 109.52931 * 302.39110 * 4 2 1 31 31 H 1.09002 * 109.57693 * 182.22641 * 4 2 1 32 32 H 1.09004 * 109.47667 * 295.19405 * 7 5 4 33 33 H 1.08998 * 109.47349 * 55.19710 * 7 5 4 34 34 H 0.96693 * 113.99905 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.46667 * 180.80353 * 9 5 4 36 36 H 1.09008 * 109.45528 * 60.82642 * 9 5 4 37 37 H 1.09000 * 109.47095 * 289.74677 * 11 10 9 38 38 H 1.09006 * 109.47048 * 49.74123 * 11 10 9 39 39 H 1.09001 * 109.46846 * 300.00269 * 12 11 10 40 40 H 1.09001 * 109.46724 * 59.99696 * 12 11 10 41 41 H 1.08997 * 109.47330 * 89.99966 * 16 15 13 42 42 H 1.09000 * 109.47444 * 209.99972 * 16 15 13 43 43 H 1.09003 * 109.47266 * 330.00093 * 16 15 13 44 44 H 1.08996 * 109.46879 * 209.99524 * 17 15 13 45 45 H 1.08990 * 109.47131 * 329.99866 * 17 15 13 46 46 H 0.97005 * 119.99527 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.46481 * 58.27472 * 26 10 9 48 48 H 1.08994 * 109.46283 * 178.25325 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0413 -0.7233 1.2488 5 6 1.5751 -2.1813 1.2110 6 1 0.4858 -2.2163 1.2304 7 6 2.1318 -2.9271 2.4253 8 8 1.6067 -4.2559 2.4502 9 6 2.0847 -2.8417 -0.0720 10 7 1.5676 -2.1134 -1.2377 11 6 1.9224 -2.7997 -2.4871 12 6 1.1606 -2.1645 -3.6520 13 6 1.5240 -2.8689 -4.9336 14 8 2.3143 -3.7888 -4.9169 15 7 0.9710 -2.4768 -6.0984 16 6 0.0160 -1.3660 -6.1185 17 6 1.3248 -3.1613 -7.3444 18 6 0.3776 -4.3109 -7.5724 19 1 -0.4090 -4.5119 -6.8601 20 6 0.5158 -5.1069 -8.6898 21 7 -0.3106 -6.1105 -8.8884 22 14 1.8767 -4.7597 -9.9213 23 1 3.0961 -5.5153 -9.5376 24 1 1.4383 -5.1821 -11.2757 25 1 2.1776 -3.3055 -9.9296 26 6 2.0410 -0.7233 -1.2481 27 1 -0.3633 -1.0277 0.0018 28 1 -0.3634 0.5153 0.8891 29 1 -0.3633 0.5122 -0.8909 30 1 1.6442 -0.2369 2.1397 31 1 3.1305 -0.6895 1.2702 32 1 3.2192 -2.9674 2.3599 33 1 1.8418 -2.4047 3.3370 34 1 1.9176 -4.7878 3.1954 35 1 1.7425 -3.8759 -0.1089 36 1 3.1745 -2.8191 -0.0838 37 1 2.9945 -2.7072 -2.6606 38 1 1.6563 -3.8540 -2.4107 39 1 0.0884 -2.2570 -3.4784 40 1 1.4266 -1.1102 -3.7283 41 1 0.5519 -0.4287 -6.2676 42 1 -0.6941 -1.5119 -6.9325 43 1 -0.5205 -1.3309 -5.1703 44 1 1.2531 -2.4610 -8.1766 45 1 2.3447 -3.5391 -7.2744 46 1 -0.2135 -6.6702 -9.6747 47 1 3.1309 -0.7108 -1.2544 48 1 1.6668 -0.2189 -2.1389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398678197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:19 Heat of formation + Delta-G solvation = -91.594711 kcal Electronic energy + Delta-G solvation = -25084.793807 eV Core-core repulsion = 21560.305655 eV Total energy + Delta-G solvation = -3524.488152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95677 -38.93129 -36.98558 -35.06912 -34.58495 -32.56146 -32.40539 -30.57267 -28.28939 -26.98993 -25.96163 -25.94604 -24.76246 -22.53443 -21.90108 -20.78602 -19.03582 -18.31260 -17.49974 -16.93013 -16.73026 -15.84350 -15.52852 -15.45146 -15.25345 -14.60705 -14.55088 -14.25648 -13.95830 -13.59399 -13.48131 -13.26901 -13.06866 -12.63310 -12.41778 -12.25749 -12.14156 -11.97083 -11.76273 -11.62373 -11.45039 -11.33688 -11.25839 -11.01673 -10.86134 -10.72330 -10.50672 -10.36393 -10.35403 -10.18206 -10.11781 -9.51163 -8.95600 -8.56211 -8.30117 -7.65966 -6.05819 -4.04331 3.31030 3.36920 3.38695 3.40372 3.63523 3.89972 4.11421 4.42080 4.52317 4.57144 4.72778 4.79558 4.97867 5.13454 5.18508 5.20187 5.23402 5.28394 5.32066 5.37208 5.40413 5.48172 5.50275 5.59143 5.61350 5.69695 5.72095 5.82030 5.88589 5.93280 5.96093 6.04245 6.10411 6.14982 6.21742 6.23175 6.36703 6.73110 6.97124 7.07589 7.10117 7.35812 7.38047 7.64293 8.29565 8.50493 8.96589 9.03664 9.54565 11.07683 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.002980 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.128073 B = 9393.612961 C = 9984.162982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.086 4.086 6 H 0.090 0.910 7 C 0.081 3.919 8 O -0.570 6.570 9 C 0.067 3.933 10 N -0.536 5.536 11 C 0.074 3.926 12 C -0.133 4.133 13 C 0.507 3.493 14 O -0.545 6.545 15 N -0.599 5.599 16 C 0.084 3.916 17 C 0.215 3.785 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.877 3.123 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.053 3.947 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.031 0.969 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 14.573 22.302 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.105 4.105 6 H 0.109 0.891 7 C 0.003 3.997 8 O -0.375 6.375 9 C -0.061 4.061 10 N -0.261 5.261 11 C -0.054 4.054 12 C -0.173 4.173 13 C 0.293 3.707 14 O -0.423 6.423 15 N -0.331 5.331 16 C -0.060 4.060 17 C 0.094 3.906 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.075 4.075 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.568 14.160 21.635 26.102 hybrid contribution 1.733 -0.073 -0.323 1.765 sum 5.301 14.087 21.312 26.091 Atomic orbital electron populations 1.21772 0.94267 1.03056 1.00717 1.21131 0.97085 0.98322 0.93972 0.90981 1.21599 1.00366 0.94563 0.98216 1.21217 1.02366 0.93741 0.93127 0.89148 1.22211 0.96724 0.83207 0.97602 1.86532 1.73376 1.24930 1.52655 1.22024 0.96638 0.98379 0.89065 1.61848 1.60042 1.01828 1.02338 1.21777 0.97735 0.98792 0.87092 1.21628 1.02826 1.00233 0.92634 1.20361 0.81450 0.83937 0.84916 1.90662 1.35594 1.29574 1.86425 1.47841 1.43076 1.33676 1.08530 1.21658 0.92916 0.88612 1.02832 1.19647 0.97350 0.92847 0.80724 1.21348 1.15144 1.11792 1.08354 0.90753 1.24869 0.95877 0.94629 0.97718 1.69904 1.37452 1.17869 1.28434 0.86837 0.82826 0.79180 0.80751 1.19934 1.21084 1.19101 1.22206 0.97146 0.89679 0.98453 0.90953 0.93637 0.92886 0.91708 0.92199 0.93901 0.93648 0.77585 0.89840 0.95299 0.94180 0.89738 0.88488 0.89826 0.93804 0.90654 0.91941 0.95321 0.94640 0.92590 0.95083 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.75 37.16 0.33 -0.88 16 2 C -0.09 -0.72 3.21 -90.55 -0.29 -1.01 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.85 4.79 -26.62 -0.13 -0.97 16 5 C -0.09 -0.79 2.24 -90.54 -0.20 -0.99 16 6 H 0.09 0.95 6.58 -51.93 -0.34 0.61 16 7 C 0.08 0.63 6.43 37.15 0.24 0.87 16 8 O -0.57 -5.17 13.21 -35.23 -0.47 -5.64 16 9 C 0.07 0.76 4.63 -3.83 -0.02 0.75 16 10 N -0.54 -6.46 3.94 -234.67 -0.92 -7.38 16 11 C 0.07 1.09 4.25 -3.83 -0.02 1.07 16 12 C -0.13 -1.98 4.19 -27.89 -0.12 -2.10 16 13 C 0.51 10.50 7.67 -10.99 -0.08 10.41 16 14 O -0.54 -13.64 15.56 5.56 0.09 -13.56 16 15 N -0.60 -12.62 2.86 -182.96 -0.52 -13.14 16 16 C 0.08 1.31 10.24 59.85 0.61 1.92 16 17 C 0.22 5.39 4.23 -5.19 -0.02 5.37 16 18 C -0.53 -15.51 9.94 -34.44 -0.34 -15.85 16 19 H 0.07 2.40 8.06 -52.48 -0.42 1.97 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 22 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 23 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 26 C 0.05 0.54 4.73 -3.84 -0.02 0.52 16 27 H 0.07 0.73 6.01 -51.93 -0.31 0.42 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.38 1.70 9.12 45.56 0.42 2.11 16 35 H 0.08 1.09 7.72 -51.93 -0.40 0.69 16 36 H 0.03 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.08 1.40 7.94 -51.93 -0.41 0.99 16 39 H 0.10 1.38 7.40 -51.93 -0.38 1.00 16 40 H 0.08 1.05 6.40 -51.93 -0.33 0.71 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 43 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 44 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 45 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.78 6.22 -51.93 -0.32 0.46 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -35.45 370.26 -8.11 -43.56 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.81 Total: -0.43 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.16 Total: 1.12 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.67 Total: -47.90 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.38 Total: -19.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.45 -8.11 -43.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398678197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.034 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds