Wall clock time and date at job start Tue Mar 31 2020 03:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47090 * 2 1 4 4 N 1.46510 * 109.46602 * 119.99515 * 2 1 3 5 5 C 1.34771 * 120.00126 * 308.90313 * 4 2 1 6 6 O 1.21279 * 120.00255 * 186.32939 * 5 4 2 7 7 C 1.50705 * 120.00073 * 6.32811 * 5 4 2 8 8 N 1.46894 * 109.47118 * 184.23143 * 7 5 4 9 9 C 1.48527 * 111.00408 * 52.60388 * 8 7 5 10 10 C 1.54931 * 103.23058 * 159.71865 * 9 8 7 11 11 C 1.54595 * 102.92177 * 322.58702 * 10 9 8 12 12 O 1.42892 * 110.39503 * 262.99456 * 11 10 9 13 13 C 1.50708 * 110.30673 * 140.87208 * 11 10 9 14 14 H 1.07997 * 119.99622 * 244.28908 * 13 11 10 15 15 C 1.37877 * 120.00146 * 64.28419 * 13 11 10 16 16 N 1.31521 * 119.99719 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00125 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47274 * 119.99867 * 17 15 13 20 20 H 1.48500 * 109.46727 * 240.00062 * 17 15 13 21 21 C 1.47899 * 111.00100 * 170.00296 * 8 7 5 22 22 C 1.46494 * 119.99537 * 128.90544 * 4 2 1 23 23 C 1.53001 * 109.47343 * 295.45771 * 22 4 2 24 24 C 1.52999 * 109.47675 * 55.46276 * 22 4 2 25 25 H 1.09000 * 109.47019 * 318.09901 * 1 2 3 26 26 H 1.09003 * 109.46597 * 78.09021 * 1 2 3 27 27 H 1.08994 * 109.47466 * 198.09199 * 1 2 3 28 28 H 1.08994 * 109.47452 * 239.99241 * 2 1 3 29 29 H 1.09002 * 109.46297 * 187.76176 * 3 2 1 30 30 H 1.08993 * 109.46579 * 307.75753 * 3 2 1 31 31 H 1.08995 * 109.47246 * 67.76672 * 3 2 1 32 32 H 1.08997 * 109.46786 * 64.23175 * 7 5 4 33 33 H 1.08996 * 109.47342 * 304.23222 * 7 5 4 34 34 H 1.09004 * 110.66986 * 278.16070 * 9 8 7 35 35 H 1.09004 * 110.66310 * 41.28354 * 9 8 7 36 36 H 1.09007 * 110.72342 * 204.22760 * 10 9 8 37 37 H 1.09003 * 110.87666 * 81.01894 * 10 9 8 38 38 H 0.96697 * 114.00187 * 295.76986 * 12 11 10 39 39 H 0.96997 * 119.99894 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.91575 * 333.50621 * 21 8 7 41 41 H 1.09006 * 109.92107 * 94.60356 * 21 8 7 42 42 H 1.09001 * 109.46965 * 175.45876 * 22 4 2 43 43 H 1.08998 * 109.47258 * 185.06454 * 23 22 4 44 44 H 1.08997 * 109.47388 * 305.06843 * 23 22 4 45 45 H 1.09004 * 109.46659 * 65.06856 * 23 22 4 46 46 H 1.09002 * 109.46888 * 64.71105 * 24 22 4 47 47 H 1.08994 * 109.47670 * 184.71555 * 24 22 4 48 48 H 1.09004 * 109.47055 * 304.71347 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5518 -0.3437 2.4122 6 8 2.0371 -0.8329 3.4102 7 6 0.4270 0.6522 2.5318 8 7 0.1726 0.9355 3.9505 9 6 1.4233 1.3316 4.6469 10 6 0.9085 2.0744 5.9053 11 6 -0.3275 2.8370 5.3751 12 8 0.0194 4.1855 5.0540 13 6 -1.4354 2.8118 6.3965 14 1 -2.3630 2.3053 6.1745 15 6 -1.2646 3.4352 7.6144 16 7 -0.1350 4.0523 7.8845 17 14 -2.6375 3.4034 8.8806 18 1 -3.7959 2.6507 8.3359 19 1 -2.1540 2.7409 10.1185 20 1 -3.0543 4.7939 9.1937 21 6 -0.7541 2.0778 4.1051 22 6 3.0136 -1.7581 1.0708 23 6 2.4091 -2.9304 0.2954 24 6 4.2380 -1.2284 0.3218 25 1 -0.3633 0.7649 0.6863 26 1 -0.3632 0.2121 -1.0056 27 1 -0.3634 -0.9768 0.3191 28 1 1.8934 -0.5139 -0.8898 29 1 3.1212 1.4455 -0.1388 30 1 1.5678 1.9947 -0.8125 31 1 1.7946 1.9147 0.9512 32 1 -0.4734 0.2397 2.0765 33 1 0.7025 1.5747 2.0208 34 1 2.0016 0.4518 4.9292 35 1 2.0166 1.9990 4.0219 36 1 1.6607 2.7702 6.2772 37 1 0.6209 1.3673 6.6834 38 1 0.2965 4.7124 5.8160 39 1 -0.0147 4.4906 8.7414 40 1 -0.6817 2.7345 3.2381 41 1 -1.7764 1.7150 4.2115 42 1 3.3125 -2.0947 2.0635 43 1 3.1170 -3.7591 0.2795 44 1 1.4867 -3.2498 0.7804 45 1 2.1931 -2.6175 -0.7261 46 1 4.7175 -0.4493 0.9145 47 1 4.9424 -2.0432 0.1548 48 1 3.9265 -0.8152 -0.6375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:40 Heat of formation + Delta-G solvation = -60.140748 kcal Electronic energy + Delta-G solvation = -26409.216307 eV Core-core repulsion = 22886.092101 eV Total energy + Delta-G solvation = -3523.124206 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54687 -38.13285 -36.74439 -35.00006 -33.99863 -32.00349 -30.48529 -30.11953 -27.94715 -27.86530 -27.08515 -26.28271 -24.13677 -22.44494 -21.57119 -20.21109 -19.46072 -18.53910 -17.06683 -16.98980 -16.11218 -15.51112 -15.01823 -14.80428 -14.51710 -14.29757 -14.25055 -14.07093 -13.77501 -13.31242 -13.14699 -12.93048 -12.75528 -12.43775 -12.37900 -12.27809 -11.97372 -11.72112 -11.63721 -11.45634 -11.29278 -11.24416 -11.15079 -10.99946 -10.78731 -10.74205 -10.44510 -10.38025 -10.11302 -9.85133 -9.35996 -9.03746 -8.68517 -8.51724 -7.98630 -7.67456 -6.13117 -4.18771 2.81607 2.90214 3.27800 3.35955 3.40879 4.37173 4.41562 4.63162 4.69721 4.78480 4.86990 4.99319 5.00486 5.12393 5.15643 5.28910 5.34670 5.37365 5.49723 5.53504 5.55145 5.57614 5.65491 5.70623 5.78161 5.86211 5.98462 6.02456 6.03894 6.10380 6.17549 6.24921 6.37112 6.43116 6.59561 6.80193 7.00366 7.23098 7.38420 7.40595 7.62182 7.75140 7.77725 7.92770 8.22786 8.42662 8.82732 9.47808 9.58972 10.94725 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.028530 B = 0.003675 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.183822 B = 7618.080988 C = 7765.819678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.137 3.863 3 C -0.176 4.176 4 N -0.613 5.613 5 C 0.520 3.480 6 O -0.518 6.518 7 C 0.012 3.988 8 N -0.500 5.500 9 C 0.031 3.969 10 C -0.118 4.118 11 C 0.243 3.757 12 O -0.596 6.596 13 C -0.526 4.526 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.054 3.946 22 C 0.130 3.870 23 C -0.159 4.159 24 C -0.159 4.159 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.022 0.978 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.384 0.616 39 H 0.265 0.735 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -8.699 -18.062 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.034 3.966 3 C -0.234 4.234 4 N -0.349 5.349 5 C 0.309 3.691 6 O -0.392 6.392 7 C -0.118 4.118 8 N -0.225 5.225 9 C -0.096 4.096 10 C -0.157 4.157 11 C 0.203 3.797 12 O -0.406 6.406 13 C -0.564 4.564 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.073 4.073 22 C 0.027 3.973 23 C -0.217 4.217 24 C -0.218 4.218 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.583 -9.544 -17.751 20.913 hybrid contribution -0.180 0.955 0.755 1.231 sum 5.404 -8.588 -16.996 19.795 Atomic orbital electron populations 1.22824 0.94867 1.03690 1.03335 1.20988 0.94359 0.93040 0.88250 1.22457 1.01752 0.95967 1.03261 1.48244 1.43076 1.37254 1.06303 1.20704 0.83474 0.82564 0.82402 1.90644 1.58739 1.54158 1.35665 1.23123 0.97623 0.97608 0.93477 1.64808 1.11584 1.38426 1.07702 1.23478 0.91215 0.98752 0.96151 1.22980 0.98790 0.98693 0.95228 1.19348 0.91366 0.79707 0.89300 1.86057 1.89489 1.25077 1.39981 1.21746 1.01141 1.34214 0.99345 0.91922 1.25014 0.95775 0.94570 0.98055 1.69636 1.24316 1.36056 1.24051 0.86406 0.82068 0.77683 0.81043 1.19670 1.20922 1.20992 1.22918 0.96531 0.89660 0.98210 1.21000 0.87985 0.87011 1.01293 1.22156 1.01571 0.97785 1.00226 1.22158 0.97486 1.01659 1.00449 0.89945 0.91433 0.91647 0.89286 0.92168 0.91224 0.91417 0.87129 0.91697 0.89131 0.95993 0.91953 0.91449 0.76478 0.92463 0.94744 0.90218 0.88161 0.91680 0.92207 0.92591 0.92236 0.91639 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 7.75 37.16 0.29 -1.36 16 2 C 0.14 1.25 2.30 -67.92 -0.16 1.10 16 3 C -0.18 -1.65 9.15 37.16 0.34 -1.31 16 4 N -0.61 -7.32 2.31 -158.58 -0.37 -7.69 16 5 C 0.52 8.36 6.80 -10.99 -0.07 8.29 16 6 O -0.52 -10.27 13.05 5.56 0.07 -10.19 16 7 C 0.01 0.20 3.16 -4.98 -0.02 0.18 16 8 N -0.50 -10.42 5.23 -231.90 -1.21 -11.64 16 9 C 0.03 0.69 5.34 -1.90 -0.01 0.68 16 10 C -0.12 -2.95 5.50 -24.87 -0.14 -3.09 16 11 C 0.24 6.26 0.99 -90.41 -0.09 6.17 16 12 O -0.60 -15.91 12.93 -35.23 -0.46 -16.37 16 13 C -0.53 -14.56 8.10 -34.44 -0.28 -14.83 16 14 H 0.06 1.73 7.35 -52.49 -0.39 1.34 16 15 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 16 N -0.90 -24.75 10.88 55.43 0.60 -24.15 16 17 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.05 1.21 6.16 -2.76 -0.02 1.20 16 22 C 0.13 1.38 3.19 -67.93 -0.22 1.16 16 23 C -0.16 -1.34 9.18 37.16 0.34 -1.00 16 24 C -0.16 -1.36 9.20 37.16 0.34 -1.02 16 25 H 0.08 0.82 4.43 -51.93 -0.23 0.59 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.09 0.65 6.17 -51.93 -0.32 0.33 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.07 0.80 5.13 -51.93 -0.27 0.53 16 32 H 0.11 1.57 5.51 -51.93 -0.29 1.29 16 33 H 0.07 1.00 4.40 -51.93 -0.23 0.77 16 34 H 0.09 2.06 6.05 -51.93 -0.31 1.75 16 35 H 0.02 0.48 8.02 -51.93 -0.42 0.06 16 36 H 0.06 1.61 8.06 -51.93 -0.42 1.19 16 37 H 0.07 1.80 7.86 -51.93 -0.41 1.39 16 38 H 0.38 10.45 7.05 45.56 0.32 10.77 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.73 7.39 -51.93 -0.38 0.35 16 41 H 0.08 1.77 7.40 -51.93 -0.38 1.39 16 42 H 0.10 1.31 6.91 -51.93 -0.36 0.95 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.40 7.27 -51.93 -0.38 0.02 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.43 6.86 -51.93 -0.36 0.07 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -30.66 356.55 -8.11 -38.77 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -7.33 Total: 11.76 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 0.22 Total: -2.10 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.98 Total: -43.47 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.38 Total: -26.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.66 -8.11 -38.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.373 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds