Wall clock time and date at job start Tue Mar 31 2020 04:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00215 * 2 1 4 4 C 1.46898 * 111.00282 * 123.95492 * 2 1 3 5 5 C 1.52997 * 109.47235 * 169.99761 * 4 2 1 6 6 C 1.53006 * 109.46977 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.46992 * 179.97438 * 6 5 4 8 8 C 1.46490 * 120.00322 * 269.99874 * 7 6 5 9 9 C 1.50700 * 109.47314 * 270.00006 * 8 7 6 10 10 H 1.07993 * 120.00043 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00347 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00205 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47277 * 89.99912 * 13 11 9 15 15 H 1.48500 * 109.47245 * 210.00409 * 13 11 9 16 16 H 1.48507 * 109.46654 * 330.00315 * 13 11 9 17 17 C 1.34780 * 119.99566 * 90.00440 * 7 6 5 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 7 6 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 7 6 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 7 21 21 O 1.42903 * 112.85050 * 53.80347 * 20 19 17 22 22 C 1.53784 * 113.61716 * 282.49897 * 20 19 17 23 23 C 1.53782 * 87.08225 * 220.01852 * 22 20 19 24 24 C 1.53778 * 87.08131 * 25.42819 * 23 22 20 25 25 H 1.09001 * 109.47164 * 296.04620 * 1 2 3 26 26 H 1.09005 * 109.47698 * 56.04210 * 1 2 3 27 27 H 1.08998 * 109.47621 * 176.05008 * 1 2 3 28 28 H 1.08995 * 109.47242 * 183.95720 * 3 2 1 29 29 H 1.09007 * 109.46977 * 303.95816 * 3 2 1 30 30 H 1.08999 * 109.46953 * 63.95275 * 3 2 1 31 31 H 1.08998 * 109.46968 * 49.99284 * 4 2 1 32 32 H 1.09000 * 109.46836 * 290.00265 * 4 2 1 33 33 H 1.09000 * 109.47241 * 60.00328 * 5 4 2 34 34 H 1.09002 * 109.47129 * 299.99861 * 5 4 2 35 35 H 1.09000 * 109.46856 * 60.00106 * 6 5 4 36 36 H 1.09000 * 109.46976 * 300.00431 * 6 5 4 37 37 H 1.09006 * 109.47028 * 30.00444 * 8 7 6 38 38 H 1.09002 * 109.47109 * 150.00022 * 8 7 6 39 39 H 0.96998 * 120.00161 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.47060 * 299.99722 * 19 17 7 41 41 H 1.09001 * 109.47380 * 59.99809 * 19 17 7 42 42 H 0.96705 * 113.99923 * 309.66161 * 21 20 19 43 43 H 1.09002 * 113.61067 * 334.56569 * 22 20 19 44 44 H 1.08997 * 113.61870 * 105.46505 * 22 20 19 45 45 H 1.08997 * 113.61130 * 270.87983 * 23 22 20 46 46 H 1.09003 * 113.69222 * 139.99145 * 23 22 20 47 47 H 1.08994 * 113.61671 * 220.01906 * 24 23 22 48 48 H 1.09004 * 113.69260 * 89.13079 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 6 4.0528 -1.7526 2.1554 7 7 5.4976 -1.9345 1.9949 8 6 6.0138 -3.1062 1.2831 9 6 6.2356 -4.2308 2.2613 10 1 6.0138 -4.0873 3.3084 11 6 6.7207 -5.4433 1.8193 12 7 6.9904 -5.6183 0.5440 13 14 6.9951 -6.8378 3.0317 14 1 5.7581 -7.6526 3.1372 15 1 8.1125 -7.6933 2.5577 16 1 7.3327 -6.2757 4.3642 17 6 6.3518 -1.0238 2.5023 18 8 5.9245 -0.0536 3.0913 19 6 7.8380 -1.2105 2.3367 20 6 8.5754 -0.0448 2.9986 21 8 8.1959 0.1491 4.3626 22 6 8.5614 1.2467 2.1638 23 6 10.0229 1.4494 2.5971 24 6 10.0975 -0.0755 2.7812 25 1 -0.3633 0.4512 0.9233 26 1 -0.3635 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0827 1.3432 -0.0709 29 1 1.5897 1.9164 -0.8525 30 1 1.7044 1.8723 0.9233 31 1 1.5089 -1.7406 1.1756 32 1 1.7975 -0.2248 2.0627 33 1 3.9909 0.0193 0.9322 34 1 3.7023 -1.4966 0.0450 35 1 3.5664 -2.7273 2.1939 36 1 3.8549 -1.2110 3.0804 37 1 5.2932 -3.4187 0.5273 38 1 6.9581 -2.8519 0.8016 39 1 7.3320 -6.4713 0.2331 40 1 8.1412 -2.1463 2.8064 41 1 8.0845 -1.2402 1.2753 42 1 7.2400 0.1928 4.5025 43 1 8.4431 1.0738 1.0941 44 1 7.8824 2.0078 2.5482 45 1 10.1291 2.0072 3.5275 46 1 10.6673 1.8253 1.8024 47 1 10.6585 -0.3818 3.6641 48 1 10.3993 -0.6111 1.8811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448801880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:25 Heat of formation + Delta-G solvation = -87.144569 kcal Electronic energy + Delta-G solvation = -25531.101596 eV Core-core repulsion = 22006.806417 eV Total energy + Delta-G solvation = -3524.295179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45209 -39.78265 -38.59676 -36.89135 -35.36611 -34.78292 -33.23480 -31.01020 -29.25012 -28.50623 -27.13746 -26.61388 -24.99943 -24.50241 -23.25383 -21.79944 -20.54079 -20.02734 -18.61553 -18.07812 -17.53733 -17.00316 -16.59454 -16.55345 -16.26972 -16.20536 -15.83483 -15.58065 -15.48034 -14.89570 -14.51959 -14.42412 -13.99323 -13.71856 -13.45626 -13.31357 -13.24197 -13.14662 -12.94166 -12.88760 -12.68222 -12.59975 -12.46247 -12.39500 -12.36720 -12.08611 -11.98904 -11.73516 -11.70530 -11.53577 -11.33453 -10.67099 -10.54867 -10.49742 -9.50123 -9.33522 -8.21378 -6.35806 1.40744 1.43529 1.52248 1.68841 2.23775 2.43098 3.02861 3.09297 3.19631 3.54968 3.69262 3.86002 3.88449 3.95538 4.08797 4.17141 4.22202 4.39734 4.44223 4.46809 4.50001 4.58875 4.61440 4.65523 4.73924 4.78869 4.80630 4.83178 4.86375 4.93727 4.98195 5.00265 5.06804 5.12048 5.15057 5.18349 5.28557 5.36973 5.47307 5.64108 5.80824 6.02988 6.04627 6.10358 6.50320 6.77204 6.81866 7.26916 7.39209 8.84194 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005886 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.326132 B = 4756.156243 C = 7619.386588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.024 3.976 4 C 0.066 3.934 5 C -0.112 4.112 6 C 0.120 3.880 7 N -0.594 5.594 8 C 0.253 3.747 9 C -0.547 4.547 10 H 0.050 0.950 11 C 0.025 3.975 12 N -0.917 5.917 13 Si 0.953 3.047 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.273 1.273 17 C 0.517 3.483 18 O -0.587 6.587 19 C -0.150 4.150 20 C 0.115 3.885 21 O -0.564 6.564 22 C -0.158 4.158 23 C -0.122 4.122 24 C -0.126 4.126 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.032 0.968 39 H 0.268 0.732 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.384 0.616 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 11.400 -0.865 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.125 4.125 4 C -0.063 4.063 5 C -0.151 4.151 6 C -0.004 4.004 7 N -0.323 5.323 8 C 0.132 3.868 9 C -0.586 4.586 10 H 0.069 0.931 11 C -0.176 4.176 12 N -0.556 5.556 13 Si 0.779 3.221 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.198 1.198 17 C 0.308 3.692 18 O -0.472 6.472 19 C -0.190 4.190 20 C 0.073 3.927 21 O -0.376 6.376 22 C -0.195 4.195 23 C -0.159 4.159 24 C -0.163 4.163 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.238 0.762 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.254 11.494 -1.061 11.993 hybrid contribution -0.835 -0.825 1.105 1.613 sum -4.089 10.669 0.044 11.426 Atomic orbital electron populations 1.22427 0.85913 1.02866 1.01093 1.61956 1.09171 1.14459 1.43265 1.22423 1.00654 0.88445 1.00932 1.21961 0.94220 0.98673 0.91423 1.21737 0.95431 0.99751 0.98166 1.21321 0.80240 1.00367 0.98447 1.48214 1.06391 1.23271 1.54380 1.19092 0.94611 0.81623 0.91455 1.21639 1.44497 0.97760 0.94665 0.93133 1.25591 0.94736 1.00566 0.96663 1.69998 1.44709 1.25895 1.15036 0.85624 0.78017 0.79231 0.79236 1.20018 1.20482 1.19809 1.20802 0.89477 0.81458 0.77501 1.90411 1.79833 1.31544 1.45392 1.22239 0.91412 1.01432 1.03905 1.22112 0.95631 0.92759 0.82152 1.86253 1.30831 1.95305 1.25202 1.23536 0.98121 0.97643 1.00229 1.22688 0.95822 0.95470 1.01956 1.23128 0.92280 0.97957 1.02964 0.95276 0.90209 0.90941 0.92295 0.90039 0.95511 0.90053 0.94522 0.92806 0.92335 0.90664 0.91143 0.96043 0.95017 0.92253 0.89100 0.87424 0.76162 0.89098 0.92120 0.90382 0.89150 0.90960 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.57 127.69 1.22 1.68 16 2 N -0.56 -13.75 5.02 -948.86 -4.76 -18.51 16 3 C 0.02 0.52 9.32 127.69 1.19 1.71 16 4 C 0.07 1.72 4.96 86.30 0.43 2.14 16 5 C -0.11 -3.52 5.46 30.60 0.17 -3.35 16 6 C 0.12 4.27 5.41 86.38 0.47 4.74 16 7 N -0.59 -24.21 2.46 -826.16 -2.03 -26.24 16 8 C 0.25 11.79 4.96 85.63 0.43 12.21 16 9 C -0.55 -28.00 9.28 25.60 0.24 -27.76 16 10 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 11 C 0.03 1.30 5.46 84.65 0.46 1.77 16 12 N -0.92 -49.64 13.29 21.45 0.28 -49.36 16 13 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.52 20.53 7.43 87.66 0.65 21.18 16 18 O -0.59 -23.91 13.17 15.91 0.21 -23.70 16 19 C -0.15 -5.42 3.89 29.85 0.12 -5.31 16 20 C 0.11 3.74 1.10 -10.27 -0.01 3.73 16 21 O -0.56 -20.68 13.39 -130.04 -1.74 -22.42 16 22 C -0.16 -4.45 7.16 31.12 0.22 -4.22 16 23 C -0.12 -2.90 8.02 31.12 0.25 -2.65 16 24 C -0.13 -3.35 7.47 31.12 0.23 -3.12 16 25 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 1.26 8.12 -2.38 -0.02 1.24 16 27 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 28 H 0.06 1.45 6.47 -2.39 -0.02 1.44 16 29 H 0.08 1.50 8.12 -2.38 -0.02 1.48 16 30 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 2.02 8.06 -2.39 -0.02 2.00 16 32 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.05 1.78 6.55 -2.39 -0.02 1.77 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.70 8.07 -2.39 -0.02 2.68 16 36 H 0.07 2.51 7.42 -2.39 -0.02 2.49 16 37 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 38 H 0.03 1.52 6.44 -2.39 -0.02 1.50 16 39 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 40 H 0.09 3.65 8.00 -2.39 -0.02 3.63 16 41 H 0.11 3.63 7.31 -2.39 -0.02 3.61 16 42 H 0.38 14.47 6.20 -74.05 -0.46 14.01 16 43 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 47 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.11 2.54 8.10 -2.38 -0.02 2.52 16 Total: -1.00 -57.86 382.02 0.51 -57.35 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.46 Total: 36.62 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.06 Total: 2.76 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -6.51 Total: -94.10 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.53 Total: -46.12 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -57.86 0.51 -57.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448801880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.790 kcal (2) G-P(sol) polarization free energy of solvation -57.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds