Wall clock time and date at job start Tue Mar 31 2020 04:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 5 5 C 1.50699 * 109.47398 * 270.00022 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00473 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47130 * 59.99997 * 9 7 5 11 11 H 1.48503 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47482 * 299.99734 * 9 7 5 13 13 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 14 14 O 1.21278 * 119.99854 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00161 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46847 * 111.00044 * 66.04660 * 16 15 13 18 18 C 1.53032 * 109.52682 * 174.15899 * 17 16 15 19 19 H 1.08997 * 109.50507 * 299.20352 * 18 17 16 20 20 C 1.53005 * 109.50662 * 179.12094 * 18 17 16 21 21 C 1.53124 * 109.27817 * 59.17958 * 18 17 16 22 22 C 1.53115 * 109.15950 * 302.35012 * 21 18 17 23 23 H 1.09005 * 109.50024 * 297.71177 * 22 21 18 24 24 C 1.53003 * 109.50458 * 177.63443 * 22 21 18 25 25 O 1.42896 * 109.47319 * 174.99553 * 24 22 21 26 26 C 1.46842 * 111.00224 * 301.83739 * 16 15 13 27 27 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 28 28 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 30 30 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 31 31 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 32 32 H 1.09000 * 109.47082 * 30.00019 * 4 3 2 33 33 H 1.09004 * 109.46754 * 150.00286 * 4 3 2 34 34 H 0.96999 * 120.00725 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47152 * 60.00245 * 15 13 3 36 36 H 1.09001 * 109.46980 * 300.00345 * 15 13 3 37 37 H 1.09003 * 109.46359 * 294.18318 * 17 16 15 38 38 H 1.09005 * 109.46108 * 54.15125 * 17 16 15 39 39 H 1.08996 * 109.46843 * 60.00101 * 20 18 17 40 40 H 1.08997 * 109.47036 * 180.02562 * 20 18 17 41 41 H 1.08998 * 109.46915 * 299.99978 * 20 18 17 42 42 H 1.09004 * 109.52120 * 62.25013 * 21 18 17 43 43 H 1.08995 * 109.52086 * 182.37567 * 21 18 17 44 44 H 1.09000 * 109.46682 * 294.99828 * 24 22 21 45 45 H 1.09003 * 109.47037 * 54.99174 * 24 22 21 46 46 H 0.96701 * 113.99843 * 179.97438 * 25 24 22 47 47 H 1.09002 * 109.46292 * 305.85719 * 26 16 15 48 48 H 1.09008 * 109.46217 * 65.82382 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3905 -2.8774 8 7 3.3497 3.1274 -3.6171 9 14 5.9134 2.0964 -3.4169 10 1 6.1401 0.6397 -3.5953 11 1 6.1613 2.7975 -4.7023 12 1 6.8413 2.6187 -2.3818 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 1.3827 3.3454 3.6267 18 6 1.6497 4.1804 4.8810 19 1 1.4882 3.5673 5.7676 20 6 0.6991 5.3791 4.9087 21 6 3.0980 4.6770 4.8589 22 6 4.0406 3.4736 4.7706 23 1 3.9173 2.8491 5.6554 24 6 5.4879 3.9632 4.6885 25 8 6.3728 2.8418 4.7236 26 6 3.7042 2.6590 3.5195 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6759 3.5185 -4.4426 35 1 2.6211 0.4186 2.5303 36 1 0.9431 1.0125 2.5299 37 1 1.5303 3.9631 2.7408 38 1 0.3565 2.9784 3.6465 39 1 -0.3316 5.0250 4.9209 40 1 0.8901 5.9736 5.8020 41 1 0.8622 5.9926 4.0226 42 1 3.2488 5.3220 3.9932 43 1 3.3050 5.2370 5.7708 44 1 5.6335 4.5121 3.7581 45 1 5.6981 4.6186 5.5337 46 1 7.3092 3.0781 4.6749 47 1 4.3642 1.7934 3.4613 48 1 3.8410 3.2800 2.6341 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420936037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:00 Heat of formation + Delta-G solvation = -118.112584 kcal Electronic energy + Delta-G solvation = -26139.575172 eV Core-core repulsion = 22613.937119 eV Total energy + Delta-G solvation = -3525.638053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47294 -39.66829 -37.64624 -36.91400 -35.22007 -34.80234 -33.40642 -31.62968 -29.96582 -28.07574 -27.48373 -26.65472 -25.10434 -24.24857 -23.12192 -21.71869 -20.77358 -19.90192 -18.65952 -18.24958 -17.95203 -17.38541 -16.73420 -16.57178 -16.21470 -16.01300 -15.52093 -15.30269 -14.89966 -14.75700 -14.60799 -14.35542 -14.21021 -13.89194 -13.57316 -13.42414 -13.29525 -13.17932 -13.05586 -12.78998 -12.66574 -12.60872 -12.51923 -12.22935 -12.11414 -11.92576 -11.81081 -11.61982 -11.53686 -11.31164 -11.20049 -11.10252 -10.86323 -10.67692 -9.41771 -9.08961 -8.25254 -6.40542 1.32576 1.36589 1.44132 1.79787 2.29309 2.45254 2.89002 3.03657 3.29655 3.71195 3.83194 3.89622 4.04705 4.06768 4.13913 4.27494 4.35659 4.43223 4.44605 4.52654 4.61689 4.63271 4.67020 4.72871 4.74671 4.81185 4.90872 4.93787 4.96318 4.99201 5.03360 5.05728 5.10851 5.18718 5.25516 5.29333 5.36685 5.37810 5.53887 5.58811 5.85398 5.96807 6.04281 6.06540 6.66937 6.80575 6.88736 7.25702 7.48571 8.81293 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.004936 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.361949 B = 5671.243745 C = 6770.311709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.465 3.535 14 O -0.584 6.584 15 C 0.043 3.957 16 N -0.507 5.507 17 C 0.045 3.955 18 C -0.079 4.079 19 H 0.089 0.911 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.076 4.076 23 H 0.085 0.915 24 C 0.083 3.917 25 O -0.590 6.590 26 C 0.049 3.951 27 H 0.036 0.964 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.018 0.982 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.394 0.606 47 H 0.056 0.944 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -2.744 18.988 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.253 3.747 14 O -0.466 6.466 15 C -0.088 4.088 16 N -0.228 5.228 17 C -0.082 4.082 18 C -0.097 4.097 19 H 0.107 0.893 20 C -0.198 4.198 21 C -0.142 4.142 22 C -0.095 4.095 23 H 0.103 0.897 24 C 0.004 3.996 25 O -0.398 6.398 26 C -0.079 4.079 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.036 0.964 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.043 0.957 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.244 0.756 47 H 0.075 0.925 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.605 -2.662 19.287 19.800 hybrid contribution 1.551 0.962 -2.063 2.754 sum -2.053 -1.700 17.224 17.429 Atomic orbital electron populations 1.22136 0.94429 1.03555 1.01583 1.21747 0.95423 0.81417 1.03816 1.48466 1.63501 1.15057 1.06408 1.18628 0.95089 0.91319 0.80699 1.21650 0.97878 1.31958 1.06522 0.93213 1.25843 1.02347 0.94450 0.96392 1.70043 1.37811 1.34134 1.14834 0.85500 0.79047 0.79087 0.77375 1.18424 1.20158 1.20481 1.22659 0.77403 0.87136 0.87463 1.90551 1.47905 1.20547 1.87592 1.22463 1.05226 0.96803 0.84320 1.62515 1.03534 1.18050 1.38698 1.22346 0.95953 0.91941 0.98005 1.21081 0.94604 0.96517 0.97535 0.89320 1.21752 0.99159 0.97046 1.01892 1.21598 0.94319 0.96274 1.02054 1.21112 0.93148 0.97150 0.98106 0.89713 1.22208 0.89406 0.87978 0.99962 1.86441 1.21344 1.34658 1.97388 1.22240 0.88710 0.98942 0.98012 0.94496 0.88517 0.92037 0.91219 0.88180 0.96411 0.98911 0.92406 0.86669 0.85508 0.95719 0.90301 0.91707 0.90664 0.94270 0.93944 0.89270 0.95182 0.90873 0.75627 0.92543 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.10 3.05 5.93 86.38 0.51 3.57 16 3 N -0.60 -26.01 2.46 -826.17 -2.03 -28.04 16 4 C 0.26 14.64 5.16 85.63 0.44 15.08 16 5 C -0.54 -31.99 9.39 25.60 0.24 -31.74 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 9 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.47 19.57 7.09 87.66 0.62 20.19 16 14 O -0.58 -29.99 11.20 -3.02 -0.03 -30.02 16 15 C 0.04 1.30 4.41 85.56 0.38 1.68 16 16 N -0.51 -15.46 4.86 -900.93 -4.38 -19.84 16 17 C 0.05 1.33 4.38 86.32 0.38 1.71 16 18 C -0.08 -1.81 2.88 -10.74 -0.03 -1.84 16 19 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 20 C -0.14 -2.76 9.20 71.98 0.66 -2.09 16 21 C -0.10 -2.51 4.57 30.67 0.14 -2.37 16 22 C -0.08 -2.04 2.59 -10.74 -0.03 -2.07 16 23 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 24 C 0.08 2.01 6.43 71.98 0.46 2.47 16 25 O -0.59 -14.86 13.22 -148.98 -1.97 -16.83 16 26 C 0.05 1.67 4.15 86.33 0.36 2.03 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.06 1.40 7.22 -2.38 -0.02 1.39 16 30 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 31 H 0.10 2.42 6.44 -2.39 -0.02 2.40 16 32 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 33 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 34 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.12 3.09 7.40 -2.39 -0.02 3.07 16 36 H 0.13 3.03 7.10 -2.39 -0.02 3.01 16 37 H 0.02 0.94 6.00 -2.39 -0.01 0.93 16 38 H 0.08 2.04 8.06 -2.38 -0.02 2.02 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.39 6.20 9.12 -74.06 -0.68 5.52 16 47 H 0.06 2.04 7.84 -2.39 -0.02 2.02 16 48 H 0.04 1.67 5.36 -2.38 -0.01 1.66 16 Total: -1.00 -77.07 371.54 -0.51 -77.58 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.25 Total: 21.92 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.33 Total: 4.35 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -6.12 Total: -104.82 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -2.00 Total: -46.85 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -77.07 -0.51 -77.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420936037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.529 kcal (2) G-P(sol) polarization free energy of solvation -77.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds