Wall clock time and date at job start Tue Mar 31 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47409 * 2 1 4 4 N 1.46501 * 109.47725 * 179.97438 * 3 2 1 5 5 C 1.46492 * 120.00344 * 270.00565 * 4 3 2 6 6 C 1.53008 * 109.47232 * 269.99687 * 5 4 3 7 7 C 1.52998 * 109.47328 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99805 * 89.99817 * 4 3 2 9 9 O 1.21287 * 119.99603 * 0.02562 * 8 4 3 10 10 C 1.50696 * 120.00236 * 180.02562 * 8 4 3 11 11 N 1.46900 * 109.47290 * 186.04065 * 10 8 4 12 12 C 1.48555 * 110.99631 * 176.49323 * 11 10 8 13 13 C 1.54383 * 104.59144 * 200.96102 * 12 11 10 14 14 C 1.54261 * 105.06109 * 23.85355 * 13 12 11 15 15 O 1.42897 * 110.32185 * 118.99840 * 14 13 12 16 16 C 1.50698 * 110.32298 * 241.10541 * 14 13 12 17 17 H 1.07994 * 120.00206 * 118.55126 * 16 14 13 18 18 C 1.37880 * 120.00147 * 298.54156 * 16 14 13 19 19 N 1.31520 * 119.99971 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00191 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47361 * 59.99905 * 20 18 16 22 22 H 1.48500 * 109.47309 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47082 * 299.99868 * 20 18 16 24 24 C 1.48562 * 110.99620 * 61.07439 * 11 10 8 25 25 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47283 * 300.00066 * 1 2 3 27 27 H 1.09003 * 109.47322 * 60.00113 * 1 2 3 28 28 H 1.09002 * 109.47283 * 239.99934 * 2 1 3 29 29 H 1.09003 * 109.47322 * 119.99887 * 2 1 3 30 30 H 1.09002 * 109.46952 * 59.99731 * 3 2 1 31 31 H 1.08997 * 109.47445 * 300.00197 * 3 2 1 32 32 H 1.09001 * 109.47318 * 29.99102 * 5 4 3 33 33 H 1.08998 * 109.47436 * 149.99681 * 5 4 3 34 34 H 1.09001 * 109.46491 * 299.99922 * 6 5 4 35 35 H 1.08998 * 109.46915 * 59.99674 * 6 5 4 36 36 H 1.08997 * 109.46863 * 179.97438 * 7 6 5 37 37 H 1.09008 * 109.46912 * 299.99695 * 7 6 5 38 38 H 1.08999 * 109.47390 * 59.99347 * 7 6 5 39 39 H 1.09001 * 109.46697 * 66.03977 * 10 8 4 40 40 H 1.09005 * 109.47042 * 306.04397 * 10 8 4 41 41 H 1.09000 * 110.41603 * 82.18753 * 12 11 10 42 42 H 1.09000 * 110.41948 * 319.73609 * 12 11 10 43 43 H 1.09000 * 110.32618 * 264.95605 * 13 12 11 44 44 H 1.09006 * 110.41347 * 142.79551 * 13 12 11 45 45 H 0.96699 * 114.00662 * 62.83235 * 15 14 13 46 46 H 0.96989 * 120.00228 * 179.97438 * 19 18 16 47 47 H 1.09005 * 110.41079 * 40.26194 * 24 11 10 48 48 H 1.09000 * 110.41082 * 277.81766 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4426 1.2695 6 6 4.4918 2.8852 1.7112 7 6 5.2569 2.8853 3.0362 8 6 4.1793 1.4423 -1.1664 9 8 3.5732 1.4426 -2.2169 10 6 5.6863 1.4418 -1.1658 11 7 6.1765 1.5875 -2.5429 12 6 7.6592 1.6756 -2.5736 13 6 7.9810 2.3467 -3.9262 14 6 6.7067 3.1333 -4.2967 15 8 6.9968 4.5288 -4.3984 16 6 6.1349 2.6224 -5.5940 17 1 5.1433 2.1954 -5.6161 18 6 6.8778 2.7005 -6.7530 19 7 8.0856 3.2203 -6.7261 20 14 6.1689 2.0679 -8.3612 21 1 4.9254 2.8138 -8.6813 22 1 7.1591 2.2650 -9.4502 23 1 5.8588 0.6215 -8.2306 24 6 5.7221 2.8712 -3.1368 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.6476 0.9289 2.0291 33 1 5.1894 0.9288 1.1396 34 1 5.0812 3.3989 0.9517 35 1 3.5394 3.3990 1.8411 36 1 5.4388 3.9130 3.3505 37 1 4.6679 2.3715 3.7959 38 1 6.2093 2.3716 2.9059 39 1 6.0491 0.5026 -0.7484 40 1 6.0497 2.2727 -0.5610 41 1 8.1002 0.6798 -2.5290 42 1 8.0208 2.2899 -1.7490 43 1 8.1929 1.5913 -4.6828 44 1 8.8278 3.0252 -3.8221 45 1 7.6284 4.7494 -5.0966 46 1 8.6084 3.2749 -7.5412 47 1 5.7805 3.6726 -2.4001 48 1 4.7047 2.7756 -3.5160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:46 Heat of formation + Delta-G solvation = -87.741723 kcal Electronic energy + Delta-G solvation = -25812.899498 eV Core-core repulsion = 22288.578424 eV Total energy + Delta-G solvation = -3524.321074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.04192 -38.03877 -36.35857 -34.81995 -34.27736 -32.26762 -31.97971 -30.38007 -27.84731 -27.36035 -26.44016 -25.07483 -23.91709 -22.09468 -21.64556 -20.37203 -19.49180 -18.78441 -17.12123 -16.82200 -16.29462 -15.49785 -15.06061 -14.89057 -14.72254 -14.68831 -14.44482 -13.79782 -13.68804 -13.51204 -13.42105 -12.57119 -12.51948 -12.42383 -12.29457 -12.10941 -11.91941 -11.73890 -11.69720 -11.53482 -11.38238 -11.26105 -11.02410 -10.98749 -10.83127 -10.75424 -10.52998 -10.40275 -10.19297 -9.79709 -9.32764 -8.93407 -8.62140 -8.44438 -8.02053 -7.76250 -6.04810 -4.08788 2.89220 2.97221 3.38000 3.40142 3.46374 4.46458 4.47316 4.64966 4.65762 4.75280 4.92459 4.93816 5.06217 5.14263 5.19812 5.24942 5.32706 5.38730 5.46288 5.48749 5.52878 5.59657 5.70551 5.77963 5.79296 5.85307 5.89024 5.97210 6.04393 6.05566 6.14785 6.18173 6.25418 6.41636 6.55039 6.67282 7.02878 7.19452 7.30456 7.37474 7.67302 7.74329 7.76278 7.98095 8.35595 8.48464 8.95368 9.54257 9.62809 11.02808 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.004173 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.659669 B = 6707.819484 C = 7887.802079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.623 5.623 5 C 0.111 3.889 6 C -0.146 4.146 7 C -0.149 4.149 8 C 0.514 3.486 9 O -0.504 6.504 10 C 0.028 3.972 11 N -0.483 5.483 12 C 0.032 3.968 13 C -0.120 4.120 14 C 0.249 3.751 15 O -0.596 6.596 16 C -0.513 4.513 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.904 5.904 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.055 3.945 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.051 0.949 45 H 0.382 0.618 46 H 0.264 0.736 47 H 0.022 0.978 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -4.102 19.620 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C -0.005 4.005 4 N -0.358 5.358 5 C -0.013 4.013 6 C -0.185 4.185 7 C -0.207 4.207 8 C 0.301 3.699 9 O -0.377 6.377 10 C -0.104 4.104 11 N -0.208 5.208 12 C -0.096 4.096 13 C -0.159 4.159 14 C 0.209 3.791 15 O -0.405 6.405 16 C -0.551 4.551 17 H 0.082 0.918 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.072 4.072 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.232 0.768 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.418 -4.497 19.096 20.974 hybrid contribution 0.484 0.229 -0.662 0.852 sum -6.934 -4.268 18.433 20.152 Atomic orbital electron populations 1.21685 0.95316 1.01776 1.01851 1.21877 0.95993 0.97443 1.02453 1.21437 0.79416 0.96803 1.02890 1.48050 1.06376 1.75459 1.05958 1.21617 0.97274 0.96832 0.85551 1.22003 1.01193 0.97330 0.97971 1.21699 1.00282 1.02074 0.96661 1.20701 0.90184 0.75891 0.83102 1.90734 1.69868 1.46596 1.30465 1.22237 0.92073 1.02344 0.93751 1.65267 1.07229 1.35307 1.12991 1.23201 0.87759 0.99666 0.98950 1.22850 0.99378 1.00041 0.93601 1.19273 0.88909 0.78905 0.92047 1.86079 1.68083 1.26612 1.59690 1.21662 1.02126 1.38906 0.92398 0.91845 1.25000 0.94653 0.94767 0.99216 1.69690 1.10033 1.46252 1.28589 0.86537 0.78735 0.79555 0.82481 1.20216 1.21410 1.20140 1.23106 1.01280 0.86975 0.95886 0.92625 0.92866 0.92372 0.91316 0.92239 0.91082 0.89852 0.90488 0.90331 0.91471 0.91623 0.92415 0.92659 0.92435 0.88551 0.92687 0.91394 0.95355 0.90530 0.92981 0.76788 0.92574 0.96016 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.15 0.37 -0.91 16 2 C -0.14 -1.43 6.26 -26.74 -0.17 -1.59 16 3 C 0.12 1.31 5.41 -4.04 -0.02 1.29 16 4 N -0.62 -7.68 2.47 -173.69 -0.43 -8.11 16 5 C 0.11 0.97 5.13 -4.04 -0.02 0.95 16 6 C -0.15 -1.26 6.20 -26.73 -0.17 -1.42 16 7 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 8 C 0.51 8.58 7.32 -10.99 -0.08 8.50 16 9 O -0.50 -10.73 14.01 5.55 0.08 -10.65 16 10 C 0.03 0.44 3.85 -4.98 -0.02 0.43 16 11 N -0.48 -10.11 5.18 -231.41 -1.20 -11.31 16 12 C 0.03 0.63 6.49 -2.18 -0.01 0.62 16 13 C -0.12 -2.89 5.56 -25.35 -0.14 -3.03 16 14 C 0.25 6.57 1.06 -90.39 -0.10 6.47 16 15 O -0.60 -16.26 12.95 -35.23 -0.46 -16.71 16 16 C -0.51 -14.77 8.10 -34.44 -0.28 -15.05 16 17 H 0.06 1.90 7.53 -52.49 -0.40 1.50 16 18 C 0.06 1.79 5.02 -17.82 -0.09 1.70 16 19 N -0.90 -25.12 10.80 55.43 0.60 -24.52 16 20 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.05 1.31 4.86 -2.18 -0.01 1.30 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.08 1.12 7.42 -51.93 -0.39 0.74 16 32 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.08 0.65 6.61 -51.93 -0.34 0.30 16 34 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 1.30 7.71 -51.93 -0.40 0.90 16 40 H 0.06 0.80 6.70 -51.93 -0.35 0.46 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.51 7.92 -51.93 -0.41 0.10 16 43 H 0.08 2.01 7.24 -51.93 -0.38 1.63 16 44 H 0.05 1.24 7.98 -51.93 -0.41 0.83 16 45 H 0.38 10.45 7.30 45.56 0.33 10.78 16 46 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16 48 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -31.87 374.71 -9.19 -41.06 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.04 Total: 8.98 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.37 Total: -1.39 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -1.03 Total: -43.95 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.38 Total: -27.37 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.87 -9.19 -41.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.681 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds