Wall clock time and date at job start Tue Mar 31 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00215 * 2 1 4 4 C 1.46898 * 111.00282 * 123.95492 * 2 1 3 5 5 C 1.52997 * 109.47235 * 169.99761 * 4 2 1 6 6 C 1.53006 * 109.46977 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.46992 * 179.97438 * 6 5 4 8 8 C 1.46490 * 120.00322 * 269.99874 * 7 6 5 9 9 C 1.50700 * 109.47314 * 270.00006 * 8 7 6 10 10 H 1.07993 * 120.00043 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00347 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00205 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47277 * 89.99912 * 13 11 9 15 15 H 1.48500 * 109.47245 * 210.00409 * 13 11 9 16 16 H 1.48507 * 109.46654 * 330.00315 * 13 11 9 17 17 C 1.34780 * 119.99566 * 90.00440 * 7 6 5 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 7 6 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 7 6 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 7 21 21 O 1.42903 * 112.85050 * 53.80347 * 20 19 17 22 22 C 1.53784 * 113.61716 * 282.49897 * 20 19 17 23 23 C 1.53782 * 87.08225 * 220.01852 * 22 20 19 24 24 C 1.53778 * 87.08131 * 25.42819 * 23 22 20 25 25 H 1.09001 * 109.47164 * 296.04620 * 1 2 3 26 26 H 1.09005 * 109.47698 * 56.04210 * 1 2 3 27 27 H 1.08998 * 109.47621 * 176.05008 * 1 2 3 28 28 H 1.08995 * 109.47242 * 183.95720 * 3 2 1 29 29 H 1.09007 * 109.46977 * 303.95816 * 3 2 1 30 30 H 1.08999 * 109.46953 * 63.95275 * 3 2 1 31 31 H 1.08998 * 109.46968 * 49.99284 * 4 2 1 32 32 H 1.09000 * 109.46836 * 290.00265 * 4 2 1 33 33 H 1.09000 * 109.47241 * 60.00328 * 5 4 2 34 34 H 1.09002 * 109.47129 * 299.99861 * 5 4 2 35 35 H 1.09000 * 109.46856 * 60.00106 * 6 5 4 36 36 H 1.09000 * 109.46976 * 300.00431 * 6 5 4 37 37 H 1.09006 * 109.47028 * 30.00444 * 8 7 6 38 38 H 1.09002 * 109.47109 * 150.00022 * 8 7 6 39 39 H 0.96998 * 120.00161 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.47060 * 299.99722 * 19 17 7 41 41 H 1.09001 * 109.47380 * 59.99809 * 19 17 7 42 42 H 0.96705 * 113.99923 * 309.66161 * 21 20 19 43 43 H 1.09002 * 113.61067 * 334.56569 * 22 20 19 44 44 H 1.08997 * 113.61870 * 105.46505 * 22 20 19 45 45 H 1.08997 * 113.61130 * 270.87983 * 23 22 20 46 46 H 1.09003 * 113.69222 * 139.99145 * 23 22 20 47 47 H 1.08994 * 113.61671 * 220.01906 * 24 23 22 48 48 H 1.09004 * 113.69260 * 89.13079 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 6 4.0528 -1.7526 2.1554 7 7 5.4976 -1.9345 1.9949 8 6 6.0138 -3.1062 1.2831 9 6 6.2356 -4.2308 2.2613 10 1 6.0138 -4.0873 3.3084 11 6 6.7207 -5.4433 1.8193 12 7 6.9904 -5.6183 0.5440 13 14 6.9951 -6.8378 3.0317 14 1 5.7581 -7.6526 3.1372 15 1 8.1125 -7.6933 2.5577 16 1 7.3327 -6.2757 4.3642 17 6 6.3518 -1.0238 2.5023 18 8 5.9245 -0.0536 3.0913 19 6 7.8380 -1.2105 2.3367 20 6 8.5754 -0.0448 2.9986 21 8 8.1959 0.1491 4.3626 22 6 8.5614 1.2467 2.1638 23 6 10.0229 1.4494 2.5971 24 6 10.0975 -0.0755 2.7812 25 1 -0.3633 0.4512 0.9233 26 1 -0.3635 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0827 1.3432 -0.0709 29 1 1.5897 1.9164 -0.8525 30 1 1.7044 1.8723 0.9233 31 1 1.5089 -1.7406 1.1756 32 1 1.7975 -0.2248 2.0627 33 1 3.9909 0.0193 0.9322 34 1 3.7023 -1.4966 0.0450 35 1 3.5664 -2.7273 2.1939 36 1 3.8549 -1.2110 3.0804 37 1 5.2932 -3.4187 0.5273 38 1 6.9581 -2.8519 0.8016 39 1 7.3320 -6.4713 0.2331 40 1 8.1412 -2.1463 2.8064 41 1 8.0845 -1.2402 1.2753 42 1 7.2400 0.1928 4.5025 43 1 8.4431 1.0738 1.0941 44 1 7.8824 2.0078 2.5482 45 1 10.1291 2.0072 3.5275 46 1 10.6673 1.8253 1.8024 47 1 10.6585 -0.3818 3.6641 48 1 10.3993 -0.6111 1.8811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448801880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:26 Heat of formation + Delta-G solvation = -70.936949 kcal Electronic energy + Delta-G solvation = -25530.398781 eV Core-core repulsion = 22006.806417 eV Total energy + Delta-G solvation = -3523.592364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00367 -38.42128 -37.51993 -35.28604 -33.99290 -32.98130 -31.73968 -29.62730 -27.63512 -27.42862 -25.84162 -25.45738 -23.40819 -23.03345 -22.01626 -20.65731 -19.29949 -18.43249 -16.68757 -16.51180 -16.05427 -15.70094 -15.46195 -15.11363 -14.99539 -14.75632 -14.47878 -14.30858 -14.23304 -13.69424 -13.07258 -12.80142 -12.49360 -12.40320 -12.27105 -12.09127 -11.86383 -11.80428 -11.66599 -11.47501 -11.36266 -11.23435 -11.05489 -10.92238 -10.89849 -10.76058 -10.62259 -10.29520 -10.14371 -10.04688 -9.78656 -9.23235 -9.04214 -8.59604 -8.37281 -7.81115 -6.22376 -4.30206 3.20855 3.25991 3.28807 3.33923 3.74834 4.06293 4.30647 4.47944 4.84561 4.92515 5.04172 5.10123 5.11727 5.12865 5.18927 5.25722 5.34969 5.47409 5.57480 5.61199 5.66459 5.71437 5.76940 5.77758 5.87588 5.90898 5.92648 5.96219 6.00743 6.11223 6.13127 6.23683 6.40182 6.43699 6.55519 6.59458 6.64019 6.72389 7.01260 7.03850 7.12960 7.45737 7.71769 8.00208 8.14189 8.32488 8.73325 8.92867 9.38259 10.84341 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005886 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.326132 B = 4756.156243 C = 7619.386588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.128 4.128 6 C 0.121 3.879 7 N -0.589 5.589 8 C 0.236 3.764 9 C -0.540 4.540 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.521 3.479 18 O -0.582 6.582 19 C -0.156 4.156 20 C 0.132 3.868 21 O -0.553 6.553 22 C -0.160 4.160 23 C -0.135 4.135 24 C -0.129 4.129 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.266 0.734 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.389 0.611 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 10.886 -0.741 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.167 4.167 6 C -0.003 4.003 7 N -0.318 5.318 8 C 0.117 3.883 9 C -0.578 4.578 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.311 3.689 18 O -0.466 6.466 19 C -0.196 4.196 20 C 0.090 3.910 21 O -0.366 6.366 22 C -0.198 4.198 23 C -0.173 4.173 24 C -0.166 4.166 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.244 0.756 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.265 10.963 -0.942 11.477 hybrid contribution -0.786 -0.694 1.071 1.499 sum -4.051 10.269 0.129 11.040 Atomic orbital electron populations 1.22368 0.87640 1.02189 1.00141 1.61967 1.07508 1.13960 1.43732 1.22423 1.01449 0.88701 1.00007 1.22077 0.96015 0.98013 0.90819 1.21936 0.93724 1.01070 0.99961 1.21219 0.81428 1.00162 0.97538 1.48224 1.05257 1.23873 1.54399 1.19472 0.95411 0.81274 0.92181 1.21468 1.44698 0.96815 0.94846 0.92097 1.24932 0.94940 0.98532 0.95285 1.69918 1.43976 1.25228 1.13704 0.86519 0.77981 0.81827 0.81331 1.20508 1.21007 1.19704 1.20496 0.88803 0.81732 0.77861 1.90418 1.79520 1.31402 1.45273 1.22255 0.92427 1.01566 1.03343 1.21774 0.94072 0.92421 0.82733 1.86260 1.31242 1.95200 1.23857 1.23545 0.96912 0.99210 1.00090 1.22740 0.96918 0.96389 1.01221 1.23053 0.94521 0.96720 1.02333 0.95904 0.91613 0.91339 0.90891 0.91766 0.95788 0.90622 0.94843 0.91896 0.90907 0.90397 0.91143 0.94461 0.94342 0.92458 0.87106 0.88361 0.75627 0.90053 0.91010 0.90209 0.91815 0.90793 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.06 0.57 0.83 16 2 N -0.55 -7.01 5.02 -251.27 -1.26 -8.27 16 3 C 0.02 0.26 9.32 60.06 0.56 0.82 16 4 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 5 C -0.13 -2.00 5.46 -26.73 -0.15 -2.14 16 6 C 0.12 2.13 5.41 -4.04 -0.02 2.11 16 7 N -0.59 -11.81 2.46 -175.06 -0.43 -12.24 16 8 C 0.24 5.41 4.96 -5.20 -0.03 5.38 16 9 C -0.54 -13.67 9.28 -34.44 -0.32 -13.99 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -24.05 13.29 55.43 0.74 -23.32 16 13 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.52 10.24 7.43 -10.98 -0.08 10.16 16 18 O -0.58 -11.77 13.17 -14.25 -0.19 -11.96 16 19 C -0.16 -2.81 3.89 -27.88 -0.11 -2.92 16 20 C 0.13 2.18 1.10 -89.81 -0.10 2.08 16 21 O -0.55 -10.15 13.39 -55.04 -0.74 -10.89 16 22 C -0.16 -2.36 7.16 -25.92 -0.19 -2.55 16 23 C -0.14 -1.76 8.02 -25.92 -0.21 -1.97 16 24 C -0.13 -1.82 7.47 -25.92 -0.19 -2.02 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 27 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 29 H 0.06 0.65 8.12 -51.92 -0.42 0.22 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 36 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.04 0.90 6.44 -51.93 -0.33 0.57 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.11 2.19 8.00 -51.93 -0.42 1.77 16 41 H 0.10 1.67 7.31 -51.93 -0.38 1.29 16 42 H 0.39 7.22 6.20 45.56 0.28 7.50 16 43 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -27.64 382.02 -9.71 -37.35 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.19 Total: 10.09 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.37 Total: -1.81 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.95 Total: -43.83 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.93 Total: -22.85 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.64 -9.71 -37.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448801880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.589 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds