Wall clock time and date at job start Tue Mar 31 2020 04:57:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46903 * 110.99660 * 2 1
4 4 C 1.53245 * 109.33920 * 172.74662 * 3 2 1
5 5 N 1.47084 * 108.52086 * 53.82742 * 4 3 2
6 6 C 1.34776 * 120.87948 * 128.79747 * 5 4 3
7 7 O 1.21585 * 119.99712 * 186.00047 * 6 5 4
8 8 N 1.34779 * 120.00072 * 5.99288 * 6 5 4
9 9 C 1.46493 * 119.99938 * 185.17002 * 8 6 5
10 10 C 1.53006 * 109.46992 * 180.02562 * 9 8 6
11 11 C 1.53006 * 109.46772 * 299.99478 * 10 9 8
12 12 C 1.52996 * 109.47128 * 59.99886 * 10 9 8
13 13 C 1.50705 * 109.46947 * 179.97438 * 10 9 8
14 14 H 1.07996 * 120.00231 * 0.02562 * 13 10 9
15 15 C 1.37880 * 119.99672 * 179.97438 * 13 10 9
16 16 N 1.31513 * 120.00050 * 0.02562 * 15 13 10
17 17 Si 1.86795 * 119.99568 * 180.02562 * 15 13 10
18 18 H 1.48505 * 109.47570 * 60.00189 * 17 15 13
19 19 H 1.48502 * 109.47165 * 179.97438 * 17 15 13
20 20 H 1.48504 * 109.47524 * 300.00095 * 17 15 13
21 21 C 1.47074 * 118.23470 * 308.81604 * 5 4 3
22 22 H 1.08996 * 109.63302 * 291.47083 * 21 5 4
23 23 C 1.53005 * 109.62425 * 171.09140 * 21 5 4
24 24 N 1.46895 * 109.47475 * 68.45626 * 23 21 5
25 25 C 1.46900 * 111.00153 * 235.69760 * 2 1 3
26 26 H 1.08999 * 109.46786 * 63.95625 * 1 2 3
27 27 H 1.08995 * 109.47021 * 183.95303 * 1 2 3
28 28 H 1.09004 * 109.47179 * 303.95384 * 1 2 3
29 29 H 1.08997 * 109.49825 * 52.78976 * 3 2 1
30 30 H 1.08995 * 109.49651 * 292.70012 * 3 2 1
31 31 H 1.09004 * 109.62728 * 294.12224 * 4 3 2
32 32 H 1.08995 * 109.79168 * 173.63331 * 4 3 2
33 33 H 0.97006 * 119.99499 * 5.17283 * 8 6 5
34 34 H 1.08998 * 109.47305 * 299.99731 * 9 8 6
35 35 H 1.08997 * 109.47214 * 60.00070 * 9 8 6
36 36 H 1.09003 * 109.46616 * 60.00526 * 11 10 9
37 37 H 1.08996 * 109.46646 * 180.02562 * 11 10 9
38 38 H 1.08997 * 109.47309 * 300.00374 * 11 10 9
39 39 H 1.08997 * 109.47195 * 60.00161 * 12 10 9
40 40 H 1.09003 * 109.46471 * 180.02562 * 12 10 9
41 41 H 1.08996 * 109.47215 * 299.99945 * 12 10 9
42 42 H 0.97005 * 119.99577 * 180.02562 * 16 15 13
43 43 H 1.08998 * 109.47298 * 188.45869 * 23 21 5
44 44 H 1.09008 * 109.46959 * 308.45352 * 23 21 5
45 45 H 1.00902 * 110.99735 * 56.04648 * 24 23 21
46 46 H 1.00901 * 111.00136 * 180.02562 * 24 23 21
47 47 H 1.09006 * 109.49040 * 67.29606 * 25 2 1
48 48 H 1.08993 * 109.49338 * 307.21721 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 3.5164 1.3313 0.1826
5 7 4.0870 0.4461 -0.8442
6 6 5.1053 0.8585 -1.6248
7 8 5.4927 0.1574 -2.5394
8 7 5.6942 2.0482 -1.3915
9 6 6.7234 2.5480 -2.3064
10 6 7.2247 3.9079 -1.8161
11 6 6.0576 4.8963 -1.7727
12 6 7.8182 3.7574 -0.4140
13 6 8.2840 4.4217 -2.7569
14 1 8.5706 3.8371 -3.6186
15 6 8.8864 5.6387 -2.5182
16 7 8.5371 6.3509 -1.4693
17 14 10.1988 6.2759 -3.6848
18 1 9.6230 6.4215 -5.0459
19 1 10.6847 7.5963 -3.2096
20 1 11.3319 5.3168 -3.7268
21 6 3.5164 -0.9009 -0.9967
22 1 3.7562 -1.5016 -0.1194
23 6 4.0944 -1.5651 -2.2480
24 7 5.5202 -1.8494 -2.0373
25 6 1.9955 -0.7729 -1.1329
26 1 -0.3633 0.4512 -0.9233
27 1 -0.3633 -1.0252 0.0708
28 1 -0.3634 0.5740 0.8525
29 1 1.5456 1.9338 0.8183
30 1 1.7555 1.8532 -0.9479
31 1 3.7562 0.9451 1.1733
32 1 3.9281 2.3343 0.0711
33 1 5.4364 2.5735 -0.6177
34 1 7.5550 1.8441 -2.3371
35 1 6.3007 2.6548 -3.3053
36 1 5.2918 4.5244 -1.0919
37 1 6.4148 5.8652 -1.4238
38 1 5.6348 5.0034 -2.7716
39 1 8.6497 3.0533 -0.4450
40 1 8.1750 4.7264 -0.0647
41 1 7.0524 3.3856 0.2667
42 1 8.9607 7.2073 -1.3016
43 1 3.5632 -2.4967 -2.4432
44 1 3.9795 -0.8958 -3.1006
45 1 5.6580 -2.4159 -1.2137
46 1 5.9254 -2.2883 -2.8505
47 1 1.7555 -0.2612 -2.0650
48 1 1.5457 -1.7656 -1.1363
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000567572762.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:57:24
Heat of formation + Delta-G solvation = 3.635287 kcal
Electronic energy + Delta-G solvation = -26274.718801 eV
Core-core repulsion = 22786.652882 eV
Total energy + Delta-G solvation = -3488.065918 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 298.211 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.51879 -39.25801 -38.03024 -36.08170 -35.35270 -34.26155 -32.38634 -31.70328
-29.49595 -27.53726 -27.39777 -26.62185 -25.98358 -25.03544 -22.95336 -22.17985
-20.64922 -20.45616 -18.83527 -17.73815 -17.16882 -16.66464 -16.56402 -16.44101
-16.17656 -15.92306 -15.74396 -15.34324 -15.07579 -14.87601 -14.68221 -14.40239
-14.07467 -13.95424 -13.38110 -13.22415 -13.17361 -13.04539 -12.97662 -12.67310
-12.62996 -12.58292 -12.22765 -12.19795 -12.15798 -12.09161 -11.91515 -11.43974
-11.13181 -10.67982 -10.36534 -10.13877 -9.87918 -9.51843 -9.16498 -8.75874
-7.99116 -6.14601 1.45706 1.46298 1.53267 1.86294 2.48079 2.56481
2.90158 3.20062 3.24090 3.69463 3.87833 4.01579 4.15649 4.26777
4.30830 4.33129 4.50619 4.52552 4.61390 4.62618 4.64209 4.69610
4.74029 4.76291 4.80260 4.97481 5.04866 5.05974 5.09278 5.15760
5.22887 5.25240 5.45233 5.69076 5.70188 5.71619 5.85286 5.96913
5.97991 6.18196 6.23304 6.26337 6.47749 6.54959 6.82688 6.89640
7.30977 7.52918 8.02549 8.99676
Molecular weight = 298.21amu
Principal moments of inertia in cm(-1)
A = 0.023756 B = 0.003774 C = 0.003417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1178.391044 B = 7418.353173 C = 8191.739841
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.547 5.547
3 C 0.046 3.954
4 C 0.113 3.887
5 N -0.629 5.629
6 C 0.685 3.315
7 O -0.563 6.563
8 N -0.738 5.738
9 C 0.178 3.822
10 C 0.052 3.948
11 C -0.115 4.115
12 C -0.115 4.115
13 C -0.528 4.528
14 H 0.043 0.957
15 C 0.028 3.972
16 N -0.899 5.899
17 Si 0.945 3.055
18 H -0.277 1.277
19 H -0.282 1.282
20 H -0.278 1.278
21 C 0.172 3.828
22 H 0.076 0.924
23 C 0.090 3.910
24 N -0.819 5.819
25 C 0.053 3.947
26 H 0.022 0.978
27 H 0.081 0.919
28 H 0.081 0.919
29 H 0.108 0.892
30 H 0.026 0.974
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.394 0.606
34 H 0.029 0.971
35 H 0.028 0.972
36 H 0.033 0.967
37 H 0.062 0.938
38 H 0.016 0.984
39 H 0.014 0.986
40 H 0.062 0.938
41 H 0.031 0.969
42 H 0.260 0.740
43 H 0.035 0.965
44 H 0.057 0.943
45 H 0.320 0.680
46 H 0.336 0.664
47 H 0.026 0.974
48 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.523 -13.110 5.836 21.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.271 5.271
3 C -0.083 4.083
4 C -0.011 4.011
5 N -0.369 5.369
6 C 0.386 3.614
7 O -0.438 6.438
8 N -0.397 5.397
9 C 0.053 3.947
10 C 0.051 3.949
11 C -0.173 4.173
12 C -0.173 4.173
13 C -0.567 4.567
14 H 0.061 0.939
15 C -0.171 4.171
16 N -0.538 5.538
17 Si 0.772 3.228
18 H -0.203 1.203
19 H -0.208 1.208
20 H -0.203 1.203
21 C 0.067 3.933
22 H 0.093 0.907
23 C -0.042 4.042
24 N -0.350 5.350
25 C -0.077 4.077
26 H 0.041 0.959
27 H 0.099 0.901
28 H 0.100 0.900
29 H 0.126 0.874
30 H 0.044 0.956
31 H 0.099 0.901
32 H 0.098 0.902
33 H 0.231 0.769
34 H 0.047 0.953
35 H 0.046 0.954
36 H 0.051 0.949
37 H 0.081 0.919
38 H 0.035 0.965
39 H 0.034 0.966
40 H 0.081 0.919
41 H 0.050 0.950
42 H 0.069 0.931
43 H 0.052 0.948
44 H 0.076 0.924
45 H 0.133 0.867
46 H 0.149 0.851
47 H 0.044 0.956
48 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -15.956 -12.868 5.714 21.279
hybrid contribution 0.368 0.251 -1.295 1.369
sum -15.588 -12.616 4.420 20.535
Atomic orbital electron populations
1.22430 0.85460 1.03311 1.00983 1.61942 1.09155 1.13320 1.42674
1.22482 0.94571 0.89822 1.01442 1.21802 0.93135 0.94196 0.91945
1.47216 1.35424 1.15853 1.38385 1.16155 0.80229 0.81438 0.83546
1.90950 1.66555 1.52935 1.33332 1.45450 1.42740 1.20769 1.30719
1.20914 0.87965 0.95086 0.90738 1.18346 0.93302 0.89523 0.93704
1.21617 0.96118 1.01830 0.97726 1.21609 0.97888 1.00774 0.96983
1.21253 1.21351 1.04186 1.09918 0.93856 1.25449 0.98327 0.96765
0.96590 1.69906 1.42965 1.13205 1.27716 0.85825 0.79958 0.77453
0.79602 1.20270 1.20755 1.20313 1.21185 0.91559 0.82227 0.98282
0.90653 1.21638 0.88332 0.97221 0.96978 1.59019 1.14912 1.53451
1.07646 1.22453 0.93887 0.99741 0.91609 0.95921 0.90065 0.90023
0.87400 0.95584 0.90117 0.90151 0.76862 0.95292 0.95397 0.94859
0.91946 0.96525 0.96642 0.91944 0.94994 0.93059 0.94755 0.92415
0.86702 0.85091 0.95586 0.87721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 9.58 127.69 1.22 1.55 16
2 N -0.55 -9.49 4.88 -921.47 -4.50 -13.99 16
3 C 0.05 0.84 5.62 86.38 0.49 1.33 16
4 C 0.11 2.49 6.48 86.35 0.56 3.05 16
5 N -0.63 -17.49 3.01 -811.94 -2.44 -19.94 16
6 C 0.68 24.87 8.01 179.05 1.43 26.31 16
7 O -0.56 -23.17 10.38 -3.98 -0.04 -23.21 16
8 N -0.74 -27.65 4.81 -478.54 -2.30 -29.95 16
9 C 0.18 8.00 4.51 86.38 0.39 8.39 16
10 C 0.05 2.49 0.50 -52.92 -0.03 2.46 16
11 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16
12 C -0.11 -5.33 8.08 71.98 0.58 -4.74 16
13 C -0.53 -28.73 8.01 25.60 0.21 -28.52 16
14 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16
15 C 0.03 1.52 5.15 84.66 0.44 1.96 16
16 N -0.90 -48.67 9.35 21.45 0.20 -48.47 16
17 Si 0.94 43.31 29.54 68.60 2.03 45.34 16
18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16
19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16
21 C 0.17 4.00 3.23 44.96 0.15 4.15 16
22 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16
23 C 0.09 2.28 5.41 86.31 0.47 2.74 16
24 N -0.82 -22.98 6.45 -186.71 -1.20 -24.18 16
25 C 0.05 0.99 4.92 86.38 0.42 1.41 16
26 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16
27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
28 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16
29 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16
30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
32 H 0.08 1.83 5.87 -2.39 -0.01 1.82 16
33 H 0.39 13.37 3.83 -92.70 -0.36 13.01 16
34 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
36 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16
37 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16
38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
39 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16
40 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16
41 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16
42 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16
43 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16
44 H 0.06 1.87 6.58 -2.38 -0.02 1.85 16
45 H 0.32 7.69 8.98 -89.69 -0.81 6.89 16
46 H 0.34 9.11 9.08 -89.69 -0.81 8.30 16
47 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16
48 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16
Total: -1.00 -62.46 357.37 -2.37 -64.83
By element:
Atomic # 1 Polarization: 35.18 SS G_CDS: -1.01 Total: 34.17 kcal
Atomic # 6 Polarization: 8.50 SS G_CDS: 6.91 Total: 15.40 kcal
Atomic # 7 Polarization: -126.28 SS G_CDS: -10.25 Total: -136.53 kcal
Atomic # 8 Polarization: -23.17 SS G_CDS: -0.04 Total: -23.21 kcal
Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal
Total: -62.46 -2.37 -64.83 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000567572762.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.468 kcal
(2) G-P(sol) polarization free energy of solvation -62.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.003 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.368 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.635 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds