Wall clock time and date at job start Tue Mar 31 2020 04:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 5 5 C 1.50699 * 109.47398 * 270.00022 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00473 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47130 * 59.99997 * 9 7 5 11 11 H 1.48503 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47482 * 299.99734 * 9 7 5 13 13 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 14 14 O 1.21278 * 119.99854 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00161 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46847 * 111.00044 * 66.04660 * 16 15 13 18 18 C 1.53032 * 109.52682 * 174.15899 * 17 16 15 19 19 H 1.08997 * 109.50507 * 299.20352 * 18 17 16 20 20 C 1.53005 * 109.50662 * 179.12094 * 18 17 16 21 21 C 1.53124 * 109.27817 * 59.17958 * 18 17 16 22 22 C 1.53115 * 109.15950 * 302.35012 * 21 18 17 23 23 H 1.09005 * 109.50024 * 297.71177 * 22 21 18 24 24 C 1.53003 * 109.50458 * 177.63443 * 22 21 18 25 25 O 1.42896 * 109.47319 * 174.99553 * 24 22 21 26 26 C 1.46842 * 111.00224 * 301.83739 * 16 15 13 27 27 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 28 28 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 30 30 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 31 31 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 32 32 H 1.09000 * 109.47082 * 30.00019 * 4 3 2 33 33 H 1.09004 * 109.46754 * 150.00286 * 4 3 2 34 34 H 0.96999 * 120.00725 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47152 * 60.00245 * 15 13 3 36 36 H 1.09001 * 109.46980 * 300.00345 * 15 13 3 37 37 H 1.09003 * 109.46359 * 294.18318 * 17 16 15 38 38 H 1.09005 * 109.46108 * 54.15125 * 17 16 15 39 39 H 1.08996 * 109.46843 * 60.00101 * 20 18 17 40 40 H 1.08997 * 109.47036 * 180.02562 * 20 18 17 41 41 H 1.08998 * 109.46915 * 299.99978 * 20 18 17 42 42 H 1.09004 * 109.52120 * 62.25013 * 21 18 17 43 43 H 1.08995 * 109.52086 * 182.37567 * 21 18 17 44 44 H 1.09000 * 109.46682 * 294.99828 * 24 22 21 45 45 H 1.09003 * 109.47037 * 54.99174 * 24 22 21 46 46 H 0.96701 * 113.99843 * 179.97438 * 25 24 22 47 47 H 1.09002 * 109.46292 * 305.85719 * 26 16 15 48 48 H 1.09008 * 109.46217 * 65.82382 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3905 -2.8774 8 7 3.3497 3.1274 -3.6171 9 14 5.9134 2.0964 -3.4169 10 1 6.1401 0.6397 -3.5953 11 1 6.1613 2.7975 -4.7023 12 1 6.8413 2.6187 -2.3818 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 1.3827 3.3454 3.6267 18 6 1.6497 4.1804 4.8810 19 1 1.4882 3.5673 5.7676 20 6 0.6991 5.3791 4.9087 21 6 3.0980 4.6770 4.8589 22 6 4.0406 3.4736 4.7706 23 1 3.9173 2.8491 5.6554 24 6 5.4879 3.9632 4.6885 25 8 6.3728 2.8418 4.7236 26 6 3.7042 2.6590 3.5195 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6759 3.5185 -4.4426 35 1 2.6211 0.4186 2.5303 36 1 0.9431 1.0125 2.5299 37 1 1.5303 3.9631 2.7408 38 1 0.3565 2.9784 3.6465 39 1 -0.3316 5.0250 4.9209 40 1 0.8901 5.9736 5.8020 41 1 0.8622 5.9926 4.0226 42 1 3.2488 5.3220 3.9932 43 1 3.3050 5.2370 5.7708 44 1 5.6335 4.5121 3.7581 45 1 5.6981 4.6186 5.5337 46 1 7.3092 3.0781 4.6749 47 1 4.3642 1.7934 3.4613 48 1 3.8410 3.2800 2.6341 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420936037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:01 Heat of formation + Delta-G solvation = -93.209885 kcal Electronic energy + Delta-G solvation = -26138.495310 eV Core-core repulsion = 22613.937119 eV Total energy + Delta-G solvation = -3524.558191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.05060 -38.32536 -36.56478 -35.33770 -33.89916 -32.76828 -32.32182 -30.09006 -28.36781 -26.53952 -26.22487 -25.61092 -23.25861 -22.93119 -21.65751 -20.66454 -19.61408 -18.32119 -17.25682 -16.58259 -16.29941 -15.84678 -15.53075 -15.12236 -14.65601 -14.56351 -14.16881 -14.00596 -13.71147 -13.48824 -13.30767 -13.01753 -12.77647 -12.46432 -12.35363 -12.12062 -11.94434 -11.69675 -11.60563 -11.42430 -11.20589 -11.10355 -10.91958 -10.76037 -10.58111 -10.51466 -10.46278 -10.19987 -10.14605 -10.07889 -9.84966 -9.65893 -9.51421 -8.43879 -7.64874 -7.62457 -6.04738 -4.09475 3.30928 3.34889 3.35631 3.41796 3.97642 4.11499 4.24672 4.44399 4.88562 4.92899 5.04574 5.12684 5.15509 5.29888 5.34590 5.36634 5.44624 5.52782 5.58629 5.65030 5.67235 5.74788 5.75572 5.78121 5.80947 5.88626 5.94464 6.01503 6.06274 6.18014 6.21445 6.23852 6.28967 6.41013 6.49094 6.52426 6.70911 7.04029 7.27284 7.35047 7.44471 7.56586 7.66104 7.91685 8.23732 8.43610 8.89721 9.09331 9.55673 11.03211 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.004936 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.361949 B = 5671.243745 C = 6770.311709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.595 5.595 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.475 3.525 14 O -0.540 6.540 15 C 0.034 3.966 16 N -0.517 5.517 17 C 0.045 3.955 18 C -0.083 4.083 19 H 0.073 0.927 20 C -0.145 4.145 21 C -0.108 4.108 22 C -0.080 4.080 23 H 0.077 0.923 24 C 0.081 3.919 25 O -0.571 6.571 26 C 0.042 3.958 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.376 0.624 47 H 0.070 0.930 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 -1.277 16.550 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.261 3.739 14 O -0.419 6.419 15 C -0.098 4.098 16 N -0.239 5.239 17 C -0.082 4.082 18 C -0.102 4.102 19 H 0.091 0.909 20 C -0.203 4.203 21 C -0.146 4.146 22 C -0.099 4.099 23 H 0.095 0.905 24 C 0.003 3.997 25 O -0.376 6.376 26 C -0.085 4.085 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.222 0.778 47 H 0.088 0.912 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.644 -1.159 16.830 17.259 hybrid contribution 1.582 0.500 -1.299 2.107 sum -2.062 -0.659 15.531 15.682 Atomic orbital electron populations 1.22210 0.96778 1.01436 1.02222 1.21420 0.93510 0.84251 1.02715 1.48418 1.63098 1.13195 1.08002 1.19232 0.96164 0.93550 0.78398 1.21388 0.96918 1.31822 1.06232 0.92622 1.24924 0.97789 0.94939 0.96391 1.69919 1.35720 1.33420 1.14402 0.86576 0.84865 0.78289 0.77794 1.20222 1.21185 1.20244 1.21650 0.78581 0.87445 0.86218 1.90544 1.46226 1.18312 1.86838 1.22312 1.02997 0.96974 0.87513 1.62394 1.03974 1.17890 1.39652 1.22299 0.95415 0.92369 0.98167 1.21062 0.94396 0.96105 0.98590 0.90905 1.21781 0.99037 0.97760 1.01707 1.21603 0.94346 0.96914 1.01701 1.21104 0.91964 0.97000 0.99783 0.90455 1.22214 0.90009 0.87897 0.99556 1.86496 1.19715 1.34025 1.97375 1.22401 0.88184 0.99931 0.98000 0.92146 0.92120 0.93093 0.90018 0.91622 0.95223 0.94100 0.92704 0.88467 0.88673 0.91708 0.91827 0.92705 0.92777 0.92533 0.91624 0.92210 0.93418 0.93946 0.77799 0.91152 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.15 0.38 -1.87 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.48 2.46 -175.06 -0.43 -12.91 16 4 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 5 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.47 9.71 7.09 -10.98 -0.08 9.63 16 14 O -0.54 -12.98 11.20 5.56 0.06 -12.92 16 15 C 0.03 0.53 4.41 -4.98 -0.02 0.51 16 16 N -0.52 -8.12 4.86 -236.11 -1.15 -9.26 16 17 C 0.05 0.68 4.38 -3.84 -0.02 0.66 16 18 C -0.08 -1.02 2.88 -90.54 -0.26 -1.28 16 19 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.14 -1.55 9.20 37.16 0.34 -1.20 16 21 C -0.11 -1.35 4.57 -26.61 -0.12 -1.47 16 22 C -0.08 -1.10 2.59 -90.54 -0.23 -1.34 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 24 C 0.08 1.02 6.43 37.16 0.24 1.26 16 25 O -0.57 -7.46 13.22 -35.23 -0.47 -7.93 16 26 C 0.04 0.71 4.15 -3.84 -0.02 0.69 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.42 7.40 -51.93 -0.38 1.04 16 36 H 0.10 1.29 7.10 -51.93 -0.37 0.92 16 37 H 0.06 1.18 6.00 -51.93 -0.31 0.87 16 38 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.38 3.16 9.12 45.56 0.42 3.57 16 47 H 0.07 1.25 7.84 -51.93 -0.41 0.85 16 48 H 0.08 1.66 5.36 -51.92 -0.28 1.38 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -33.17 371.54 -8.81 -41.97 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.88 Total: 4.39 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.26 Total: 0.07 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.84 Total: -48.15 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.40 Total: -20.85 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.17 -8.81 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420936037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.237 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds