Wall clock time and date at job start Tue Mar 31 2020 03:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.52998 * 109.47014 * 119.99875 * 2 1 3 5 5 H 1.08999 * 109.47488 * 59.99731 * 4 2 1 6 6 O 1.42899 * 109.47232 * 299.99642 * 4 2 1 7 7 C 1.53001 * 109.47225 * 179.97438 * 4 2 1 8 8 C 1.52997 * 115.55165 * 325.58651 * 7 4 2 9 9 N 1.46499 * 109.47555 * 179.97438 * 8 7 4 10 10 C 1.34777 * 120.00199 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 8 13 13 H 1.08995 * 109.47357 * 39.71838 * 12 10 9 14 14 N 1.46895 * 109.46992 * 159.72213 * 12 10 9 15 15 C 1.52995 * 109.46732 * 279.72068 * 12 10 9 16 16 C 1.53009 * 109.47136 * 174.99999 * 15 12 10 17 17 C 1.50698 * 109.47293 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99700 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00235 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99716 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46806 * 90.00562 * 21 19 17 23 23 H 1.48497 * 109.46991 * 210.00168 * 21 19 17 24 24 H 1.48494 * 109.47401 * 330.00370 * 21 19 17 25 25 C 1.53006 * 117.49847 * 111.25096 * 7 4 2 26 26 C 1.53002 * 117.50107 * 179.91209 * 7 4 2 27 27 H 1.09003 * 109.46741 * 300.00240 * 1 2 3 28 28 H 1.08998 * 109.46880 * 59.99809 * 1 2 3 29 29 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47081 * 239.99536 * 2 1 3 31 31 H 1.09002 * 109.46659 * 299.99680 * 3 2 1 32 32 H 1.08997 * 109.47475 * 59.99778 * 3 2 1 33 33 H 1.09004 * 109.47187 * 180.02562 * 3 2 1 34 34 H 0.96693 * 114.00154 * 300.00242 * 6 4 2 35 35 H 1.08998 * 109.47382 * 59.99480 * 8 7 4 36 36 H 1.09002 * 109.47216 * 299.99917 * 8 7 4 37 37 H 0.97000 * 119.99484 * 359.97438 * 9 8 7 38 38 H 1.00898 * 111.00474 * 296.04502 * 14 12 10 39 39 H 1.00901 * 111.00088 * 60.00223 * 14 12 10 40 40 H 1.08995 * 109.47790 * 294.99945 * 15 12 10 41 41 H 1.09001 * 109.47648 * 55.00468 * 15 12 10 42 42 H 1.09003 * 109.46899 * 300.00304 * 16 15 12 43 43 H 1.09001 * 109.46469 * 59.99747 * 16 15 12 44 44 H 0.97000 * 120.00058 * 179.97438 * 20 19 17 45 45 H 1.08999 * 117.49966 * 215.00662 * 25 7 4 46 46 H 1.09002 * 117.49788 * 0.03028 * 25 7 4 47 47 H 1.09004 * 117.49800 * 359.97438 * 26 7 4 48 48 H 1.09000 * 117.50021 * 144.97896 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -1.7489 1.2493 6 8 1.5637 -0.0475 2.4160 7 6 3.5700 -0.7218 1.2490 8 6 4.2296 -0.8285 -0.1274 9 7 5.6864 -0.8165 0.0269 10 6 6.4799 -0.9002 -1.0593 11 8 5.9878 -0.9859 -2.1645 12 6 7.9784 -0.8941 -0.9000 13 1 8.2537 -1.4889 -0.0292 14 7 8.6008 -1.4669 -2.1010 15 6 8.4651 0.5439 -0.7099 16 6 9.9683 0.5400 -0.4241 17 6 10.4478 1.9565 -0.2375 18 1 9.7501 2.7773 -0.3145 19 6 11.7769 2.2043 0.0327 20 7 12.6263 1.2047 0.1270 21 14 12.3715 3.9601 0.2633 22 1 12.2672 4.3336 1.6968 23 1 13.7867 4.0649 -0.1738 24 1 11.5331 4.8774 -0.5495 25 6 4.2770 0.1276 2.3072 26 6 4.2764 -1.3986 2.4253 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.8490 0.8740 2.4821 35 1 3.9229 0.0165 -0.7438 36 1 3.9223 -1.7581 -0.6065 37 1 6.0799 -0.7476 0.9109 38 1 8.3457 -2.4367 -2.2129 39 1 8.3606 -0.9327 -2.9226 40 1 8.2691 1.1167 -1.6163 41 1 7.9371 0.9984 0.1284 42 1 10.1643 -0.0328 0.4823 43 1 10.4962 0.0855 -1.2625 44 1 13.5614 1.3791 0.3167 45 1 5.2119 0.6103 2.0228 46 1 3.6520 0.6864 3.0038 47 1 3.6512 -1.8431 3.1997 48 1 5.2109 -1.9203 2.2186 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424168934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:48 Heat of formation + Delta-G solvation = -108.497007 kcal Electronic energy + Delta-G solvation = -25118.989205 eV Core-core repulsion = 21593.768114 eV Total energy + Delta-G solvation = -3525.221090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55127 -40.40976 -37.37691 -36.75826 -35.07438 -34.81047 -34.41734 -31.93060 -29.54632 -28.17749 -28.12023 -26.80020 -24.88153 -23.37907 -22.38841 -21.55093 -21.29351 -20.15695 -18.83497 -18.19089 -17.54805 -17.46546 -17.04058 -16.59618 -16.43625 -16.21223 -16.07956 -15.58245 -15.11274 -14.90265 -14.34644 -14.21263 -14.09321 -13.82774 -13.65418 -13.55111 -13.39624 -13.01154 -12.83415 -12.79474 -12.51912 -12.41612 -12.27621 -12.21785 -11.84256 -11.77144 -11.67748 -11.64960 -11.54722 -11.26424 -11.03651 -10.95737 -10.62295 -10.48655 -10.05322 -9.63387 -8.13637 -6.23928 1.41877 1.43435 1.49180 1.54275 2.13106 2.44897 2.67656 3.19556 3.31984 3.55716 3.60820 3.66916 3.81524 3.85163 3.92138 4.02801 4.08830 4.10213 4.27632 4.31056 4.55428 4.66331 4.71032 4.74895 4.77408 4.81295 4.85475 4.89532 4.94164 4.99082 5.04491 5.11950 5.20302 5.21031 5.24797 5.37174 5.41768 5.44433 5.57372 5.84521 5.98784 6.08594 6.30493 6.39999 6.52031 6.73469 6.94903 7.10232 7.44340 8.97597 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.003117 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.763928 B = 8980.860731 C = 9570.281449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C -0.155 4.155 4 C 0.161 3.839 5 H 0.104 0.896 6 O -0.561 6.561 7 C -0.168 4.168 8 C 0.153 3.847 9 N -0.717 5.717 10 C 0.489 3.511 11 O -0.581 6.581 12 C 0.085 3.915 13 H 0.109 0.891 14 N -0.819 5.819 15 C -0.081 4.081 16 C 0.039 3.961 17 C -0.543 4.543 18 H 0.056 0.944 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.169 4.169 26 C -0.164 4.164 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.382 0.618 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.346 0.654 39 H 0.345 0.655 40 H 0.042 0.958 41 H 0.067 0.933 42 H -0.006 1.006 43 H 0.005 0.995 44 H 0.262 0.738 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.244 -4.112 4.625 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.212 4.212 4 C 0.101 3.899 5 H 0.121 0.879 6 O -0.369 6.369 7 C -0.169 4.169 8 C 0.029 3.971 9 N -0.370 5.370 10 C 0.274 3.726 11 O -0.461 6.461 12 C -0.031 4.031 13 H 0.126 0.874 14 N -0.348 5.348 15 C -0.119 4.119 16 C 0.002 3.998 17 C -0.581 4.581 18 H 0.074 0.926 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.206 4.206 26 C -0.201 4.201 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.248 0.752 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.012 0.988 43 H 0.024 0.976 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.134 0.866 47 H 0.124 0.876 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.997 -4.623 4.343 24.821 hybrid contribution 0.228 1.068 -0.177 1.107 sum -23.769 -3.555 4.166 24.392 Atomic orbital electron populations 1.21722 0.93932 1.02013 1.02045 1.21783 0.97110 0.97232 0.98444 1.21942 1.01106 0.95644 1.02531 1.21199 0.87467 0.96576 0.84644 0.87874 1.86567 1.76519 1.30031 1.43783 1.22405 0.96027 1.08332 0.90105 1.20886 0.78752 1.01935 0.95479 1.46198 1.06963 1.73979 1.09885 1.22335 0.91426 0.74510 0.84309 1.90639 1.77169 1.51605 1.26669 1.21639 0.86179 0.98942 0.96356 0.87356 1.58969 1.63110 1.07308 1.05384 1.21381 0.98067 0.92063 1.00407 1.18826 0.90808 0.94812 0.95331 1.21732 0.94167 0.94256 1.47985 0.92578 1.25898 0.97241 1.01236 0.95230 1.70103 1.03781 1.32900 1.50250 0.85541 0.77385 0.79958 0.78709 1.19601 1.21034 1.19080 1.23185 1.02328 0.94222 1.00872 1.23108 1.02229 0.95445 0.99337 0.92103 0.92525 0.92600 0.90785 0.92529 0.91418 0.92709 0.76739 0.90954 0.91787 0.75161 0.84028 0.84109 0.93909 0.91467 0.98762 0.97650 0.92938 0.88855 0.86642 0.87561 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 71.98 0.65 -1.08 16 2 C -0.13 -1.70 2.25 -10.79 -0.02 -1.72 16 3 C -0.16 -2.10 8.29 71.98 0.60 -1.51 16 4 C 0.16 2.17 3.04 30.59 0.09 2.26 16 5 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 6 O -0.56 -7.63 11.78 -148.98 -1.76 -9.39 16 7 C -0.17 -2.47 1.56 -52.18 -0.08 -2.56 16 8 C 0.15 3.03 4.46 86.38 0.39 3.42 16 9 N -0.72 -16.27 4.99 -463.06 -2.31 -18.59 16 10 C 0.49 14.60 7.07 87.66 0.62 15.22 16 11 O -0.58 -20.68 16.25 -3.04 -0.05 -20.73 16 12 C 0.08 2.76 3.15 44.17 0.14 2.90 16 13 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 14 N -0.82 -27.50 8.44 -171.82 -1.45 -28.95 16 15 C -0.08 -3.20 4.78 30.60 0.15 -3.05 16 16 C 0.04 2.03 4.86 29.85 0.15 2.17 16 17 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 18 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 19 C 0.00 0.10 5.46 84.65 0.46 0.56 16 20 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 21 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 C -0.17 -2.38 8.96 30.62 0.27 -2.11 16 26 C -0.16 -2.37 9.41 30.62 0.29 -2.08 16 27 H 0.06 0.76 7.68 -2.39 -0.02 0.75 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 1.12 6.96 -2.39 -0.02 1.10 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.73 6.78 -2.39 -0.02 0.71 16 33 H 0.05 0.87 5.64 -2.38 -0.01 0.86 16 34 H 0.38 3.65 5.85 -74.06 -0.43 3.21 16 35 H 0.07 1.58 5.33 -2.39 -0.01 1.56 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.41 8.07 5.58 -92.71 -0.52 7.56 16 38 H 0.35 9.97 9.06 -89.70 -0.81 9.16 16 39 H 0.35 11.88 8.58 -89.69 -0.77 11.11 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 44 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.09 1.49 7.01 -2.39 -0.02 1.48 16 46 H 0.12 1.33 6.38 -2.39 -0.02 1.31 16 47 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 48 H 0.09 1.41 7.01 -2.39 -0.02 1.40 16 Total: -1.00 -68.24 374.15 -0.87 -69.11 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -1.54 Total: 36.55 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 3.93 Total: -17.93 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.48 Total: -103.76 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -1.80 Total: -30.12 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.24 -0.87 -69.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424168934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.383 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds