Wall clock time and date at job start Tue Mar 31 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47507 * 2 1 4 4 C 1.46497 * 119.99960 * 89.99837 * 3 2 1 5 5 C 1.50703 * 109.47321 * 270.00007 * 4 3 2 6 6 H 1.07999 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00336 * 179.72339 * 5 4 3 8 8 N 1.31505 * 120.00139 * 180.27807 * 7 5 4 9 9 Si 1.86802 * 119.99818 * 0.28210 * 7 5 4 10 10 H 1.48503 * 109.47121 * 89.99415 * 9 7 5 11 11 H 1.48498 * 109.47188 * 210.00026 * 9 7 5 12 12 H 1.48505 * 109.46897 * 329.99842 * 9 7 5 13 13 C 1.34777 * 119.99958 * 270.00281 * 3 2 1 14 14 O 1.21277 * 119.99975 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00002 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47194 * 173.74917 * 15 13 3 17 17 C 1.46843 * 110.99888 * 169.40112 * 16 15 13 18 18 C 1.53039 * 109.52150 * 185.84158 * 17 16 15 19 19 H 1.09001 * 109.49828 * 180.88147 * 18 17 16 20 20 C 1.52996 * 109.53642 * 60.78126 * 18 17 16 21 21 C 1.53121 * 109.27453 * 300.81832 * 18 17 16 22 22 C 1.53116 * 109.16301 * 57.65919 * 21 18 17 23 23 H 1.09003 * 109.50244 * 62.27861 * 22 21 18 24 24 C 1.52995 * 109.50551 * 182.40378 * 22 21 18 25 25 O 1.42899 * 109.47472 * 184.80278 * 24 22 21 26 26 C 1.46840 * 110.99831 * 293.61291 * 16 15 13 27 27 H 1.08997 * 109.47567 * 60.00118 * 1 2 3 28 28 H 1.09004 * 109.47546 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47200 * 299.99843 * 1 2 3 30 30 H 1.09006 * 109.47095 * 239.99612 * 2 1 3 31 31 H 1.09004 * 109.47314 * 120.00154 * 2 1 3 32 32 H 1.09005 * 109.46831 * 150.00807 * 4 3 2 33 33 H 1.08996 * 109.47238 * 30.00359 * 4 3 2 34 34 H 0.97007 * 120.00257 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46970 * 293.75066 * 15 13 3 36 36 H 1.08998 * 109.46826 * 53.74551 * 15 13 3 37 37 H 1.09002 * 109.46351 * 305.85564 * 17 16 15 38 38 H 1.09000 * 109.46510 * 65.82407 * 17 16 15 39 39 H 1.09005 * 109.47229 * 300.17673 * 20 18 17 40 40 H 1.08998 * 109.47508 * 60.17396 * 20 18 17 41 41 H 1.09002 * 109.47261 * 180.17997 * 20 18 17 42 42 H 1.08996 * 109.52259 * 297.74516 * 21 18 17 43 43 H 1.09003 * 109.57180 * 177.59245 * 21 18 17 44 44 H 1.09001 * 109.46755 * 304.80255 * 24 22 21 45 45 H 1.09000 * 109.47424 * 64.79676 * 24 22 21 46 46 H 0.96701 * 114.00291 * 179.97438 * 25 24 22 47 47 H 1.09005 * 109.46234 * 294.17583 * 26 16 15 48 48 H 1.09002 * 109.46895 * 54.14053 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 1.2687 5 6 1.0067 2.7823 1.7038 6 1 0.1157 2.7248 1.0962 7 6 0.9934 3.5006 2.8806 8 7 -0.1040 4.1160 3.2629 9 14 2.5344 3.5996 3.9318 10 1 3.3437 4.7728 3.5147 11 1 2.1514 3.7446 5.3592 12 1 3.3332 2.3599 3.7571 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1672 15 6 1.9922 1.3059 -2.4724 16 7 2.1658 2.2494 -3.5849 17 6 2.1781 1.5464 -4.8740 18 6 2.5050 2.5372 -5.9937 19 1 2.4987 2.0181 -6.9521 20 6 3.8878 3.1453 -5.7511 21 6 1.4526 3.6493 -6.0077 22 6 1.4264 4.3337 -4.6382 23 1 2.3946 4.7952 -4.4434 24 6 0.3360 5.4069 -4.6242 25 8 0.3856 6.1203 -3.3871 26 6 1.1309 3.2909 -3.5578 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0644 2.7985 1.1383 33 1 2.5506 1.3451 2.0283 34 1 -0.1133 4.6217 4.0907 35 1 2.6993 0.4834 -2.5799 36 1 0.9751 0.9143 -2.4832 37 1 2.9335 0.7609 -4.8521 38 1 1.1989 1.1034 -5.0555 39 1 3.8939 3.6630 -4.7919 40 1 4.6365 2.3532 -5.7412 41 1 4.1182 3.8531 -6.5474 42 1 0.4730 3.2212 -6.2198 43 1 1.7045 4.3807 -6.7756 44 1 0.4976 6.0998 -5.4500 45 1 -0.6403 4.9343 -4.7323 46 1 -0.2791 6.8182 -3.3086 47 1 0.1566 2.8396 -3.7454 48 1 1.1256 3.7724 -2.5800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420936036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:57 Heat of formation + Delta-G solvation = -84.389825 kcal Electronic energy + Delta-G solvation = -26214.849001 eV Core-core repulsion = 22690.673277 eV Total energy + Delta-G solvation = -3524.175725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91390 -38.60348 -36.53183 -35.29368 -33.98429 -32.55718 -32.07139 -30.16351 -28.60685 -26.83130 -26.58952 -25.66837 -23.25481 -22.64766 -21.67368 -21.25916 -18.81855 -18.25988 -17.09357 -16.86043 -16.44179 -15.94408 -15.63740 -15.05914 -14.73300 -14.36279 -14.09834 -13.96077 -13.85302 -13.34883 -13.17723 -13.09428 -12.96866 -12.58328 -12.48955 -12.38096 -12.02013 -11.70238 -11.55655 -11.32227 -11.25778 -11.16844 -11.05186 -10.86228 -10.62995 -10.55015 -10.40158 -10.27511 -10.12293 -10.02405 -9.80696 -9.41175 -8.83088 -8.51340 -8.03069 -7.60099 -6.01695 -3.99046 3.34334 3.40019 3.42849 3.46624 3.69937 4.19775 4.30517 4.46266 4.73906 4.80785 4.98276 5.00705 5.15371 5.27097 5.33312 5.35216 5.43767 5.47690 5.49911 5.55657 5.59355 5.62938 5.64319 5.73013 5.75989 5.81469 5.84054 5.88310 5.96409 6.08345 6.14532 6.16056 6.33479 6.38309 6.57257 6.62182 6.76239 6.86163 7.01793 7.20093 7.32215 7.47961 7.69612 7.81423 8.37857 8.55479 9.01895 9.15154 9.59650 11.11671 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.004656 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.871792 B = 6012.805027 C = 6786.431205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.114 3.886 3 N -0.598 5.598 4 C 0.217 3.783 5 C -0.522 4.522 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.508 3.492 14 O -0.516 6.516 15 C 0.039 3.961 16 N -0.517 5.517 17 C 0.059 3.941 18 C -0.084 4.084 19 H 0.071 0.929 20 C -0.142 4.142 21 C -0.110 4.110 22 C -0.083 4.083 23 H 0.091 0.909 24 C 0.082 3.918 25 O -0.561 6.561 26 C 0.063 3.937 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.376 0.624 47 H 0.021 0.979 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -6.388 -18.712 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 N -0.332 5.332 4 C 0.096 3.904 5 C -0.560 4.560 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.391 6.391 15 C -0.092 4.092 16 N -0.241 5.241 17 C -0.069 4.069 18 C -0.103 4.103 19 H 0.089 0.911 20 C -0.199 4.199 21 C -0.148 4.148 22 C -0.102 4.102 23 H 0.109 0.891 24 C 0.004 3.996 25 O -0.365 6.365 26 C -0.064 4.064 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.222 0.778 47 H 0.039 0.961 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.112 -5.850 -18.378 19.536 hybrid contribution -0.777 -0.031 0.425 0.886 sum 2.334 -5.881 -17.954 19.036 Atomic orbital electron populations 1.22237 0.96177 1.00800 1.03658 1.21370 0.94702 0.83483 1.01498 1.47964 1.64874 1.13305 1.07024 1.19637 0.97991 0.92698 0.80031 1.21345 0.97352 1.30580 1.06729 0.90647 1.24848 0.95903 0.94868 0.97412 1.69895 1.27137 1.33389 1.23408 0.86875 0.83994 0.79263 0.79677 1.19952 1.21240 1.19155 1.20154 0.78883 0.87002 0.84639 1.90680 1.44598 1.17053 1.86726 1.22030 1.01125 0.95211 0.90869 1.61495 1.49106 1.12557 1.00918 1.22141 0.99647 0.95801 0.89311 1.21100 0.96032 0.95805 0.97317 0.91092 1.21784 0.95017 1.00484 1.02660 1.21618 0.98803 0.97762 0.96597 1.21167 0.99940 0.94715 0.94377 0.89063 1.22154 0.97882 0.93482 0.86125 1.86657 1.59891 1.52442 1.37556 1.22193 0.90377 0.91985 1.01854 0.93425 0.92905 0.90186 0.92078 0.90806 0.94642 0.95498 0.92712 0.88731 0.92613 0.90880 0.95244 0.90517 0.93192 0.93665 0.92319 0.91796 0.93987 0.94219 0.77801 0.96124 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.18 37.15 0.38 -2.33 16 2 C 0.11 1.80 5.89 -4.05 -0.02 1.78 16 3 N -0.60 -12.48 2.46 -175.06 -0.43 -12.91 16 4 C 0.22 5.40 4.27 -5.19 -0.02 5.38 16 5 C -0.52 -15.04 9.48 -34.44 -0.33 -15.37 16 6 H 0.08 2.38 7.67 -52.49 -0.40 1.97 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 10 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.51 10.63 7.20 -10.98 -0.08 10.55 16 14 O -0.52 -13.10 14.29 5.56 0.08 -13.02 16 15 C 0.04 0.61 3.91 -4.97 -0.02 0.59 16 16 N -0.52 -7.93 3.63 -236.11 -0.86 -8.78 16 17 C 0.06 0.69 4.90 -3.84 -0.02 0.67 16 18 C -0.08 -0.87 3.21 -90.54 -0.29 -1.16 16 19 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 20 C -0.14 -1.59 8.75 37.16 0.33 -1.26 16 21 C -0.11 -1.16 4.79 -26.61 -0.13 -1.29 16 22 C -0.08 -1.15 2.24 -90.54 -0.20 -1.35 16 23 H 0.09 1.45 6.58 -51.93 -0.34 1.11 16 24 C 0.08 1.04 6.43 37.16 0.24 1.27 16 25 O -0.56 -8.68 13.21 -35.23 -0.47 -9.14 16 26 C 0.06 1.05 4.29 -3.84 -0.02 1.03 16 27 H 0.05 0.76 7.12 -51.93 -0.37 0.39 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.56 7.26 -51.93 -0.38 1.19 16 30 H 0.06 0.76 6.61 -51.93 -0.34 0.42 16 31 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 32 H 0.04 0.95 6.86 -51.93 -0.36 0.60 16 33 H 0.03 0.64 6.94 -51.93 -0.36 0.28 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.09 1.23 7.55 -51.93 -0.39 0.84 16 36 H 0.06 0.82 6.83 -51.93 -0.35 0.46 16 37 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 1.08 6.01 -51.93 -0.31 0.77 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.38 3.97 9.12 45.56 0.42 4.39 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.11 2.27 5.76 -51.93 -0.30 1.98 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -35.38 366.73 -8.04 -43.42 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.71 Total: 4.30 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.28 Total: 0.51 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.51 Total: -48.92 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.39 Total: -22.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.38 -8.04 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420936036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.974 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds