Wall clock time and date at job start Tue Mar 31 2020 04:57:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46903 * 110.99660 * 2 1
4 4 C 1.53245 * 109.33920 * 172.74662 * 3 2 1
5 5 N 1.47084 * 108.52086 * 53.82742 * 4 3 2
6 6 C 1.34776 * 120.87948 * 128.79747 * 5 4 3
7 7 O 1.21585 * 119.99712 * 186.00047 * 6 5 4
8 8 N 1.34779 * 120.00072 * 5.99288 * 6 5 4
9 9 C 1.46493 * 119.99938 * 185.17002 * 8 6 5
10 10 C 1.53006 * 109.46992 * 180.02562 * 9 8 6
11 11 C 1.53006 * 109.46772 * 299.99478 * 10 9 8
12 12 C 1.52996 * 109.47128 * 59.99886 * 10 9 8
13 13 C 1.50705 * 109.46947 * 179.97438 * 10 9 8
14 14 H 1.07996 * 120.00231 * 0.02562 * 13 10 9
15 15 C 1.37880 * 119.99672 * 179.97438 * 13 10 9
16 16 N 1.31513 * 120.00050 * 0.02562 * 15 13 10
17 17 Si 1.86795 * 119.99568 * 180.02562 * 15 13 10
18 18 H 1.48505 * 109.47570 * 60.00189 * 17 15 13
19 19 H 1.48502 * 109.47165 * 179.97438 * 17 15 13
20 20 H 1.48504 * 109.47524 * 300.00095 * 17 15 13
21 21 C 1.47074 * 118.23470 * 308.81604 * 5 4 3
22 22 H 1.08996 * 109.63302 * 291.47083 * 21 5 4
23 23 C 1.53005 * 109.62425 * 171.09140 * 21 5 4
24 24 N 1.46895 * 109.47475 * 68.45626 * 23 21 5
25 25 C 1.46900 * 111.00153 * 235.69760 * 2 1 3
26 26 H 1.08999 * 109.46786 * 63.95625 * 1 2 3
27 27 H 1.08995 * 109.47021 * 183.95303 * 1 2 3
28 28 H 1.09004 * 109.47179 * 303.95384 * 1 2 3
29 29 H 1.08997 * 109.49825 * 52.78976 * 3 2 1
30 30 H 1.08995 * 109.49651 * 292.70012 * 3 2 1
31 31 H 1.09004 * 109.62728 * 294.12224 * 4 3 2
32 32 H 1.08995 * 109.79168 * 173.63331 * 4 3 2
33 33 H 0.97006 * 119.99499 * 5.17283 * 8 6 5
34 34 H 1.08998 * 109.47305 * 299.99731 * 9 8 6
35 35 H 1.08997 * 109.47214 * 60.00070 * 9 8 6
36 36 H 1.09003 * 109.46616 * 60.00526 * 11 10 9
37 37 H 1.08996 * 109.46646 * 180.02562 * 11 10 9
38 38 H 1.08997 * 109.47309 * 300.00374 * 11 10 9
39 39 H 1.08997 * 109.47195 * 60.00161 * 12 10 9
40 40 H 1.09003 * 109.46471 * 180.02562 * 12 10 9
41 41 H 1.08996 * 109.47215 * 299.99945 * 12 10 9
42 42 H 0.97005 * 119.99577 * 180.02562 * 16 15 13
43 43 H 1.08998 * 109.47298 * 188.45869 * 23 21 5
44 44 H 1.09008 * 109.46959 * 308.45352 * 23 21 5
45 45 H 1.00902 * 110.99735 * 56.04648 * 24 23 21
46 46 H 1.00901 * 111.00136 * 180.02562 * 24 23 21
47 47 H 1.09006 * 109.49040 * 67.29606 * 25 2 1
48 48 H 1.08993 * 109.49338 * 307.21721 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 3.5164 1.3313 0.1826
5 7 4.0870 0.4461 -0.8442
6 6 5.1053 0.8585 -1.6248
7 8 5.4927 0.1574 -2.5394
8 7 5.6942 2.0482 -1.3915
9 6 6.7234 2.5480 -2.3064
10 6 7.2247 3.9079 -1.8161
11 6 6.0576 4.8963 -1.7727
12 6 7.8182 3.7574 -0.4140
13 6 8.2840 4.4217 -2.7569
14 1 8.5706 3.8371 -3.6186
15 6 8.8864 5.6387 -2.5182
16 7 8.5371 6.3509 -1.4693
17 14 10.1988 6.2759 -3.6848
18 1 9.6230 6.4215 -5.0459
19 1 10.6847 7.5963 -3.2096
20 1 11.3319 5.3168 -3.7268
21 6 3.5164 -0.9009 -0.9967
22 1 3.7562 -1.5016 -0.1194
23 6 4.0944 -1.5651 -2.2480
24 7 5.5202 -1.8494 -2.0373
25 6 1.9955 -0.7729 -1.1329
26 1 -0.3633 0.4512 -0.9233
27 1 -0.3633 -1.0252 0.0708
28 1 -0.3634 0.5740 0.8525
29 1 1.5456 1.9338 0.8183
30 1 1.7555 1.8532 -0.9479
31 1 3.7562 0.9451 1.1733
32 1 3.9281 2.3343 0.0711
33 1 5.4364 2.5735 -0.6177
34 1 7.5550 1.8441 -2.3371
35 1 6.3007 2.6548 -3.3053
36 1 5.2918 4.5244 -1.0919
37 1 6.4148 5.8652 -1.4238
38 1 5.6348 5.0034 -2.7716
39 1 8.6497 3.0533 -0.4450
40 1 8.1750 4.7264 -0.0647
41 1 7.0524 3.3856 0.2667
42 1 8.9607 7.2073 -1.3016
43 1 3.5632 -2.4967 -2.4432
44 1 3.9795 -0.8958 -3.1006
45 1 5.6580 -2.4159 -1.2137
46 1 5.9254 -2.2883 -2.8505
47 1 1.7555 -0.2612 -2.0650
48 1 1.5457 -1.7656 -1.1363
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000567572762.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:57:26
Heat of formation + Delta-G solvation = 24.362014 kcal
Electronic energy + Delta-G solvation = -26273.820022 eV
Core-core repulsion = 22786.652882 eV
Total energy + Delta-G solvation = -3487.167140 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 298.211 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.31422 -38.03835 -36.43988 -34.81693 -34.18313 -32.59990 -30.83481 -30.50438
-28.52802 -25.63630 -25.57764 -25.27764 -24.51756 -24.13680 -21.82104 -21.15894
-19.32487 -18.62730 -17.54564 -15.99380 -15.76625 -15.66502 -15.29084 -15.21709
-15.00177 -14.66998 -14.55432 -14.15895 -13.73971 -13.49561 -13.25542 -12.81712
-12.61089 -12.53526 -12.24714 -12.12944 -12.01656 -11.87630 -11.35091 -11.25761
-11.22702 -11.11668 -10.95295 -10.76893 -10.66786 -10.28504 -10.12260 -9.53071
-9.22094 -8.84511 -8.71774 -8.62597 -8.44673 -8.31868 -7.93481 -7.56667
-5.95194 -4.04635 3.07989 3.34402 3.38293 3.42462 3.65185 4.00313
4.40863 4.52941 4.63508 4.82028 4.85779 5.08624 5.13216 5.20660
5.23443 5.31270 5.31506 5.38031 5.49084 5.55443 5.58863 5.64368
5.69310 5.89850 6.27416 6.35563 6.51279 6.61557 6.71717 6.73685
6.81242 6.91860 6.95347 7.05489 7.14406 7.32509 7.48250 7.55158
7.61877 7.64972 7.76848 7.83657 8.10065 8.21675 8.47839 8.72797
8.95492 9.44893 9.60581 11.06114
Molecular weight = 298.21amu
Principal moments of inertia in cm(-1)
A = 0.023756 B = 0.003774 C = 0.003417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1178.391044 B = 7418.353173 C = 8191.739841
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.542 5.542
3 C 0.041 3.959
4 C 0.117 3.883
5 N -0.633 5.633
6 C 0.691 3.309
7 O -0.538 6.538
8 N -0.741 5.741
9 C 0.156 3.844
10 C 0.056 3.944
11 C -0.127 4.127
12 C -0.127 4.127
13 C -0.503 4.503
14 H 0.056 0.944
15 C 0.066 3.934
16 N -0.887 5.887
17 Si 0.892 3.108
18 H -0.278 1.278
19 H -0.288 1.288
20 H -0.277 1.277
21 C 0.174 3.826
22 H 0.068 0.932
23 C 0.084 3.916
24 N -0.800 5.800
25 C 0.046 3.954
26 H 0.025 0.975
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.085 0.915
30 H 0.040 0.960
31 H 0.069 0.931
32 H 0.084 0.916
33 H 0.387 0.613
34 H 0.050 0.950
35 H 0.045 0.955
36 H 0.004 0.996
37 H 0.083 0.917
38 H 0.024 0.976
39 H 0.026 0.974
40 H 0.083 0.917
41 H 0.004 0.996
42 H 0.259 0.741
43 H 0.007 0.993
44 H 0.090 0.910
45 H 0.310 0.690
46 H 0.335 0.665
47 H 0.040 0.960
48 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.930 -12.391 4.643 19.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.266 5.266
3 C -0.088 4.088
4 C -0.007 4.007
5 N -0.374 5.374
6 C 0.393 3.607
7 O -0.411 6.411
8 N -0.398 5.398
9 C 0.033 3.967
10 C 0.055 3.945
11 C -0.185 4.185
12 C -0.185 4.185
13 C -0.542 4.542
14 H 0.075 0.925
15 C -0.135 4.135
16 N -0.526 5.526
17 Si 0.721 3.279
18 H -0.204 1.204
19 H -0.214 1.214
20 H -0.203 1.203
21 C 0.069 3.931
22 H 0.086 0.914
23 C -0.048 4.048
24 N -0.330 5.330
25 C -0.084 4.084
26 H 0.043 0.957
27 H 0.086 0.914
28 H 0.088 0.912
29 H 0.103 0.897
30 H 0.058 0.942
31 H 0.087 0.913
32 H 0.102 0.898
33 H 0.223 0.777
34 H 0.069 0.931
35 H 0.063 0.937
36 H 0.023 0.977
37 H 0.102 0.898
38 H 0.044 0.956
39 H 0.045 0.955
40 H 0.102 0.898
41 H 0.023 0.977
42 H 0.069 0.931
43 H 0.025 0.975
44 H 0.108 0.892
45 H 0.122 0.878
46 H 0.148 0.852
47 H 0.058 0.942
48 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -14.316 -12.135 4.484 19.295
hybrid contribution -0.085 0.085 -0.947 0.955
sum -14.400 -12.050 3.537 19.107
Atomic orbital electron populations
1.22360 0.87110 1.02193 1.00583 1.61904 1.07706 1.13809 1.43222
1.22517 0.95799 0.89240 1.01243 1.21619 0.91974 0.94834 0.92292
1.47190 1.36617 1.14756 1.38787 1.15980 0.79561 0.81950 0.83241
1.90946 1.65592 1.52384 1.32180 1.45684 1.43107 1.20127 1.30931
1.21428 0.87996 0.96375 0.90931 1.18347 0.93505 0.88704 0.93928
1.21798 0.95871 1.03177 0.97669 1.21786 0.97593 1.02260 0.96851
1.20972 1.20020 1.03717 1.09495 0.92548 1.24874 0.96745 0.96613
0.95298 1.69803 1.42533 1.13189 1.27045 0.86653 0.82124 0.77910
0.81256 1.20360 1.21408 1.20302 1.21007 0.90296 0.83374 0.98451
0.91421 1.21768 0.88433 0.96704 0.97859 1.59119 1.13990 1.52814
1.07098 1.22518 0.95388 0.98514 0.91978 0.95668 0.91361 0.91219
0.89673 0.94206 0.91273 0.89767 0.77738 0.93125 0.93664 0.97737
0.89783 0.95639 0.95512 0.89845 0.97656 0.93067 0.97494 0.89158
0.87788 0.85165 0.94182 0.90025
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 9.58 60.06 0.58 0.78 16
2 N -0.54 -5.50 4.88 -242.61 -1.18 -6.68 16
3 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16
4 C 0.12 1.42 6.48 -3.60 -0.02 1.40 16
5 N -0.63 -9.20 3.01 -170.61 -0.51 -9.71 16
6 C 0.69 12.65 8.01 -86.92 -0.70 11.95 16
7 O -0.54 -10.93 10.38 5.29 0.05 -10.88 16
8 N -0.74 -14.01 4.81 -65.23 -0.31 -14.32 16
9 C 0.16 3.45 4.51 -4.04 -0.02 3.44 16
10 C 0.06 1.33 0.50 -155.65 -0.08 1.25 16
11 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16
12 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16
13 C -0.50 -13.46 8.01 -34.44 -0.28 -13.74 16
14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16
15 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16
16 N -0.89 -23.96 9.35 55.43 0.52 -23.44 16
17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16
18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
21 C 0.17 2.18 3.23 -67.49 -0.22 1.96 16
22 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16
23 C 0.08 1.10 5.41 -3.82 -0.02 1.08 16
24 N -0.80 -11.38 6.45 -10.37 -0.07 -11.45 16
25 C 0.05 0.48 4.92 -3.70 -0.02 0.46 16
26 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16
27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
29 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16
30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
32 H 0.08 1.04 5.87 -51.93 -0.30 0.74 16
33 H 0.39 6.81 3.83 -40.82 -0.16 6.65 16
34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
35 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16
36 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16
37 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16
38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16
41 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16
42 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16
43 H 0.01 0.08 8.14 -51.93 -0.42 -0.34 16
44 H 0.09 1.45 6.58 -51.92 -0.34 1.11 16
45 H 0.31 3.88 8.98 -39.29 -0.35 3.52 16
46 H 0.34 4.53 9.08 -39.29 -0.36 4.17 16
47 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16
48 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16
LS Contribution 357.37 15.07 5.39 5.39
Total: -1.00 -29.00 357.37 -9.73 -38.73
By element:
Atomic # 1 Polarization: 19.31 SS G_CDS: -8.31 Total: 11.01 kcal
Atomic # 6 Polarization: 5.64 SS G_CDS: -0.29 Total: 5.35 kcal
Atomic # 7 Polarization: -64.05 SS G_CDS: -1.56 Total: -65.61 kcal
Atomic # 8 Polarization: -10.93 SS G_CDS: 0.05 Total: -10.88 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -29.00 -9.73 -38.73 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000567572762.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.089 kcal
(2) G-P(sol) polarization free energy of solvation -28.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.362 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds