Wall clock time and date at job start Tue Mar 31 2020 03:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47090 * 2 1 4 4 N 1.46510 * 109.46602 * 119.99515 * 2 1 3 5 5 C 1.34771 * 120.00126 * 308.90313 * 4 2 1 6 6 O 1.21279 * 120.00255 * 186.32939 * 5 4 2 7 7 C 1.50705 * 120.00073 * 6.32811 * 5 4 2 8 8 N 1.46894 * 109.47118 * 184.23143 * 7 5 4 9 9 C 1.48527 * 111.00408 * 52.60388 * 8 7 5 10 10 C 1.54931 * 103.23058 * 159.71865 * 9 8 7 11 11 C 1.54595 * 102.92177 * 322.58702 * 10 9 8 12 12 O 1.42892 * 110.39503 * 262.99456 * 11 10 9 13 13 C 1.50708 * 110.30673 * 140.87208 * 11 10 9 14 14 H 1.07997 * 119.99622 * 244.28908 * 13 11 10 15 15 C 1.37877 * 120.00146 * 64.28419 * 13 11 10 16 16 N 1.31521 * 119.99719 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00125 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47274 * 119.99867 * 17 15 13 20 20 H 1.48500 * 109.46727 * 240.00062 * 17 15 13 21 21 C 1.47899 * 111.00100 * 170.00296 * 8 7 5 22 22 C 1.46494 * 119.99537 * 128.90544 * 4 2 1 23 23 C 1.53001 * 109.47343 * 295.45771 * 22 4 2 24 24 C 1.52999 * 109.47675 * 55.46276 * 22 4 2 25 25 H 1.09000 * 109.47019 * 318.09901 * 1 2 3 26 26 H 1.09003 * 109.46597 * 78.09021 * 1 2 3 27 27 H 1.08994 * 109.47466 * 198.09199 * 1 2 3 28 28 H 1.08994 * 109.47452 * 239.99241 * 2 1 3 29 29 H 1.09002 * 109.46297 * 187.76176 * 3 2 1 30 30 H 1.08993 * 109.46579 * 307.75753 * 3 2 1 31 31 H 1.08995 * 109.47246 * 67.76672 * 3 2 1 32 32 H 1.08997 * 109.46786 * 64.23175 * 7 5 4 33 33 H 1.08996 * 109.47342 * 304.23222 * 7 5 4 34 34 H 1.09004 * 110.66986 * 278.16070 * 9 8 7 35 35 H 1.09004 * 110.66310 * 41.28354 * 9 8 7 36 36 H 1.09007 * 110.72342 * 204.22760 * 10 9 8 37 37 H 1.09003 * 110.87666 * 81.01894 * 10 9 8 38 38 H 0.96697 * 114.00187 * 295.76986 * 12 11 10 39 39 H 0.96997 * 119.99894 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.91575 * 333.50621 * 21 8 7 41 41 H 1.09006 * 109.92107 * 94.60356 * 21 8 7 42 42 H 1.09001 * 109.46965 * 175.45876 * 22 4 2 43 43 H 1.08998 * 109.47258 * 185.06454 * 23 22 4 44 44 H 1.08997 * 109.47388 * 305.06843 * 23 22 4 45 45 H 1.09004 * 109.46659 * 65.06856 * 23 22 4 46 46 H 1.09002 * 109.46888 * 64.71105 * 24 22 4 47 47 H 1.08994 * 109.47670 * 184.71555 * 24 22 4 48 48 H 1.09004 * 109.47055 * 304.71347 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5518 -0.3437 2.4122 6 8 2.0371 -0.8329 3.4102 7 6 0.4270 0.6522 2.5318 8 7 0.1726 0.9355 3.9505 9 6 1.4233 1.3316 4.6469 10 6 0.9085 2.0744 5.9053 11 6 -0.3275 2.8370 5.3751 12 8 0.0194 4.1855 5.0540 13 6 -1.4354 2.8118 6.3965 14 1 -2.3630 2.3053 6.1745 15 6 -1.2646 3.4352 7.6144 16 7 -0.1350 4.0523 7.8845 17 14 -2.6375 3.4034 8.8806 18 1 -3.7959 2.6507 8.3359 19 1 -2.1540 2.7409 10.1185 20 1 -3.0543 4.7939 9.1937 21 6 -0.7541 2.0778 4.1051 22 6 3.0136 -1.7581 1.0708 23 6 2.4091 -2.9304 0.2954 24 6 4.2380 -1.2284 0.3218 25 1 -0.3633 0.7649 0.6863 26 1 -0.3632 0.2121 -1.0056 27 1 -0.3634 -0.9768 0.3191 28 1 1.8934 -0.5139 -0.8898 29 1 3.1212 1.4455 -0.1388 30 1 1.5678 1.9947 -0.8125 31 1 1.7946 1.9147 0.9512 32 1 -0.4734 0.2397 2.0765 33 1 0.7025 1.5747 2.0208 34 1 2.0016 0.4518 4.9292 35 1 2.0166 1.9990 4.0219 36 1 1.6607 2.7702 6.2772 37 1 0.6209 1.3673 6.6834 38 1 0.2965 4.7124 5.8160 39 1 -0.0147 4.4906 8.7414 40 1 -0.6817 2.7345 3.2381 41 1 -1.7764 1.7150 4.2115 42 1 3.3125 -2.0947 2.0635 43 1 3.1170 -3.7591 0.2795 44 1 1.4867 -3.2498 0.7804 45 1 2.1931 -2.6175 -0.7261 46 1 4.7175 -0.4493 0.9145 47 1 4.9424 -2.0432 0.1548 48 1 3.9265 -0.8152 -0.6375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:39 Heat of formation + Delta-G solvation = -82.375461 kcal Electronic energy + Delta-G solvation = -26410.180477 eV Core-core repulsion = 22886.092101 eV Total energy + Delta-G solvation = -3524.088375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71408 -39.82733 -37.95687 -36.59561 -35.10736 -34.12292 -31.95692 -31.26702 -29.84890 -28.67167 -28.02394 -27.60326 -25.98480 -23.30138 -22.90190 -21.78958 -21.30553 -19.63933 -19.12966 -17.98429 -17.40901 -16.97187 -16.69737 -16.51817 -15.92416 -15.75375 -15.39133 -15.08650 -14.99798 -14.62177 -14.27672 -14.14510 -13.91836 -13.80836 -13.59287 -13.43167 -13.19551 -13.08289 -12.98382 -12.93230 -12.58812 -12.51551 -12.45137 -12.31370 -12.23658 -12.07272 -11.99467 -11.85492 -11.80075 -11.38540 -11.15814 -10.69232 -10.54463 -10.06803 -9.68183 -9.31201 -8.21060 -6.34777 1.40304 1.42774 1.54347 1.58698 1.90212 2.40194 2.99313 3.13979 3.43821 3.84805 3.89256 3.99793 4.04983 4.13434 4.19775 4.28671 4.30039 4.33019 4.38503 4.41469 4.49111 4.59676 4.62427 4.72537 4.74859 4.82014 4.87139 4.90544 4.94351 4.97019 5.06697 5.08004 5.25362 5.29090 5.32078 5.34778 5.35847 5.38878 5.56660 5.73821 5.76783 5.92420 6.06463 6.14859 6.44471 6.69980 7.23352 7.34846 7.43610 8.85587 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.028530 B = 0.003675 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.183822 B = 7618.080988 C = 7765.819678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.132 3.868 3 C -0.174 4.174 4 N -0.601 5.601 5 C 0.516 3.484 6 O -0.567 6.567 7 C 0.013 3.987 8 N -0.511 5.511 9 C 0.050 3.950 10 C -0.111 4.111 11 C 0.228 3.772 12 O -0.599 6.599 13 C -0.553 4.553 14 H 0.058 0.942 15 C 0.025 3.975 16 N -0.917 5.917 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.277 1.277 21 C 0.064 3.936 22 C 0.123 3.877 23 C -0.151 4.151 24 C -0.152 4.152 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.135 0.865 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.378 0.622 39 H 0.269 0.731 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.040 0.960 47 H 0.083 0.917 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 -9.301 -20.701 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.030 3.970 3 C -0.232 4.232 4 N -0.335 5.335 5 C 0.304 3.696 6 O -0.445 6.445 7 C -0.117 4.117 8 N -0.236 5.236 9 C -0.078 4.078 10 C -0.150 4.150 11 C 0.188 3.812 12 O -0.409 6.409 13 C -0.591 4.591 14 H 0.076 0.924 15 C -0.175 4.175 16 N -0.558 5.558 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.202 1.202 21 C -0.064 4.064 22 C 0.020 3.980 23 C -0.209 4.209 24 C -0.210 4.210 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.152 0.848 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.228 0.772 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.102 0.898 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.124 -10.150 -20.458 23.405 hybrid contribution 0.010 1.130 1.494 1.874 sum 5.134 -9.020 -18.963 21.617 Atomic orbital electron populations 1.22784 0.94258 1.02891 1.04659 1.21308 0.94890 0.93016 0.87783 1.22440 1.02218 0.95994 1.02562 1.48328 1.42332 1.36966 1.05904 1.20699 0.83380 0.82288 0.83186 1.90624 1.60314 1.56051 1.37538 1.23320 0.99115 0.98577 0.90673 1.64713 1.10573 1.37419 1.10945 1.23199 0.91707 0.97890 0.94973 1.22786 0.98405 0.97957 0.95801 1.19575 0.91168 0.79502 0.90910 1.86047 1.89498 1.25630 1.39691 1.22005 1.01574 1.34989 1.00531 0.92420 1.25745 0.97950 0.94103 0.99697 1.69721 1.25530 1.36028 1.24511 0.85433 0.79361 0.77868 0.78491 1.19358 1.20691 1.20224 1.22745 0.96787 0.89887 0.96937 1.21168 0.88768 0.87559 1.00505 1.22088 1.01026 0.97114 1.00639 1.22101 0.96580 1.01775 1.00511 0.91378 0.88661 0.92130 0.86265 0.91912 0.88922 0.94164 0.84812 0.90290 0.89844 0.95860 0.93618 0.93943 0.77162 0.92195 0.93685 0.90168 0.91373 0.90197 0.93740 0.90413 0.94052 0.89838 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 7.75 71.98 0.56 -2.13 16 2 C 0.13 2.00 2.30 44.99 0.10 2.11 16 3 C -0.17 -2.80 9.15 71.98 0.66 -2.14 16 4 N -0.60 -13.53 2.31 -774.02 -1.79 -15.32 16 5 C 0.52 16.53 6.80 87.66 0.60 17.12 16 6 O -0.57 -23.19 13.05 -3.03 -0.04 -23.23 16 7 C 0.01 0.41 3.16 85.56 0.27 0.68 16 8 N -0.51 -21.46 5.23 -887.60 -4.65 -26.11 16 9 C 0.05 2.27 5.34 86.65 0.46 2.73 16 10 C -0.11 -5.74 5.50 31.80 0.17 -5.57 16 11 C 0.23 12.01 0.99 -10.66 -0.01 12.00 16 12 O -0.60 -32.54 12.93 -148.98 -1.93 -34.47 16 13 C -0.55 -31.07 8.10 25.60 0.21 -30.87 16 14 H 0.06 3.22 7.35 -2.91 -0.02 3.19 16 15 C 0.02 1.35 5.26 84.65 0.45 1.80 16 16 N -0.92 -51.25 10.88 21.45 0.23 -51.02 16 17 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.06 2.87 6.16 86.45 0.53 3.40 16 22 C 0.12 2.44 3.19 44.99 0.14 2.59 16 23 C -0.15 -2.16 9.18 71.98 0.66 -1.50 16 24 C -0.15 -2.24 9.20 71.98 0.66 -1.58 16 25 H 0.07 1.18 4.43 -2.39 -0.01 1.17 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.95 8.07 -2.39 -0.02 0.93 16 28 H 0.12 1.16 6.17 -2.39 -0.01 1.15 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.04 0.88 5.13 -2.39 -0.01 0.87 16 32 H 0.13 3.61 5.51 -2.39 -0.01 3.60 16 33 H 0.08 2.34 4.40 -2.39 -0.01 2.33 16 34 H 0.08 3.96 6.05 -2.39 -0.01 3.95 16 35 H 0.02 1.04 8.02 -2.38 -0.02 1.02 16 36 H 0.05 2.46 8.06 -2.38 -0.02 2.44 16 37 H 0.04 2.36 7.86 -2.39 -0.02 2.34 16 38 H 0.38 21.12 7.05 -74.06 -0.52 20.60 16 39 H 0.27 14.22 8.31 -92.71 -0.77 13.44 16 40 H 0.04 1.89 7.39 -2.38 -0.02 1.87 16 41 H 0.08 3.56 7.40 -2.38 -0.02 3.54 16 42 H 0.07 1.82 6.91 -2.39 -0.02 1.80 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.79 7.27 -2.38 -0.02 0.77 16 46 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.08 0.84 6.86 -2.39 -0.02 0.83 16 Total: -1.00 -68.11 356.55 -0.24 -68.35 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.43 Total: 37.31 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.46 Total: -1.36 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -6.20 Total: -92.44 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -1.97 Total: -57.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.11 -0.24 -68.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.026 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds