Wall clock time and date at job start Tue Mar 31 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 H 1.09003 * 109.47026 * 304.30844 * 3 2 1 5 5 C 1.50695 * 109.47392 * 184.30895 * 3 2 1 6 6 O 1.21279 * 119.99921 * 259.65286 * 5 3 2 7 7 N 1.34780 * 120.00166 * 79.65504 * 5 3 2 8 8 C 1.47020 * 125.64654 * 3.54164 * 7 5 3 9 9 C 1.54324 * 107.27001 * 181.02122 * 8 7 5 10 10 C 1.55167 * 102.93968 * 22.19695 * 9 8 7 11 11 O 1.42901 * 111.00337 * 82.57266 * 10 9 8 12 12 C 1.50697 * 111.00162 * 206.38406 * 10 9 8 13 13 H 1.07996 * 120.00430 * 118.54392 * 12 10 9 14 14 C 1.37886 * 120.00060 * 298.54413 * 12 10 9 15 15 N 1.31511 * 119.99866 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99966 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47157 * 59.99832 * 16 14 12 18 18 H 1.48496 * 109.46969 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46851 * 299.99910 * 16 14 12 20 20 C 1.47425 * 125.64478 * 183.23809 * 7 5 3 21 21 N 1.46898 * 109.46964 * 64.30380 * 3 2 1 22 22 C 1.46897 * 111.00279 * 274.75552 * 21 3 2 23 23 C 1.52996 * 109.47387 * 287.69884 * 22 21 3 24 24 C 1.46897 * 111.00033 * 38.71363 * 21 3 2 25 25 C 1.52997 * 109.47529 * 159.69878 * 24 21 3 26 26 H 1.08996 * 109.47374 * 289.21436 * 1 2 3 27 27 H 1.09001 * 109.47423 * 49.21938 * 1 2 3 28 28 H 1.09001 * 109.47230 * 169.21757 * 1 2 3 29 29 H 1.09007 * 109.47041 * 240.00391 * 2 1 3 30 30 H 1.08994 * 109.47345 * 120.00477 * 2 1 3 31 31 H 1.08996 * 109.88458 * 300.44119 * 8 7 5 32 32 H 1.08998 * 109.87884 * 61.61007 * 8 7 5 33 33 H 1.08995 * 110.71835 * 140.55329 * 9 8 7 34 34 H 1.08997 * 110.72458 * 263.65513 * 9 8 7 35 35 H 0.96696 * 114.00540 * 61.45143 * 11 10 9 36 36 H 0.97003 * 120.00012 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.36539 * 274.74101 * 20 7 5 38 38 H 1.08996 * 110.37295 * 37.07069 * 20 7 5 39 39 H 1.09008 * 109.47219 * 167.69793 * 22 21 3 40 40 H 1.09004 * 109.47065 * 47.70350 * 22 21 3 41 41 H 1.09000 * 109.46964 * 176.88057 * 23 22 21 42 42 H 1.08997 * 109.47254 * 296.87805 * 23 22 21 43 43 H 1.09003 * 109.47100 * 56.88361 * 23 22 21 44 44 H 1.09004 * 109.47068 * 279.70124 * 24 21 3 45 45 H 1.09007 * 109.46996 * 39.69593 * 24 21 3 46 46 H 1.09001 * 109.47059 * 59.99436 * 25 24 21 47 47 H 1.09000 * 109.47692 * 180.02562 * 25 24 21 48 48 H 1.09004 * 109.47146 * 300.00198 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6150 1.9781 -0.8489 5 6 3.5432 1.4438 -0.1067 6 8 4.2214 1.6071 0.8853 7 7 4.1339 1.2637 -1.3047 8 6 3.4368 1.1288 -2.5921 9 6 4.5141 0.9153 -3.6763 10 6 5.7219 0.3765 -2.8646 11 8 5.5986 -1.0284 -2.6345 12 6 7.0225 0.6957 -3.5557 13 1 7.7558 1.3189 -3.0655 14 6 7.2765 0.1920 -4.8139 15 7 6.3834 -0.5665 -5.4110 16 14 8.8890 0.5870 -5.6701 17 1 10.0209 0.0879 -4.8487 18 1 8.9160 -0.0693 -7.0019 19 1 9.0117 2.0570 -5.8406 20 6 5.5863 1.1755 -1.5419 21 7 1.6370 2.1043 1.2480 22 6 0.2803 2.6564 1.1369 23 6 0.3028 3.8853 0.2258 24 6 1.7392 1.1842 2.3886 25 6 1.8138 1.9886 3.6878 26 1 -0.3634 0.3382 0.9704 27 1 -0.3634 0.6712 -0.7782 28 1 -0.3634 -1.0095 -0.1923 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.7658 0.2704 -2.5622 32 1 2.8719 2.0364 -2.8046 33 1 4.1831 0.1796 -4.4092 34 1 4.7631 1.8580 -4.1635 35 1 5.5797 -1.5592 -3.4426 36 1 6.5619 -0.9205 -6.2964 37 1 6.0137 2.1721 -1.6525 38 1 6.0724 0.6418 -0.7253 39 1 -0.0772 2.9438 2.1258 40 1 -0.3850 1.9032 0.7148 41 1 -0.7121 4.2621 0.0988 42 1 0.9243 4.6597 0.6755 43 1 0.7123 3.6096 -0.7461 44 1 0.8630 0.5362 2.4122 45 1 2.6380 0.5761 2.2855 46 1 0.9151 2.5967 3.7908 47 1 1.8901 1.3059 4.5341 48 1 2.6900 2.6366 3.6641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:22 Heat of formation + Delta-G solvation = -74.123618 kcal Electronic energy + Delta-G solvation = -26428.550196 eV Core-core repulsion = 22904.819647 eV Total energy + Delta-G solvation = -3523.730548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17629 -38.34670 -36.77783 -34.29161 -33.01518 -32.22724 -31.88752 -29.95655 -29.24176 -28.33439 -26.65740 -24.84563 -23.13611 -22.39097 -21.96412 -20.40232 -19.62088 -18.59871 -17.27159 -16.79004 -16.10594 -15.49718 -14.97007 -14.92545 -14.87215 -14.58845 -14.32417 -13.83362 -13.64887 -13.24653 -13.00582 -12.81905 -12.51146 -12.28657 -12.13145 -11.99401 -11.87942 -11.67152 -11.56626 -11.48411 -11.37307 -11.34497 -11.28359 -11.13771 -10.84653 -10.64330 -10.59354 -10.52201 -10.49251 -10.01163 -9.39368 -9.14930 -8.67964 -8.23386 -8.08186 -7.90200 -6.28801 -4.36616 3.14728 3.21877 3.26506 3.29630 3.43925 4.09406 4.27023 4.78334 4.83865 4.91292 4.98189 5.00161 5.13348 5.18025 5.30775 5.39056 5.43503 5.52000 5.57063 5.61970 5.63912 5.67692 5.74081 5.77006 5.83027 5.92450 5.95840 5.99212 6.02059 6.11056 6.20010 6.20725 6.31326 6.36278 6.45586 6.69205 6.90932 6.96688 7.12096 7.19877 7.29997 7.34236 7.72968 8.02778 8.22612 8.65549 8.78908 9.30259 9.38949 10.78533 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.003782 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.763191 B = 7400.822323 C = 7579.702144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.152 4.152 3 C 0.071 3.929 4 H 0.098 0.902 5 C 0.532 3.468 6 O -0.539 6.539 7 N -0.609 5.609 8 C 0.098 3.902 9 C -0.136 4.136 10 C 0.249 3.751 11 O -0.582 6.582 12 C -0.536 4.536 13 H 0.064 0.936 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.902 3.098 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.123 3.877 21 N -0.515 5.515 22 C 0.029 3.971 23 C -0.148 4.148 24 C 0.053 3.947 25 C -0.142 4.142 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.380 0.620 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 3.179 7.747 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.191 4.191 3 C -0.041 4.041 4 H 0.116 0.884 5 C 0.319 3.681 6 O -0.416 6.416 7 N -0.342 5.342 8 C -0.025 4.025 9 C -0.174 4.174 10 C 0.208 3.792 11 O -0.391 6.391 12 C -0.574 4.574 13 H 0.082 0.918 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.729 3.271 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.001 3.999 21 N -0.239 5.239 22 C -0.098 4.098 23 C -0.206 4.206 24 C -0.074 4.074 25 C -0.200 4.200 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.229 0.771 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.690 3.778 8.904 16.762 hybrid contribution 0.271 -0.601 -1.496 1.635 sum -13.419 3.177 7.407 15.653 Atomic orbital electron populations 1.22067 0.95336 1.01990 1.01777 1.22155 0.96364 0.96478 1.04118 1.21658 0.93345 0.94756 0.94346 0.88390 1.19949 0.89367 0.76745 0.82029 1.90626 1.65501 1.49657 1.35784 1.48598 1.08822 1.70589 1.06205 1.22195 0.96588 0.99196 0.84478 1.23167 0.95575 1.02289 0.96390 1.19633 0.92127 0.79341 0.88056 1.86136 1.96697 1.19100 1.37138 1.21423 1.02527 1.32197 1.01258 0.91794 1.24975 0.97082 0.94062 0.96768 1.69706 1.34508 1.33720 1.15570 0.86487 0.83426 0.78710 0.78435 1.19993 1.21145 1.20044 1.22370 0.79081 0.99516 0.98940 1.61795 1.24414 1.35659 1.02018 1.22552 0.89564 0.97075 1.00603 1.21799 1.01137 0.98012 0.99651 1.22140 1.00887 0.94100 0.90308 1.21728 1.02125 1.00247 0.95867 0.92041 0.92285 0.92338 0.90389 0.90670 0.92530 0.93127 0.89612 0.91408 0.77062 0.92213 0.91186 0.91357 0.90836 0.92755 0.92557 0.92019 0.92768 0.94936 0.89896 0.93374 0.92814 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.14 37.16 0.30 -1.23 16 2 C -0.15 -1.96 4.87 -26.73 -0.13 -2.09 16 3 C 0.07 1.03 1.61 -68.87 -0.11 0.92 16 4 H 0.10 1.33 5.56 -51.93 -0.29 1.04 16 5 C 0.53 10.18 6.95 -10.99 -0.08 10.10 16 6 O -0.54 -11.97 15.43 5.56 0.09 -11.89 16 7 N -0.61 -12.07 3.32 -170.39 -0.57 -12.64 16 8 C 0.10 1.76 6.19 -3.07 -0.02 1.74 16 9 C -0.14 -2.86 5.37 -24.89 -0.13 -3.00 16 10 C 0.25 5.94 0.87 -89.50 -0.08 5.86 16 11 O -0.58 -14.59 13.17 -35.23 -0.46 -15.05 16 12 C -0.54 -13.88 8.27 -34.44 -0.28 -14.17 16 13 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 14 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 15 N -0.90 -22.73 10.76 55.43 0.60 -22.14 16 16 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.12 2.76 6.08 -2.41 -0.01 2.75 16 21 N -0.51 -6.99 3.97 -228.04 -0.91 -7.89 16 22 C 0.03 0.31 5.08 -3.83 -0.02 0.29 16 23 C -0.15 -1.51 10.02 37.16 0.37 -1.14 16 24 C 0.05 0.69 3.77 -3.83 -0.01 0.67 16 25 C -0.14 -1.65 10.03 37.16 0.37 -1.28 16 26 H 0.06 0.57 4.68 -51.93 -0.24 0.33 16 27 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.09 6.78 -51.93 -0.35 0.74 16 30 H 0.07 1.02 6.04 -51.93 -0.31 0.71 16 31 H 0.06 0.94 6.80 -51.93 -0.35 0.59 16 32 H 0.05 0.79 8.01 -51.93 -0.42 0.37 16 33 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 34 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.38 9.46 7.57 45.56 0.34 9.80 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 38 H 0.07 1.64 8.07 -51.93 -0.42 1.22 16 39 H 0.07 0.72 6.57 -51.92 -0.34 0.38 16 40 H 0.05 0.52 3.94 -51.93 -0.20 0.31 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.59 6.51 -51.93 -0.34 0.25 16 44 H 0.03 0.37 5.92 -51.93 -0.31 0.06 16 45 H 0.08 1.30 5.91 -51.93 -0.31 0.99 16 46 H 0.05 0.49 6.79 -51.93 -0.35 0.14 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -28.11 357.26 -7.99 -36.10 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -7.17 Total: 11.85 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 0.07 Total: 1.21 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.88 Total: -42.67 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.38 Total: -26.94 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.11 -7.99 -36.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.023 kcal (2) G-P(sol) polarization free energy of solvation -28.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds