Wall clock time and date at job start Tue Mar 31 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46714 * 2 1 4 4 C 1.46501 * 120.00485 * 269.99932 * 3 2 1 5 5 C 1.50701 * 109.47226 * 270.00431 * 4 3 2 6 6 H 1.07994 * 119.99938 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00073 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99706 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99988 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46814 * 90.00424 * 9 7 5 11 11 H 1.48503 * 109.46845 * 210.00231 * 9 7 5 12 12 H 1.48499 * 109.47050 * 330.00343 * 9 7 5 13 13 C 1.34775 * 120.00005 * 90.00056 * 3 2 1 14 14 O 1.21278 * 120.00159 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99876 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46903 * 179.97438 * 15 13 3 17 17 C 1.46845 * 111.00104 * 288.01037 * 16 15 13 18 18 C 1.53037 * 109.52413 * 174.16177 * 17 16 15 19 19 C 1.53121 * 109.27599 * 59.18390 * 18 17 16 20 20 C 1.53113 * 109.15842 * 302.34204 * 19 18 17 21 21 H 1.08999 * 109.50606 * 297.71495 * 20 19 18 22 22 C 1.53000 * 109.50129 * 177.59597 * 20 19 18 23 23 O 1.42900 * 109.47283 * 65.20040 * 22 20 19 24 24 C 1.46848 * 110.99756 * 163.80631 * 16 15 13 25 25 H 1.09002 * 109.46235 * 65.82526 * 24 16 15 26 26 C 1.53003 * 109.45992 * 305.84278 * 24 16 15 27 27 H 1.09002 * 109.46751 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47141 * 299.99405 * 1 2 3 29 29 H 1.09002 * 109.47227 * 60.00027 * 1 2 3 30 30 H 1.08994 * 109.47141 * 240.00595 * 2 1 3 31 31 H 1.09002 * 109.47227 * 119.99973 * 2 1 3 32 32 H 1.09001 * 109.46941 * 30.00158 * 4 3 2 33 33 H 1.08998 * 109.47374 * 149.99964 * 4 3 2 34 34 H 0.97000 * 119.99378 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46873 * 60.00123 * 15 13 3 36 36 H 1.08994 * 109.46990 * 299.99908 * 15 13 3 37 37 H 1.08997 * 109.46724 * 294.18096 * 17 16 15 38 38 H 1.09004 * 109.46206 * 54.14956 * 17 16 15 39 39 H 1.08997 * 109.50597 * 179.12416 * 18 17 16 40 40 H 1.09004 * 109.50761 * 299.24065 * 18 17 16 41 41 H 1.08994 * 109.52194 * 62.24989 * 19 18 17 42 42 H 1.09000 * 109.51977 * 182.37469 * 19 18 17 43 43 H 1.09000 * 109.47469 * 185.20107 * 22 20 19 44 44 H 1.09002 * 109.47177 * 305.20073 * 22 20 19 45 45 H 0.96697 * 114.00330 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.46908 * 67.09491 * 26 24 16 47 47 H 1.09003 * 109.46532 * 187.08909 * 26 24 16 48 48 H 1.08995 * 109.46886 * 307.08827 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2311 -1.0958 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1261 -3.6179 9 14 5.9135 2.0970 -3.4168 10 1 5.9775 0.8758 -4.2592 11 1 6.3920 3.2644 -4.2002 12 1 6.7735 1.9182 -2.2195 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3109 2.2058 3.5889 17 6 3.7615 2.3975 3.7128 18 6 4.0485 3.4490 4.7871 19 6 3.4608 2.9817 6.1215 20 6 1.9579 2.7430 5.9526 21 1 1.4685 3.6792 5.6840 22 6 1.3732 2.2184 7.2656 23 8 1.4805 3.2276 8.2716 24 6 1.7314 1.7119 4.8445 25 1 2.2094 0.7718 5.1201 26 6 0.2298 1.4852 4.6585 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1383 34 1 3.6751 3.5166 -4.4438 35 1 2.6230 0.4187 2.5298 36 1 0.9445 1.0113 2.5302 37 1 4.2299 1.4542 3.9936 38 1 4.1663 2.7337 2.7582 39 1 5.1257 3.5797 4.8897 40 1 3.5921 4.3964 4.5002 41 1 3.9448 2.0544 6.4280 42 1 3.6261 3.7468 6.8801 43 1 0.3241 1.9614 7.1193 44 1 1.9240 1.3319 7.5801 45 1 1.1290 2.9634 9.1328 46 1 0.0702 0.6623 3.9617 47 1 -0.2224 1.2404 5.6196 48 1 -0.2280 2.3913 4.2618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412065244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:01 Heat of formation + Delta-G solvation = -112.196832 kcal Electronic energy + Delta-G solvation = -25833.376257 eV Core-core repulsion = 22307.994730 eV Total energy + Delta-G solvation = -3525.381527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22204 -39.95281 -37.58926 -36.83267 -35.00773 -34.49804 -33.75186 -31.60331 -29.97195 -28.66081 -27.69848 -26.47014 -24.88402 -24.09637 -22.63864 -22.26775 -20.66452 -19.78920 -18.63589 -18.39098 -17.79486 -17.28669 -16.70964 -16.47625 -16.09653 -15.99929 -15.64007 -15.26824 -15.00776 -14.70045 -14.54620 -14.26376 -14.10473 -14.04444 -13.50414 -13.39371 -13.23854 -13.18021 -13.06775 -12.89105 -12.83003 -12.65703 -12.48311 -12.31875 -12.14258 -11.91762 -11.84077 -11.71345 -11.66675 -11.27369 -11.14367 -10.67177 -10.64486 -10.46754 -9.38394 -9.19959 -8.22227 -6.37350 1.34516 1.38041 1.48152 1.91972 2.22514 2.40087 2.90644 3.06761 3.44663 3.70986 3.76496 3.87967 3.98134 4.09498 4.16271 4.26593 4.33168 4.34299 4.42295 4.47754 4.49767 4.52101 4.55890 4.65846 4.71584 4.84202 4.89017 4.95192 4.99293 5.01319 5.01912 5.06766 5.07808 5.19643 5.23487 5.30458 5.37782 5.41124 5.49830 5.59121 5.88431 6.02645 6.08140 6.23151 6.71500 6.87654 6.99964 7.29445 7.59267 8.84624 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.003768 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.597600 B = 7428.259487 C = 8353.085588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.495 3.505 14 O -0.580 6.580 15 C 0.048 3.952 16 N -0.537 5.537 17 C 0.060 3.940 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.080 4.080 21 H 0.059 0.941 22 C 0.085 3.915 23 O -0.593 6.593 24 C 0.091 3.909 25 H 0.058 0.942 26 C -0.154 4.154 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.020 0.980 33 H -0.008 1.008 34 H 0.267 0.733 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.397 0.603 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -10.747 22.573 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.340 5.340 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.082 4.082 16 N -0.262 5.262 17 C -0.068 4.068 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.099 4.099 21 H 0.077 0.923 22 C 0.007 3.993 23 O -0.402 6.402 24 C -0.016 4.016 25 H 0.076 0.924 26 C -0.211 4.211 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.038 0.962 33 H 0.010 0.990 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.148 0.852 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.247 0.753 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.079 -9.284 21.810 24.470 hybrid contribution 1.060 -0.443 -0.579 1.286 sum -5.019 -9.727 21.231 23.886 Atomic orbital electron populations 1.22158 0.94515 1.03526 1.01664 1.21734 0.95384 0.81404 1.03736 1.48298 1.64473 1.15075 1.06133 1.18626 0.95136 0.91327 0.80513 1.21707 0.97921 1.31897 1.06418 0.93007 1.25877 1.02420 0.94479 0.96475 1.70063 1.37808 1.34241 1.14795 0.85415 0.78967 0.78228 0.78187 1.18658 1.20677 1.19830 1.21257 0.77372 0.86729 0.86304 1.90625 1.47053 1.20513 1.87785 1.22065 1.04675 0.93773 0.87695 1.61401 1.12705 1.48376 1.03724 1.22042 0.87403 0.98205 0.99173 1.21522 1.00733 0.98040 0.94705 1.21503 0.94801 1.01663 0.95989 1.21125 0.96390 0.98904 0.93522 0.92264 1.22245 1.00156 0.89953 0.86920 1.86444 1.86343 1.43224 1.24170 1.21600 0.96354 0.95898 0.87751 0.92374 1.22098 0.93459 1.02128 1.03462 0.88445 0.92081 0.94459 0.91108 0.88373 0.96221 0.98980 0.92449 0.90466 0.85211 0.93989 0.93500 0.90813 0.93470 0.91099 0.91498 0.91566 0.92109 0.75326 0.91088 0.89194 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.10 3.04 5.93 86.38 0.51 3.55 16 3 N -0.61 -26.36 2.46 -826.15 -2.03 -28.38 16 4 C 0.27 14.79 5.16 85.63 0.44 15.24 16 5 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 9 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.50 21.38 7.36 87.66 0.65 22.02 16 14 O -0.58 -31.59 14.43 -3.02 -0.04 -31.64 16 15 C 0.05 1.42 3.82 85.56 0.33 1.74 16 16 N -0.54 -15.96 4.12 -875.63 -3.61 -19.57 16 17 C 0.06 1.87 5.11 86.33 0.44 2.31 16 18 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 19 C -0.10 -2.24 5.15 30.67 0.16 -2.08 16 20 C -0.08 -1.68 2.11 -10.74 -0.02 -1.70 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 C 0.09 1.20 6.24 71.98 0.45 1.65 16 23 O -0.59 -9.42 13.25 -148.98 -1.97 -11.39 16 24 C 0.09 1.88 1.96 44.94 0.09 1.97 16 25 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 26 C -0.15 -2.55 8.44 71.98 0.61 -1.94 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.07 2.30 8.07 -2.39 -0.02 2.29 16 31 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 32 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 33 H -0.01 -0.52 7.42 -2.39 -0.02 -0.53 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.08 1.94 7.31 -2.39 -0.02 1.92 16 36 H 0.13 3.03 4.58 -2.39 -0.01 3.02 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.91 6.36 -2.38 -0.02 1.89 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.50 7.90 -2.39 -0.02 1.48 16 43 H 0.07 0.72 6.06 -2.39 -0.01 0.71 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.40 2.35 9.12 -74.06 -0.68 1.67 16 46 H 0.07 1.00 6.41 -2.39 -0.02 0.98 16 47 H 0.09 1.00 6.01 -2.39 -0.01 0.98 16 48 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -80.65 369.39 0.19 -80.45 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.26 Total: 14.19 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.27 Total: 5.76 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -5.35 Total: -105.26 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -2.02 Total: -43.03 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -80.65 0.19 -80.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412065244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.743 kcal (2) G-P(sol) polarization free energy of solvation -80.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds