Wall clock time and date at job start Tue Mar 31 2020 04:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47090 * 2 1 4 4 C 1.46498 * 120.00090 * 269.99520 * 3 2 1 5 5 C 1.50697 * 109.47246 * 270.00243 * 4 3 2 6 6 H 1.07998 * 120.00307 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99805 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00480 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99896 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46791 * 60.00393 * 9 7 5 11 11 H 1.48499 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47283 * 300.00154 * 9 7 5 13 13 C 1.34777 * 120.00269 * 89.99863 * 3 2 1 14 14 O 1.21277 * 120.00625 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99705 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47085 * 179.97438 * 15 13 3 17 17 C 1.46901 * 110.99974 * 179.97438 * 16 15 13 18 18 H 1.08997 * 110.01344 * 46.61251 * 17 16 15 19 19 C 1.54268 * 110.03220 * 285.22467 * 17 16 15 20 20 C 1.54892 * 104.19145 * 217.05657 * 19 17 16 21 21 C 1.54895 * 102.75019 * 37.94014 * 20 19 17 22 22 C 1.53870 * 110.07157 * 168.02735 * 17 16 15 23 23 C 1.52997 * 110.03307 * 238.59351 * 22 17 16 24 24 C 1.53007 * 110.03407 * 0.02619 * 22 17 16 25 25 O 1.42903 * 109.46899 * 174.94091 * 24 22 17 26 26 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.08986 * 109.47064 * 300.00024 * 1 2 3 28 28 H 1.09006 * 109.46825 * 60.00463 * 1 2 3 29 29 H 1.09003 * 109.47324 * 239.99907 * 2 1 3 30 30 H 1.09003 * 109.46912 * 120.00301 * 2 1 3 31 31 H 1.08999 * 109.46948 * 30.00480 * 4 3 2 32 32 H 1.09005 * 109.47117 * 150.00189 * 4 3 2 33 33 H 0.97001 * 120.00592 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46675 * 59.99956 * 15 13 3 35 35 H 1.08993 * 109.47143 * 300.00259 * 15 13 3 36 36 H 1.00899 * 110.99896 * 303.95831 * 16 15 13 37 37 H 1.08998 * 110.48548 * 335.73005 * 19 17 16 38 38 H 1.08998 * 110.48828 * 98.24485 * 19 17 16 39 39 H 1.08993 * 110.75704 * 156.25722 * 20 19 17 40 40 H 1.09004 * 110.75254 * 279.44242 * 20 19 17 41 41 H 1.09000 * 110.48537 * 80.73939 * 21 20 19 42 42 H 1.08999 * 110.48389 * 203.24886 * 21 20 19 43 43 H 1.08995 * 109.47229 * 60.00174 * 23 22 17 44 44 H 1.09000 * 109.47199 * 180.02562 * 23 22 17 45 45 H 1.09000 * 109.47157 * 300.00236 * 23 22 17 46 46 H 1.09001 * 109.46768 * 294.94307 * 24 22 17 47 47 H 1.08997 * 109.46753 * 54.94027 * 24 22 17 48 48 H 0.96700 * 113.99633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9137 2.0966 -3.4167 10 1 6.1418 0.6398 -3.5935 11 1 6.1608 2.7955 -4.7034 12 1 6.8408 2.6209 -2.3820 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3101 2.2061 3.5889 17 6 2.0755 1.5462 4.8802 18 1 2.5107 0.5469 4.8730 19 6 0.5613 1.4611 5.1629 20 6 0.4464 1.6942 6.6899 21 6 1.5264 2.7728 6.9533 22 6 2.6891 2.3801 6.0185 23 6 3.7179 1.5455 6.7839 24 6 3.3514 3.6366 5.4496 25 8 3.8131 4.4593 6.5230 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6751 3.5155 -4.4444 34 1 2.6211 0.4186 2.5302 35 1 0.9432 1.0125 2.5298 36 1 3.2586 2.5435 3.5218 37 1 0.0271 2.2388 4.6171 38 1 0.1780 0.4765 4.8953 39 1 -0.5440 2.0676 6.9501 40 1 0.6689 0.7787 7.2381 41 1 1.1480 3.7622 6.6966 42 1 1.8461 2.7460 7.9950 43 1 4.5092 1.2309 6.1035 44 1 4.1462 2.1443 7.5877 45 1 3.2310 0.6664 7.2060 46 1 4.1955 3.3500 4.8223 47 1 2.6268 4.1906 4.8528 48 1 4.2445 5.2756 6.2354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493519867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:44 Heat of formation + Delta-G solvation = -92.474465 kcal Electronic energy + Delta-G solvation = -25561.994928 eV Core-core repulsion = 22037.468627 eV Total energy + Delta-G solvation = -3524.526301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97910 -38.85459 -36.25543 -35.31008 -34.16483 -32.75955 -31.60966 -30.09026 -28.65265 -27.18168 -26.69592 -25.00522 -23.79264 -23.00752 -22.23937 -20.58507 -18.84893 -18.18679 -17.38966 -16.56229 -16.38217 -15.85534 -15.57643 -15.32628 -15.16616 -14.52787 -14.40570 -14.08816 -13.60820 -13.45884 -13.31394 -13.28560 -12.74651 -12.47480 -12.43743 -12.19554 -12.00792 -11.93879 -11.48899 -11.36015 -11.17762 -11.12407 -10.97819 -10.91041 -10.74163 -10.70659 -10.64712 -10.51045 -10.43015 -10.13034 -9.91933 -9.64748 -8.88619 -8.43282 -8.30375 -7.63898 -6.04102 -4.09044 3.30760 3.35427 3.37146 3.47282 3.73187 4.06143 4.32594 4.42962 4.45478 4.59737 4.89556 5.10711 5.15744 5.20479 5.23577 5.28592 5.30288 5.31326 5.38149 5.47892 5.53906 5.56661 5.60866 5.66682 5.74089 5.79123 5.82362 5.89038 5.93049 5.96928 6.00367 6.05042 6.16395 6.21631 6.23607 6.32521 6.48898 6.93357 7.15594 7.40414 7.47052 7.57144 7.61743 7.92526 8.24241 8.45703 8.90688 9.13533 9.56064 11.03833 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.003700 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.272880 B = 7564.979859 C = 8537.175827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.530 6.530 15 C 0.040 3.960 16 N -0.668 5.668 17 C 0.092 3.908 18 H 0.046 0.954 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.100 4.100 22 C -0.060 4.060 23 C -0.137 4.137 24 C 0.086 3.914 25 O -0.576 6.576 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.351 0.649 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.041 0.959 47 H 0.068 0.932 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -6.064 19.151 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.407 6.407 15 C -0.093 4.093 16 N -0.303 5.303 17 C -0.018 4.018 18 H 0.064 0.936 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.137 4.137 22 C -0.060 4.060 23 C -0.194 4.194 24 C 0.008 3.992 25 O -0.382 6.382 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.173 0.827 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.577 -5.519 19.276 20.812 hybrid contribution 1.969 -0.505 -0.901 2.223 sum -3.608 -6.024 18.375 19.671 Atomic orbital electron populations 1.22221 0.96793 1.01335 1.02386 1.21400 0.93532 0.84324 1.02509 1.48246 1.64015 1.13175 1.07722 1.19238 0.96115 0.93659 0.78138 1.21397 0.96973 1.31947 1.06239 0.92655 1.24930 0.97785 0.94935 0.96403 1.69922 1.35712 1.33380 1.14328 0.86575 0.84870 0.78215 0.77836 1.20294 1.21153 1.20236 1.20192 0.78831 0.87059 0.84893 1.90661 1.45261 1.17778 1.86976 1.21938 1.02375 0.94364 0.90590 1.60447 1.32419 1.37558 0.99907 1.22255 0.96220 0.95136 0.88191 0.93595 1.22461 0.95165 1.01838 0.96029 1.22484 0.99036 0.98876 0.95943 1.22269 0.93994 0.98812 0.98665 1.21229 0.95682 0.94138 0.94980 1.21870 0.98004 0.99231 1.00325 1.22231 0.97439 0.91400 0.88117 1.86393 1.80140 1.36584 1.35040 0.92252 0.93021 0.92020 0.90018 0.91971 0.95101 0.93912 0.92669 0.93103 0.88730 0.82734 0.90120 0.92017 0.91541 0.91816 0.91225 0.91665 0.93067 0.91695 0.92734 0.94060 0.91351 0.77566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.52 2.46 -175.06 -0.43 -12.95 16 4 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.50 10.38 7.71 -10.98 -0.08 10.29 16 14 O -0.53 -13.25 15.78 5.56 0.09 -13.16 16 15 C 0.04 0.59 4.54 -4.97 -0.02 0.57 16 16 N -0.67 -9.46 4.84 -106.81 -0.52 -9.97 16 17 C 0.09 1.04 2.86 -66.60 -0.19 0.85 16 18 H 0.05 0.50 7.56 -51.93 -0.39 0.11 16 19 C -0.12 -1.20 5.83 -25.07 -0.15 -1.35 16 20 C -0.13 -1.13 6.91 -24.73 -0.17 -1.30 16 21 C -0.10 -1.02 5.53 -25.07 -0.14 -1.16 16 22 C -0.06 -0.65 0.75 -153.39 -0.12 -0.76 16 23 C -0.14 -1.37 8.05 37.16 0.30 -1.07 16 24 C 0.09 1.01 4.53 37.16 0.17 1.18 16 25 O -0.58 -6.38 12.76 -35.23 -0.45 -6.83 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.66 7.22 -51.94 -0.37 0.28 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.05 0.69 7.37 -51.93 -0.38 0.30 16 35 H 0.09 1.25 6.68 -51.93 -0.35 0.90 16 36 H 0.35 5.30 6.01 -39.29 -0.24 5.07 16 37 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 42 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.68 7.79 -51.93 -0.40 0.27 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.50 6.96 -51.93 -0.36 0.14 16 47 H 0.07 0.91 7.58 -51.93 -0.39 0.52 16 48 H 0.38 2.82 9.12 45.56 0.42 3.24 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -33.03 376.02 -8.19 -41.22 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.77 Total: 5.18 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.49 Total: -0.08 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.21 Total: -48.81 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.36 Total: -19.99 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.03 -8.19 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493519867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.258 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds