Wall clock time and date at job start Tue Mar 31 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46714 * 2 1 4 4 C 1.46501 * 120.00485 * 269.99932 * 3 2 1 5 5 C 1.50701 * 109.47226 * 270.00431 * 4 3 2 6 6 H 1.07994 * 119.99938 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00073 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99706 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99988 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46814 * 90.00424 * 9 7 5 11 11 H 1.48503 * 109.46845 * 210.00231 * 9 7 5 12 12 H 1.48499 * 109.47050 * 330.00343 * 9 7 5 13 13 C 1.34775 * 120.00005 * 90.00056 * 3 2 1 14 14 O 1.21278 * 120.00159 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99876 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46903 * 179.97438 * 15 13 3 17 17 C 1.46845 * 111.00104 * 288.01037 * 16 15 13 18 18 C 1.53037 * 109.52413 * 174.16177 * 17 16 15 19 19 C 1.53121 * 109.27599 * 59.18390 * 18 17 16 20 20 C 1.53113 * 109.15842 * 302.34204 * 19 18 17 21 21 H 1.08999 * 109.50606 * 297.71495 * 20 19 18 22 22 C 1.53000 * 109.50129 * 177.59597 * 20 19 18 23 23 O 1.42900 * 109.47283 * 65.20040 * 22 20 19 24 24 C 1.46848 * 110.99756 * 163.80631 * 16 15 13 25 25 H 1.09002 * 109.46235 * 65.82526 * 24 16 15 26 26 C 1.53003 * 109.45992 * 305.84278 * 24 16 15 27 27 H 1.09002 * 109.46751 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47141 * 299.99405 * 1 2 3 29 29 H 1.09002 * 109.47227 * 60.00027 * 1 2 3 30 30 H 1.08994 * 109.47141 * 240.00595 * 2 1 3 31 31 H 1.09002 * 109.47227 * 119.99973 * 2 1 3 32 32 H 1.09001 * 109.46941 * 30.00158 * 4 3 2 33 33 H 1.08998 * 109.47374 * 149.99964 * 4 3 2 34 34 H 0.97000 * 119.99378 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46873 * 60.00123 * 15 13 3 36 36 H 1.08994 * 109.46990 * 299.99908 * 15 13 3 37 37 H 1.08997 * 109.46724 * 294.18096 * 17 16 15 38 38 H 1.09004 * 109.46206 * 54.14956 * 17 16 15 39 39 H 1.08997 * 109.50597 * 179.12416 * 18 17 16 40 40 H 1.09004 * 109.50761 * 299.24065 * 18 17 16 41 41 H 1.08994 * 109.52194 * 62.24989 * 19 18 17 42 42 H 1.09000 * 109.51977 * 182.37469 * 19 18 17 43 43 H 1.09000 * 109.47469 * 185.20107 * 22 20 19 44 44 H 1.09002 * 109.47177 * 305.20073 * 22 20 19 45 45 H 0.96697 * 114.00330 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.46908 * 67.09491 * 26 24 16 47 47 H 1.09003 * 109.46532 * 187.08909 * 26 24 16 48 48 H 1.08995 * 109.46886 * 307.08827 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2311 -1.0958 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1261 -3.6179 9 14 5.9135 2.0970 -3.4168 10 1 5.9775 0.8758 -4.2592 11 1 6.3920 3.2644 -4.2002 12 1 6.7735 1.9182 -2.2195 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3109 2.2058 3.5889 17 6 3.7615 2.3975 3.7128 18 6 4.0485 3.4490 4.7871 19 6 3.4608 2.9817 6.1215 20 6 1.9579 2.7430 5.9526 21 1 1.4685 3.6792 5.6840 22 6 1.3732 2.2184 7.2656 23 8 1.4805 3.2276 8.2716 24 6 1.7314 1.7119 4.8445 25 1 2.2094 0.7718 5.1201 26 6 0.2298 1.4852 4.6585 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1383 34 1 3.6751 3.5166 -4.4438 35 1 2.6230 0.4187 2.5298 36 1 0.9445 1.0113 2.5302 37 1 4.2299 1.4542 3.9936 38 1 4.1663 2.7337 2.7582 39 1 5.1257 3.5797 4.8897 40 1 3.5921 4.3964 4.5002 41 1 3.9448 2.0544 6.4280 42 1 3.6261 3.7468 6.8801 43 1 0.3241 1.9614 7.1193 44 1 1.9240 1.3319 7.5801 45 1 1.1290 2.9634 9.1328 46 1 0.0702 0.6623 3.9617 47 1 -0.2224 1.2404 5.6196 48 1 -0.2280 2.3913 4.2618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412065244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:02 Heat of formation + Delta-G solvation = -86.301332 kcal Electronic energy + Delta-G solvation = -25832.253344 eV Core-core repulsion = 22307.994730 eV Total energy + Delta-G solvation = -3524.258614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98348 -38.57753 -36.78171 -35.17421 -33.58572 -32.81629 -32.68580 -30.05341 -28.55171 -27.48182 -26.18419 -25.51630 -23.05877 -22.78601 -21.43136 -21.25366 -19.71191 -18.22488 -17.63209 -16.52945 -16.31057 -15.81926 -15.39756 -15.27045 -15.01165 -14.46283 -14.28458 -14.27438 -13.67676 -13.47988 -13.30599 -13.17136 -12.79408 -12.50060 -12.26742 -12.18753 -12.09230 -11.95290 -11.82422 -11.58327 -11.25522 -11.12033 -10.95811 -10.87553 -10.73149 -10.66085 -10.50489 -10.34764 -10.17640 -10.07689 -9.96266 -9.58814 -8.81491 -8.40568 -8.04403 -7.57753 -6.01153 -4.05698 3.31209 3.38005 3.41538 3.54601 3.55455 4.06213 4.29735 4.47670 4.61015 4.73963 4.87446 5.04922 5.11723 5.16937 5.22007 5.28051 5.32829 5.33052 5.37803 5.44909 5.50025 5.55472 5.63833 5.66010 5.71856 5.80458 5.84741 5.86937 6.02885 6.04494 6.06859 6.14259 6.22092 6.25536 6.40856 6.50291 6.50738 7.03718 7.22728 7.27581 7.40072 7.51394 7.62760 7.96272 8.28050 8.51987 8.95102 9.22556 9.59553 11.06804 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.003768 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.597600 B = 7428.259487 C = 8353.085588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.522 6.522 15 C 0.031 3.969 16 N -0.512 5.512 17 C 0.055 3.945 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.079 4.079 21 H 0.088 0.912 22 C 0.079 3.921 23 O -0.571 6.571 24 C 0.090 3.910 25 H 0.038 0.962 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.024 0.976 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.376 0.624 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 -7.613 20.242 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.397 6.397 15 C -0.099 4.099 16 N -0.237 5.237 17 C -0.072 4.072 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.097 4.097 21 H 0.106 0.894 22 C 0.001 3.999 23 O -0.376 6.376 24 C -0.018 4.018 25 H 0.056 0.944 26 C -0.213 4.213 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.042 0.958 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.223 0.777 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.853 -6.093 19.442 21.198 hybrid contribution 1.038 -1.470 0.125 1.804 sum -4.815 -7.563 19.567 21.523 Atomic orbital electron populations 1.22228 0.96895 1.01265 1.02352 1.21383 0.93448 0.84474 1.02426 1.48259 1.64398 1.13106 1.07717 1.19222 0.96059 0.93656 0.78143 1.21440 0.97011 1.31750 1.06134 0.92614 1.24933 0.97760 0.94970 0.96455 1.69937 1.35652 1.33474 1.14323 0.86520 0.84826 0.77636 0.78563 1.20711 1.21094 1.19944 1.20140 0.78885 0.87124 0.84646 1.90654 1.44576 1.17682 1.86809 1.22175 1.02594 0.94201 0.90971 1.61491 1.12904 1.47232 1.02041 1.22193 0.86774 0.97157 1.01076 1.21559 1.00187 0.99724 0.93783 1.21571 0.94323 1.01100 0.97787 1.21129 0.96894 0.99966 0.91761 0.89360 1.22317 0.99207 0.89916 0.88443 1.86496 1.85891 1.42431 1.22762 1.21488 0.95301 0.95333 0.89711 0.94407 1.22083 0.94948 1.02671 1.01635 0.92296 0.93121 0.91988 0.90056 0.92090 0.95193 0.93919 0.92768 0.92765 0.88115 0.95790 0.88802 0.91666 0.90722 0.92827 0.91277 0.93178 0.93976 0.77747 0.92320 0.91970 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.75 2.46 -175.06 -0.43 -13.18 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.66 7.36 -10.98 -0.08 10.58 16 14 O -0.52 -13.31 14.43 5.56 0.08 -13.23 16 15 C 0.03 0.49 3.82 -4.97 -0.02 0.47 16 16 N -0.51 -7.81 4.12 -228.12 -0.94 -8.75 16 17 C 0.06 0.86 5.11 -3.83 -0.02 0.84 16 18 C -0.11 -1.56 6.09 -26.65 -0.16 -1.72 16 19 C -0.11 -1.29 5.15 -26.61 -0.14 -1.42 16 20 C -0.08 -0.89 2.11 -90.54 -0.19 -1.08 16 21 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 22 C 0.08 0.70 6.24 37.16 0.23 0.93 16 23 O -0.57 -5.27 13.25 -35.23 -0.47 -5.73 16 24 C 0.09 1.05 1.96 -67.72 -0.13 0.92 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 C -0.16 -1.56 8.44 37.16 0.31 -1.24 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.05 0.78 7.31 -51.93 -0.38 0.40 16 36 H 0.10 1.34 4.58 -51.93 -0.24 1.10 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 1.80 6.36 -51.93 -0.33 1.47 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 43 H 0.05 0.38 6.06 -51.93 -0.31 0.06 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 1.67 9.12 45.56 0.42 2.08 16 46 H 0.06 0.55 6.41 -51.93 -0.33 0.21 16 47 H 0.06 0.49 6.01 -51.93 -0.31 0.17 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -34.20 369.39 -8.37 -42.57 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.61 Total: 0.87 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.29 Total: 0.97 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.63 Total: -48.03 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.39 Total: -18.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.20 -8.37 -42.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412065244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.729 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds