Wall clock time and date at job start Tue Mar 31 2020 04:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47507 * 2 1 4 4 C 1.46497 * 119.99960 * 89.99837 * 3 2 1 5 5 C 1.50703 * 109.47321 * 270.00007 * 4 3 2 6 6 H 1.07999 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00336 * 179.72339 * 5 4 3 8 8 N 1.31505 * 120.00139 * 180.27807 * 7 5 4 9 9 Si 1.86802 * 119.99818 * 0.28210 * 7 5 4 10 10 H 1.48503 * 109.47121 * 89.99415 * 9 7 5 11 11 H 1.48498 * 109.47188 * 210.00026 * 9 7 5 12 12 H 1.48505 * 109.46897 * 329.99842 * 9 7 5 13 13 C 1.34777 * 119.99958 * 270.00281 * 3 2 1 14 14 O 1.21277 * 119.99975 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00002 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47194 * 173.74917 * 15 13 3 17 17 C 1.46843 * 110.99888 * 169.40112 * 16 15 13 18 18 C 1.53039 * 109.52150 * 185.84158 * 17 16 15 19 19 H 1.09001 * 109.49828 * 180.88147 * 18 17 16 20 20 C 1.52996 * 109.53642 * 60.78126 * 18 17 16 21 21 C 1.53121 * 109.27453 * 300.81832 * 18 17 16 22 22 C 1.53116 * 109.16301 * 57.65919 * 21 18 17 23 23 H 1.09003 * 109.50244 * 62.27861 * 22 21 18 24 24 C 1.52995 * 109.50551 * 182.40378 * 22 21 18 25 25 O 1.42899 * 109.47472 * 184.80278 * 24 22 21 26 26 C 1.46840 * 110.99831 * 293.61291 * 16 15 13 27 27 H 1.08997 * 109.47567 * 60.00118 * 1 2 3 28 28 H 1.09004 * 109.47546 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47200 * 299.99843 * 1 2 3 30 30 H 1.09006 * 109.47095 * 239.99612 * 2 1 3 31 31 H 1.09004 * 109.47314 * 120.00154 * 2 1 3 32 32 H 1.09005 * 109.46831 * 150.00807 * 4 3 2 33 33 H 1.08996 * 109.47238 * 30.00359 * 4 3 2 34 34 H 0.97007 * 120.00257 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46970 * 293.75066 * 15 13 3 36 36 H 1.08998 * 109.46826 * 53.74551 * 15 13 3 37 37 H 1.09002 * 109.46351 * 305.85564 * 17 16 15 38 38 H 1.09000 * 109.46510 * 65.82407 * 17 16 15 39 39 H 1.09005 * 109.47229 * 300.17673 * 20 18 17 40 40 H 1.08998 * 109.47508 * 60.17396 * 20 18 17 41 41 H 1.09002 * 109.47261 * 180.17997 * 20 18 17 42 42 H 1.08996 * 109.52259 * 297.74516 * 21 18 17 43 43 H 1.09003 * 109.57180 * 177.59245 * 21 18 17 44 44 H 1.09001 * 109.46755 * 304.80255 * 24 22 21 45 45 H 1.09000 * 109.47424 * 64.79676 * 24 22 21 46 46 H 0.96701 * 114.00291 * 179.97438 * 25 24 22 47 47 H 1.09005 * 109.46234 * 294.17583 * 26 16 15 48 48 H 1.09002 * 109.46895 * 54.14053 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 1.2687 5 6 1.0067 2.7823 1.7038 6 1 0.1157 2.7248 1.0962 7 6 0.9934 3.5006 2.8806 8 7 -0.1040 4.1160 3.2629 9 14 2.5344 3.5996 3.9318 10 1 3.3437 4.7728 3.5147 11 1 2.1514 3.7446 5.3592 12 1 3.3332 2.3599 3.7571 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1672 15 6 1.9922 1.3059 -2.4724 16 7 2.1658 2.2494 -3.5849 17 6 2.1781 1.5464 -4.8740 18 6 2.5050 2.5372 -5.9937 19 1 2.4987 2.0181 -6.9521 20 6 3.8878 3.1453 -5.7511 21 6 1.4526 3.6493 -6.0077 22 6 1.4264 4.3337 -4.6382 23 1 2.3946 4.7952 -4.4434 24 6 0.3360 5.4069 -4.6242 25 8 0.3856 6.1203 -3.3871 26 6 1.1309 3.2909 -3.5578 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0644 2.7985 1.1383 33 1 2.5506 1.3451 2.0283 34 1 -0.1133 4.6217 4.0907 35 1 2.6993 0.4834 -2.5799 36 1 0.9751 0.9143 -2.4832 37 1 2.9335 0.7609 -4.8521 38 1 1.1989 1.1034 -5.0555 39 1 3.8939 3.6630 -4.7919 40 1 4.6365 2.3532 -5.7412 41 1 4.1182 3.8531 -6.5474 42 1 0.4730 3.2212 -6.2198 43 1 1.7045 4.3807 -6.7756 44 1 0.4976 6.0998 -5.4500 45 1 -0.6403 4.9343 -4.7323 46 1 -0.2791 6.8182 -3.3086 47 1 0.1566 2.8396 -3.7454 48 1 1.1256 3.7724 -2.5800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420936036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:55 Heat of formation + Delta-G solvation = -112.189740 kcal Electronic energy + Delta-G solvation = -26216.054496 eV Core-core repulsion = 22690.673277 eV Total energy + Delta-G solvation = -3525.381219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20137 -39.97598 -37.66746 -36.94384 -35.18496 -34.68903 -33.10532 -31.82597 -30.22893 -28.28511 -27.66258 -26.65212 -24.74545 -24.15858 -23.21645 -22.30459 -19.95465 -19.69124 -19.06353 -18.21914 -17.92020 -17.32958 -16.83908 -16.55208 -16.16589 -15.74477 -15.47412 -15.17934 -15.00120 -14.65829 -14.59407 -14.39592 -14.19383 -14.15207 -13.94682 -13.80428 -13.50660 -13.12496 -13.01835 -12.79768 -12.58384 -12.40469 -12.33002 -12.14205 -12.00604 -11.97075 -11.90073 -11.62624 -11.54767 -11.21374 -11.15055 -10.88294 -10.80482 -10.45755 -9.37698 -9.16807 -8.31426 -6.34469 1.30907 1.36137 1.43563 1.86793 2.27355 2.31875 2.97554 3.02968 3.34060 3.68794 3.81582 3.94941 4.04492 4.10780 4.14166 4.24357 4.30336 4.38519 4.44339 4.47719 4.52571 4.60461 4.65338 4.68112 4.73146 4.79560 4.82364 4.88261 4.93249 4.94935 4.99325 5.01871 5.02236 5.20911 5.26738 5.34283 5.43706 5.46801 5.50442 5.67370 5.72204 6.00599 6.24371 6.29623 6.66237 6.79371 6.90822 7.25740 7.54422 8.85579 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.004656 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.871792 B = 6012.805027 C = 6786.431205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.605 5.605 4 C 0.225 3.775 5 C -0.523 4.523 6 H 0.029 0.971 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.945 3.055 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.238 1.238 13 C 0.496 3.504 14 O -0.573 6.573 15 C 0.050 3.950 16 N -0.534 5.534 17 C 0.057 3.943 18 C -0.082 4.082 19 H 0.105 0.895 20 C -0.139 4.139 21 C -0.103 4.103 22 C -0.082 4.082 23 H 0.061 0.939 24 C 0.077 3.923 25 O -0.600 6.600 26 C 0.072 3.928 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.013 0.987 33 H 0.048 0.952 34 H 0.266 0.734 35 H 0.133 0.867 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.392 0.608 47 H 0.024 0.976 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -9.248 -21.108 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.338 5.338 4 C 0.103 3.897 5 C -0.562 4.562 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.768 3.232 10 H -0.207 1.207 11 H -0.200 1.200 12 H -0.161 1.161 13 C 0.284 3.716 14 O -0.452 6.452 15 C -0.080 4.080 16 N -0.259 5.259 17 C -0.070 4.070 18 C -0.101 4.101 19 H 0.123 0.877 20 C -0.196 4.196 21 C -0.140 4.140 22 C -0.101 4.101 23 H 0.079 0.921 24 C -0.001 4.001 25 O -0.408 6.408 26 C -0.056 4.056 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.241 0.759 47 H 0.042 0.958 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.255 -8.767 -20.802 22.971 hybrid contribution -1.224 0.884 1.122 1.881 sum 3.032 -7.884 -19.679 21.415 Atomic orbital electron populations 1.22149 0.96495 1.02556 1.00915 1.21761 0.94369 0.80938 1.04496 1.48097 1.64811 1.15159 1.05727 1.19292 0.94998 0.92782 0.82647 1.21542 0.97482 1.31025 1.06170 0.95221 1.25821 0.99532 0.94392 0.99066 1.70051 1.29740 1.34682 1.24320 0.85756 0.79517 0.80060 0.77835 1.20670 1.19970 1.16100 1.21247 0.77382 0.86588 0.86364 1.90652 1.47101 1.19765 1.87704 1.22002 1.02845 0.95263 0.87925 1.61454 1.48759 1.12964 1.02674 1.22313 1.01087 0.96254 0.87346 1.21179 0.94990 0.95577 0.98316 0.87733 1.21725 0.96156 1.00710 1.01004 1.21604 0.99859 0.98142 0.94395 1.21176 0.98719 0.94423 0.95775 0.92068 1.22358 0.98139 0.93756 0.85801 1.86625 1.61085 1.53531 1.39573 1.21935 0.91142 0.92946 0.99574 0.94105 0.88746 0.95008 0.87322 0.89479 0.96927 0.93384 0.92469 0.84979 0.91161 0.88995 0.93795 0.94344 0.92505 0.92423 0.90826 0.89912 0.91180 0.92989 0.75927 0.95750 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 10.18 71.98 0.73 -4.29 16 2 C 0.11 3.13 5.89 86.38 0.51 3.64 16 3 N -0.61 -25.37 2.46 -826.15 -2.03 -27.40 16 4 C 0.23 11.43 4.27 85.63 0.37 11.79 16 5 C -0.52 -31.74 9.48 25.60 0.24 -31.50 16 6 H 0.03 2.01 7.67 -2.91 -0.02 1.99 16 7 C 0.01 0.57 5.47 84.66 0.46 1.03 16 8 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 9 Si 0.95 46.28 27.47 68.60 1.88 48.17 16 10 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.24 -10.45 6.54 99.48 0.65 -9.79 16 13 C 0.50 21.20 7.20 87.66 0.63 21.84 16 14 O -0.57 -30.96 14.29 -3.02 -0.04 -31.01 16 15 C 0.05 1.49 3.91 85.56 0.33 1.83 16 16 N -0.53 -15.94 3.63 -900.92 -3.27 -19.21 16 17 C 0.06 1.13 4.90 86.33 0.42 1.55 16 18 C -0.08 -1.42 3.21 -10.74 -0.03 -1.45 16 19 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 20 C -0.14 -2.84 8.75 71.98 0.63 -2.21 16 21 C -0.10 -1.88 4.79 30.67 0.15 -1.74 16 22 C -0.08 -2.28 2.24 -10.74 -0.02 -2.31 16 23 H 0.06 2.06 6.58 -2.39 -0.02 2.05 16 24 C 0.08 1.96 6.43 71.98 0.46 2.42 16 25 O -0.60 -19.88 13.21 -148.98 -1.97 -21.85 16 26 C 0.07 2.46 4.29 86.33 0.37 2.83 16 27 H 0.04 1.28 7.12 -2.39 -0.02 1.26 16 28 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.03 1.27 7.26 -2.38 -0.02 1.25 16 30 H 0.11 2.21 6.61 -2.38 -0.02 2.20 16 31 H 0.09 2.36 7.89 -2.38 -0.02 2.34 16 32 H 0.01 0.70 6.86 -2.38 -0.02 0.68 16 33 H 0.05 2.23 6.94 -2.39 -0.02 2.21 16 34 H 0.27 16.14 8.31 -92.70 -0.77 15.37 16 35 H 0.13 2.90 7.55 -2.39 -0.02 2.88 16 36 H 0.07 1.89 6.83 -2.39 -0.02 1.88 16 37 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.04 1.09 6.01 -2.38 -0.01 1.08 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.39 8.99 9.12 -74.06 -0.68 8.31 16 47 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.04 1.99 5.76 -2.39 -0.01 1.98 16 Total: -1.00 -86.10 366.73 0.33 -85.77 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.20 Total: 23.46 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.25 Total: 3.42 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -5.00 Total: -107.97 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -2.01 Total: -52.86 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.17 kcal Total: -86.10 0.33 -85.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420936036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.415 kcal (2) G-P(sol) polarization free energy of solvation -86.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds