Wall clock time and date at job start Tue Mar 31 2020 03:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 H 1.09003 * 109.47026 * 304.30844 * 3 2 1 5 5 C 1.50695 * 109.47392 * 184.30895 * 3 2 1 6 6 O 1.21279 * 119.99921 * 259.65286 * 5 3 2 7 7 N 1.34780 * 120.00166 * 79.65504 * 5 3 2 8 8 C 1.47020 * 125.64654 * 3.54164 * 7 5 3 9 9 C 1.54324 * 107.27001 * 181.02122 * 8 7 5 10 10 C 1.55167 * 102.93968 * 22.19695 * 9 8 7 11 11 O 1.42901 * 111.00337 * 82.57266 * 10 9 8 12 12 C 1.50697 * 111.00162 * 206.38406 * 10 9 8 13 13 H 1.07996 * 120.00430 * 118.54392 * 12 10 9 14 14 C 1.37886 * 120.00060 * 298.54413 * 12 10 9 15 15 N 1.31511 * 119.99866 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99966 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47157 * 59.99832 * 16 14 12 18 18 H 1.48496 * 109.46969 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46851 * 299.99910 * 16 14 12 20 20 C 1.47425 * 125.64478 * 183.23809 * 7 5 3 21 21 N 1.46898 * 109.46964 * 64.30380 * 3 2 1 22 22 C 1.46897 * 111.00279 * 274.75552 * 21 3 2 23 23 C 1.52996 * 109.47387 * 287.69884 * 22 21 3 24 24 C 1.46897 * 111.00033 * 38.71363 * 21 3 2 25 25 C 1.52997 * 109.47529 * 159.69878 * 24 21 3 26 26 H 1.08996 * 109.47374 * 289.21436 * 1 2 3 27 27 H 1.09001 * 109.47423 * 49.21938 * 1 2 3 28 28 H 1.09001 * 109.47230 * 169.21757 * 1 2 3 29 29 H 1.09007 * 109.47041 * 240.00391 * 2 1 3 30 30 H 1.08994 * 109.47345 * 120.00477 * 2 1 3 31 31 H 1.08996 * 109.88458 * 300.44119 * 8 7 5 32 32 H 1.08998 * 109.87884 * 61.61007 * 8 7 5 33 33 H 1.08995 * 110.71835 * 140.55329 * 9 8 7 34 34 H 1.08997 * 110.72458 * 263.65513 * 9 8 7 35 35 H 0.96696 * 114.00540 * 61.45143 * 11 10 9 36 36 H 0.97003 * 120.00012 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.36539 * 274.74101 * 20 7 5 38 38 H 1.08996 * 110.37295 * 37.07069 * 20 7 5 39 39 H 1.09008 * 109.47219 * 167.69793 * 22 21 3 40 40 H 1.09004 * 109.47065 * 47.70350 * 22 21 3 41 41 H 1.09000 * 109.46964 * 176.88057 * 23 22 21 42 42 H 1.08997 * 109.47254 * 296.87805 * 23 22 21 43 43 H 1.09003 * 109.47100 * 56.88361 * 23 22 21 44 44 H 1.09004 * 109.47068 * 279.70124 * 24 21 3 45 45 H 1.09007 * 109.46996 * 39.69593 * 24 21 3 46 46 H 1.09001 * 109.47059 * 59.99436 * 25 24 21 47 47 H 1.09000 * 109.47692 * 180.02562 * 25 24 21 48 48 H 1.09004 * 109.47146 * 300.00198 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6150 1.9781 -0.8489 5 6 3.5432 1.4438 -0.1067 6 8 4.2214 1.6071 0.8853 7 7 4.1339 1.2637 -1.3047 8 6 3.4368 1.1288 -2.5921 9 6 4.5141 0.9153 -3.6763 10 6 5.7219 0.3765 -2.8646 11 8 5.5986 -1.0284 -2.6345 12 6 7.0225 0.6957 -3.5557 13 1 7.7558 1.3189 -3.0655 14 6 7.2765 0.1920 -4.8139 15 7 6.3834 -0.5665 -5.4110 16 14 8.8890 0.5870 -5.6701 17 1 10.0209 0.0879 -4.8487 18 1 8.9160 -0.0693 -7.0019 19 1 9.0117 2.0570 -5.8406 20 6 5.5863 1.1755 -1.5419 21 7 1.6370 2.1043 1.2480 22 6 0.2803 2.6564 1.1369 23 6 0.3028 3.8853 0.2258 24 6 1.7392 1.1842 2.3886 25 6 1.8138 1.9886 3.6878 26 1 -0.3634 0.3382 0.9704 27 1 -0.3634 0.6712 -0.7782 28 1 -0.3634 -1.0095 -0.1923 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.7658 0.2704 -2.5622 32 1 2.8719 2.0364 -2.8046 33 1 4.1831 0.1796 -4.4092 34 1 4.7631 1.8580 -4.1635 35 1 5.5797 -1.5592 -3.4426 36 1 6.5619 -0.9205 -6.2964 37 1 6.0137 2.1721 -1.6525 38 1 6.0724 0.6418 -0.7253 39 1 -0.0772 2.9438 2.1258 40 1 -0.3850 1.9032 0.7148 41 1 -0.7121 4.2621 0.0988 42 1 0.9243 4.6597 0.6755 43 1 0.7123 3.6096 -0.7461 44 1 0.8630 0.5362 2.4122 45 1 2.6380 0.5761 2.2855 46 1 0.9151 2.5967 3.7908 47 1 1.8901 1.3059 4.5341 48 1 2.6900 2.6366 3.6641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:21 Heat of formation + Delta-G solvation = -93.701550 kcal Electronic energy + Delta-G solvation = -26429.399159 eV Core-core repulsion = 22904.819647 eV Total energy + Delta-G solvation = -3524.579511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51674 -39.78177 -38.36156 -36.06804 -34.21400 -34.03160 -32.76373 -31.54786 -30.41119 -29.93577 -27.94290 -26.50469 -24.23125 -23.79607 -22.90821 -21.81234 -21.20436 -19.98800 -19.10907 -18.28194 -17.30902 -16.90378 -16.72932 -16.32306 -16.12142 -16.06954 -15.62064 -15.25652 -14.84634 -14.60668 -14.28261 -14.01949 -13.96615 -13.66081 -13.43927 -13.23620 -13.12577 -13.05432 -12.99909 -12.81816 -12.67833 -12.51632 -12.46581 -12.41344 -12.26972 -12.21960 -12.11110 -11.83149 -11.60483 -11.43611 -11.26410 -10.71001 -10.56175 -10.15133 -9.53493 -9.06724 -8.23620 -6.38378 1.43419 1.45192 1.52042 1.68032 2.00096 2.40525 2.99444 3.02090 3.52543 3.80786 3.81981 3.92507 4.01390 4.09770 4.19593 4.27739 4.32031 4.35420 4.42721 4.47919 4.59474 4.60617 4.62015 4.67690 4.75086 4.75932 4.86031 4.89189 4.91240 5.05563 5.08579 5.15120 5.17099 5.19590 5.30342 5.32543 5.37189 5.44683 5.45687 5.54238 5.77317 6.05627 6.10159 6.26631 6.63746 6.70463 7.25438 7.31872 7.40536 8.81968 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.003782 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.763191 B = 7400.822323 C = 7579.702144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.115 0.885 5 C 0.523 3.477 6 O -0.578 6.578 7 N -0.612 5.612 8 C 0.106 3.894 9 C -0.125 4.125 10 C 0.237 3.763 11 O -0.592 6.592 12 C -0.565 4.565 13 H 0.052 0.948 14 C 0.040 3.960 15 N -0.904 5.904 16 Si 0.957 3.043 17 H -0.280 1.280 18 H -0.278 1.278 19 H -0.272 1.272 20 C 0.127 3.873 21 N -0.534 5.534 22 C 0.029 3.971 23 C -0.147 4.147 24 C 0.055 3.945 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.378 0.622 36 H 0.271 0.729 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 3.617 7.338 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C -0.029 4.029 4 H 0.132 0.868 5 C 0.313 3.687 6 O -0.457 6.457 7 N -0.345 5.345 8 C -0.016 4.016 9 C -0.163 4.163 10 C 0.197 3.803 11 O -0.400 6.400 12 C -0.604 4.604 13 H 0.070 0.930 14 C -0.161 4.161 15 N -0.543 5.543 16 Si 0.783 3.217 17 H -0.205 1.205 18 H -0.203 1.203 19 H -0.197 1.197 20 C 0.004 3.996 21 N -0.259 5.259 22 C -0.097 4.097 23 C -0.205 4.205 24 C -0.072 4.072 25 C -0.194 4.194 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.347 4.220 8.488 18.897 hybrid contribution 1.134 -0.747 -1.327 1.898 sum -15.214 3.473 7.162 17.170 Atomic orbital electron populations 1.22020 0.92379 1.03194 1.02794 1.22124 0.98786 0.94862 1.02955 1.21564 0.89428 0.96253 0.95630 0.86776 1.20987 0.91508 0.75298 0.80950 1.90602 1.66905 1.51246 1.36971 1.48688 1.07608 1.70798 1.07450 1.22226 0.95579 1.01599 0.82211 1.22940 0.95334 1.01324 0.96747 1.19759 0.92770 0.78784 0.88950 1.86125 1.96781 1.19945 1.37173 1.21647 1.03563 1.33027 1.02129 0.93016 1.25556 0.99688 0.93852 0.97045 1.69762 1.35345 1.33492 1.15694 0.85630 0.79925 0.78600 0.77564 1.20521 1.20254 1.19671 1.22114 0.81213 0.98729 0.97511 1.61756 1.26718 1.35848 1.01543 1.22669 0.87957 0.97450 1.01633 1.21804 1.02285 0.97436 0.98934 1.22088 1.00170 0.94221 0.90743 1.21688 1.01775 1.00185 0.95787 0.91116 0.90944 0.91244 0.91561 0.91946 0.90751 0.89848 0.90465 0.92101 0.77322 0.91921 0.91535 0.94010 0.89675 0.90948 0.90128 0.93541 0.93434 0.92712 0.93354 0.91444 0.91466 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.14 71.98 0.59 -1.78 16 2 C -0.15 -3.56 4.87 30.59 0.15 -3.41 16 3 C 0.08 2.29 1.61 44.17 0.07 2.36 16 4 H 0.11 2.77 5.56 -2.39 -0.01 2.76 16 5 C 0.52 20.14 6.95 87.66 0.61 20.75 16 6 O -0.58 -26.62 15.43 -3.03 -0.05 -26.67 16 7 N -0.61 -24.38 3.32 -811.37 -2.70 -27.08 16 8 C 0.11 3.62 6.19 86.73 0.54 4.16 16 9 C -0.12 -5.24 5.37 31.79 0.17 -5.07 16 10 C 0.24 11.58 0.87 -10.07 -0.01 11.57 16 11 O -0.59 -30.34 13.17 -148.98 -1.96 -32.31 16 12 C -0.57 -29.96 8.27 25.60 0.21 -29.75 16 13 H 0.05 2.78 7.79 -2.91 -0.02 2.76 16 14 C 0.04 2.06 5.29 84.66 0.45 2.51 16 15 N -0.90 -45.73 10.76 21.45 0.23 -45.50 16 16 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 C 0.13 5.95 6.08 86.93 0.53 6.48 16 21 N -0.53 -13.65 3.97 -875.39 -3.48 -17.12 16 22 C 0.03 0.52 5.08 86.30 0.44 0.96 16 23 C -0.15 -2.55 10.02 71.98 0.72 -1.83 16 24 C 0.06 1.37 3.77 86.30 0.33 1.70 16 25 C -0.14 -3.03 10.03 71.98 0.72 -2.31 16 26 H 0.07 1.02 4.68 -2.39 -0.01 1.01 16 27 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.74 6.78 -2.38 -0.02 1.73 16 30 H 0.06 1.66 6.04 -2.39 -0.01 1.64 16 31 H 0.07 2.31 6.80 -2.39 -0.02 2.29 16 32 H 0.08 2.35 8.01 -2.39 -0.02 2.33 16 33 H 0.08 3.36 7.54 -2.39 -0.02 3.35 16 34 H 0.06 2.60 8.04 -2.39 -0.02 2.58 16 35 H 0.38 19.19 7.57 -74.06 -0.56 18.63 16 36 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 37 H 0.07 3.09 8.04 -2.39 -0.02 3.07 16 38 H 0.04 2.12 8.07 -2.39 -0.02 2.10 16 39 H 0.08 1.35 6.57 -2.38 -0.02 1.33 16 40 H 0.07 1.06 3.94 -2.38 -0.01 1.05 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.88 6.51 -2.39 -0.02 0.87 16 44 H 0.05 1.10 5.92 -2.39 -0.01 1.09 16 45 H 0.05 1.54 5.91 -2.38 -0.01 1.53 16 46 H 0.07 1.22 6.79 -2.39 -0.02 1.20 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -62.34 357.26 -0.02 -62.36 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.40 Total: 36.80 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.51 Total: 6.33 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -5.94 Total: -89.70 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -2.01 Total: -58.98 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -62.34 -0.02 -62.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.343 kcal (2) G-P(sol) polarization free energy of solvation -62.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds