Wall clock time and date at job start Tue Mar 31 2020 03:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00110 * 2 1 4 4 C 1.50701 * 109.47348 * 270.00549 * 3 2 1 5 5 H 1.07996 * 120.00355 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99900 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00525 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47298 * 59.99916 * 8 6 4 10 10 H 1.48499 * 109.47547 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47191 * 300.00054 * 8 6 4 12 12 C 1.34778 * 120.00101 * 180.02562 * 2 1 3 13 13 O 1.21274 * 120.00295 * 179.97438 * 12 2 1 14 14 C 1.50705 * 119.99599 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.46784 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.46923 * 180.02562 * 15 14 12 17 17 C 1.46908 * 111.00022 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.05392 * 45.13858 * 17 16 15 19 19 C 1.54266 * 110.02867 * 283.72528 * 17 16 15 20 20 C 1.54899 * 104.18907 * 217.10463 * 19 17 16 21 21 C 1.54881 * 102.74943 * 37.94475 * 20 19 17 22 22 C 1.53875 * 110.03405 * 166.55652 * 17 16 15 23 23 C 1.53005 * 110.03043 * 0.02562 * 22 17 16 24 24 C 1.53002 * 110.03087 * 238.57251 * 22 17 16 25 25 O 1.42900 * 109.46866 * 181.37787 * 24 22 17 26 26 H 1.08999 * 109.46996 * 269.99837 * 1 2 3 27 27 H 1.09005 * 109.47510 * 29.99429 * 1 2 3 28 28 H 1.08994 * 109.47620 * 149.99449 * 1 2 3 29 29 H 1.09000 * 109.47338 * 30.00153 * 3 2 1 30 30 H 1.08997 * 109.47169 * 150.00151 * 3 2 1 31 31 H 0.96996 * 120.00414 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46809 * 60.00573 * 14 12 2 33 33 H 1.08992 * 109.47545 * 300.00642 * 14 12 2 34 34 H 1.09002 * 109.47080 * 60.00186 * 15 14 12 35 35 H 1.08996 * 109.47291 * 300.00009 * 15 14 12 36 36 H 1.00897 * 111.00223 * 303.95586 * 16 15 14 37 37 H 1.08999 * 110.48715 * 98.43168 * 19 17 16 38 38 H 1.08994 * 110.60079 * 335.83038 * 19 17 16 39 39 H 1.09000 * 110.75673 * 279.62473 * 20 19 17 40 40 H 1.08998 * 110.74985 * 156.25705 * 20 19 17 41 41 H 1.08994 * 110.49016 * 80.73817 * 21 20 19 42 42 H 1.09010 * 110.48375 * 203.37888 * 21 20 19 43 43 H 1.08995 * 109.46979 * 171.36023 * 23 22 17 44 44 H 1.09002 * 109.47319 * 291.35688 * 23 22 17 45 45 H 1.09000 * 109.47253 * 51.35645 * 23 22 17 46 46 H 1.09003 * 109.46812 * 301.37655 * 24 22 17 47 47 H 1.08991 * 109.47285 * 61.37839 * 24 22 17 48 48 H 0.96701 * 114.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5543 3.6176 -0.6731 8 14 3.4387 3.4165 -3.4338 9 1 2.1413 3.5945 -4.1341 10 1 4.1811 4.7026 -3.4338 11 1 4.2410 2.3813 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0018 16 7 1.6450 -4.9074 -0.0024 17 6 2.5695 -6.0491 -0.0031 18 1 3.3660 -5.8854 0.7227 19 6 3.1692 -6.2426 -1.4112 20 6 3.2653 -7.7799 -1.5750 21 6 1.9723 -8.2788 -0.8836 22 6 1.8085 -7.3437 0.3324 23 6 0.3271 -7.0367 0.5610 24 6 2.4082 -7.9959 1.5798 25 8 1.7139 -9.2127 1.8616 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5138 30 1 3.1499 1.1383 0.5138 31 1 4.0311 4.4435 -0.8503 32 1 0.7584 -2.5298 -0.8904 33 1 0.7589 -2.5302 0.8895 34 1 3.0069 -3.5779 0.8877 35 1 3.0055 -3.5771 -0.8922 36 1 1.0089 -4.9580 0.7791 37 1 4.1591 -5.7901 -1.4697 38 1 2.5113 -5.8186 -2.1697 39 1 4.1488 -8.1679 -1.0681 40 1 3.2708 -8.0563 -2.6293 41 1 1.1193 -8.1839 -1.5555 42 1 2.0887 -9.3123 -0.5571 43 1 -0.2286 -7.9705 0.6455 44 1 0.2128 -6.4614 1.4798 45 1 -0.0582 -6.4593 -0.2795 46 1 3.4626 -8.2111 1.4060 47 1 2.3107 -7.3173 2.4271 48 1 2.0420 -9.6813 2.6413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493472225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:43 Heat of formation + Delta-G solvation = -120.812122 kcal Electronic energy + Delta-G solvation = -24823.227025 eV Core-core repulsion = 21297.471911 eV Total energy + Delta-G solvation = -3525.755114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90505 -40.46281 -37.38731 -36.63198 -35.73891 -34.72265 -32.62503 -31.69704 -29.65554 -27.93287 -27.40415 -27.11550 -25.43186 -24.53500 -23.21297 -21.31364 -20.07426 -19.33204 -18.70761 -18.19199 -17.85054 -17.15623 -17.04180 -16.66099 -16.39401 -16.15901 -15.86304 -15.28882 -15.00268 -14.74542 -14.53564 -14.31471 -13.94620 -13.67143 -13.46484 -13.41812 -13.29429 -13.10525 -12.97926 -12.75937 -12.74227 -12.51996 -12.24551 -12.19662 -12.02230 -11.83890 -11.74975 -11.71454 -11.63468 -11.45894 -11.28321 -10.80612 -10.65297 -10.59816 -9.43388 -9.39708 -8.23343 -6.38558 1.35763 1.40166 1.47538 1.85405 2.29905 2.43262 3.04587 3.06379 3.38750 3.59542 3.77398 3.91476 3.97752 4.07806 4.20084 4.33087 4.35936 4.42156 4.43248 4.48315 4.54452 4.63678 4.65442 4.73397 4.76414 4.86687 4.90788 4.96593 4.98355 5.04694 5.07482 5.10357 5.14913 5.20710 5.22379 5.30904 5.37243 5.48263 5.55530 5.56273 5.84190 6.03779 6.05404 6.48231 6.68868 6.80264 6.91803 7.27455 7.49473 8.83538 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.002720 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.261877 B =10290.288795 C =10785.771598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.117 4.117 15 C 0.083 3.917 16 N -0.672 5.672 17 C 0.092 3.908 18 H 0.038 0.962 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.061 4.061 23 C -0.129 4.129 24 C 0.088 3.912 25 O -0.581 6.581 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.023 0.977 30 H -0.004 1.004 31 H 0.268 0.732 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.020 0.980 35 H 0.055 0.945 36 H 0.351 0.649 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.046 0.954 48 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 -25.365 3.743 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.157 4.157 15 C -0.046 4.046 16 N -0.306 5.306 17 C -0.018 4.018 18 H 0.056 0.944 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.140 4.140 22 C -0.061 4.061 23 C -0.186 4.186 24 C 0.010 3.990 25 O -0.389 6.389 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.041 0.959 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.172 0.828 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.968 -24.995 2.609 26.363 hybrid contribution 1.368 0.877 0.765 1.796 sum -6.599 -24.118 3.374 25.231 Atomic orbital electron populations 1.21946 0.77731 1.04077 1.02631 1.48207 1.08506 1.06378 1.71192 1.18744 0.91071 0.80596 0.95988 1.21685 1.36904 1.06577 0.93061 0.92896 1.25886 0.94873 0.96419 1.02091 1.70045 1.38907 1.14827 1.33147 0.85461 0.78900 0.77357 0.79064 1.18363 1.20253 1.20341 1.21420 0.87803 0.86799 0.75765 1.90630 1.16846 1.88294 1.52699 1.21525 0.98864 0.88853 1.06410 1.21456 0.94632 0.88327 1.00216 1.60785 1.19403 1.00055 1.50393 1.22105 0.93050 0.89704 0.96948 0.94438 1.22417 0.99846 0.96911 0.96434 1.22472 0.98074 0.94218 1.01096 1.22313 0.97622 0.98628 0.95417 1.21227 0.96598 0.93335 0.94955 1.21684 0.93798 1.01285 1.01880 1.22210 0.94686 0.86025 0.96052 1.86421 1.62534 1.37363 1.52594 0.91032 0.91777 0.88531 0.95874 0.98597 0.92365 0.86625 0.86395 0.96141 0.92589 0.82756 0.92907 0.91190 0.91319 0.90780 0.91521 0.91044 0.92670 0.92602 0.91138 0.93338 0.93557 0.75613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.61 16 2 N -0.61 -26.21 2.86 -851.15 -2.43 -28.64 16 3 C 0.26 14.21 5.16 85.63 0.44 14.65 16 4 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 8 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.49 20.59 7.67 87.66 0.67 21.26 16 13 O -0.60 -31.80 15.56 -3.01 -0.05 -31.85 16 14 C -0.12 -3.15 4.51 29.85 0.13 -3.02 16 15 C 0.08 2.29 4.80 86.30 0.41 2.71 16 16 N -0.67 -13.77 5.16 -487.82 -2.52 -16.29 16 17 C 0.09 1.80 2.86 45.64 0.13 1.94 16 18 H 0.04 0.79 7.53 -2.39 -0.02 0.78 16 19 C -0.12 -2.43 5.91 31.67 0.19 -2.24 16 20 C -0.12 -1.99 6.91 31.89 0.22 -1.77 16 21 C -0.10 -1.67 5.81 31.66 0.18 -1.49 16 22 C -0.06 -0.99 0.75 -51.46 -0.04 -1.03 16 23 C -0.13 -2.02 6.85 71.98 0.49 -1.53 16 24 C 0.09 1.26 5.66 71.98 0.41 1.66 16 25 O -0.58 -7.90 12.41 -148.98 -1.85 -9.75 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 2.01 8.07 -2.38 -0.02 1.99 16 28 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 29 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 30 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.12 2.74 7.40 -2.39 -0.02 2.72 16 33 H 0.12 2.39 8.11 -2.39 -0.02 2.37 16 34 H 0.02 0.62 8.06 -2.39 -0.02 0.60 16 35 H 0.06 1.83 7.66 -2.39 -0.02 1.81 16 36 H 0.35 5.97 6.30 -89.70 -0.57 5.41 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.59 8.06 -2.39 -0.02 1.57 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.12 7.85 -2.39 -0.02 1.10 16 42 H 0.07 1.18 7.29 -2.38 -0.02 1.16 16 43 H 0.05 0.91 7.94 -2.39 -0.02 0.90 16 44 H 0.06 0.78 7.17 -2.39 -0.02 0.76 16 45 H 0.07 1.17 7.37 -2.39 -0.02 1.15 16 46 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.39 2.03 9.12 -74.06 -0.68 1.36 16 Total: -1.00 -76.60 376.95 0.42 -76.18 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.30 Total: 15.80 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.26 Total: 3.85 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -4.67 Total: -101.76 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.90 Total: -41.60 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.60 0.42 -76.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493472225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.636 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds