Wall clock time and date at job start Tue Mar 31 2020 03:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34232 * 116.99843 * 2 1 4 4 O 1.20820 * 120.00216 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99653 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46796 * 179.97438 * 5 3 2 7 7 C 1.36934 * 119.99879 * 90.00348 * 6 5 3 8 8 H 1.08003 * 120.00110 * 157.81912 * 7 6 5 9 9 C 1.38812 * 120.00141 * 337.81590 * 7 6 5 10 10 N 1.31622 * 119.99969 * 7.72237 * 9 7 6 11 11 Si 1.86797 * 120.00142 * 187.72511 * 9 7 6 12 12 H 1.48494 * 109.47553 * 90.00059 * 11 9 7 13 13 H 1.48505 * 109.47315 * 210.00165 * 11 9 7 14 14 H 1.48499 * 109.47031 * 329.99780 * 11 9 7 15 15 C 1.46505 * 120.00230 * 270.00227 * 6 5 3 16 16 C 1.52993 * 109.47185 * 94.32222 * 15 6 5 17 17 N 1.46901 * 109.47350 * 180.02562 * 16 15 6 18 18 C 1.46846 * 110.99466 * 294.21098 * 17 16 15 19 19 C 1.53044 * 109.51754 * 174.15969 * 18 17 16 20 20 H 1.08996 * 109.50756 * 299.23112 * 19 18 17 21 21 C 1.53001 * 109.53184 * 179.13669 * 19 18 17 22 22 C 1.53119 * 109.28042 * 59.18097 * 19 18 17 23 23 C 1.53119 * 109.15784 * 302.33995 * 22 19 18 24 24 H 1.08997 * 109.50600 * 297.72007 * 23 22 19 25 25 C 1.53000 * 109.50644 * 177.59551 * 23 22 19 26 26 C 1.46844 * 111.00286 * 170.00015 * 17 16 15 27 27 H 1.08997 * 109.47329 * 300.00327 * 1 2 3 28 28 H 1.08997 * 109.47081 * 60.00531 * 1 2 3 29 29 H 1.09009 * 109.47251 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47449 * 60.00450 * 5 3 2 31 31 H 1.08995 * 109.47787 * 299.99975 * 5 3 2 32 32 H 0.96993 * 120.00353 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.46910 * 214.32151 * 15 6 5 34 34 H 1.09001 * 109.46892 * 334.31867 * 15 6 5 35 35 H 1.09001 * 109.47139 * 299.99789 * 16 15 6 36 36 H 1.09001 * 109.47496 * 60.00014 * 16 15 6 37 37 H 1.08994 * 109.46198 * 294.16806 * 18 17 16 38 38 H 1.08998 * 109.46795 * 54.14655 * 18 17 16 39 39 H 1.08999 * 109.47516 * 300.17967 * 21 19 18 40 40 H 1.09003 * 109.47111 * 60.17772 * 21 19 18 41 41 H 1.09003 * 109.47240 * 180.17988 * 21 19 18 42 42 H 1.08996 * 109.52343 * 182.44092 * 22 19 18 43 43 H 1.08995 * 109.57678 * 62.28095 * 22 19 18 44 44 H 1.09004 * 109.46668 * 300.20384 * 25 23 22 45 45 H 1.08999 * 109.46407 * 60.19662 * 25 23 22 46 46 H 1.08999 * 109.47430 * 180.19577 * 25 23 22 47 47 H 1.09005 * 109.46140 * 305.85029 * 26 17 16 48 48 H 1.08993 * 109.46457 * 65.81868 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6797 -0.0002 7 6 4.1753 3.3370 1.1854 8 1 4.8031 4.2152 1.2197 9 6 3.5646 2.8748 2.3431 10 7 2.9256 1.7241 2.3357 11 14 3.6498 3.8857 3.9116 12 1 2.4906 4.8122 3.9670 13 1 3.6155 2.9792 5.0873 14 1 4.9111 4.6694 3.9275 15 6 4.1898 3.3815 -1.2693 16 6 2.9096 4.1238 -1.6575 17 7 3.1181 4.8269 -2.9304 18 6 4.1165 5.8939 -2.7847 19 6 4.4143 6.5061 -4.1553 20 1 4.8146 5.7385 -4.8176 21 6 5.4385 7.6322 -4.0009 22 6 3.1205 7.0699 -4.7492 23 6 2.0816 5.9491 -4.8453 24 1 2.4451 5.1727 -5.5184 25 6 0.7660 6.5166 -5.3819 26 6 1.8514 5.3530 -3.4547 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7810 0.8907 32 1 2.4992 1.4009 3.1447 33 1 5.0053 4.0963 -1.1596 34 1 4.4413 2.6597 -2.0464 35 1 2.0941 3.4090 -1.7672 36 1 2.6581 4.8455 -0.8804 37 1 3.7293 6.6651 -2.1189 38 1 5.0331 5.4789 -2.3654 39 1 5.0384 8.3989 -3.3374 40 1 6.3594 7.2304 -3.5781 41 1 5.6475 8.0697 -4.9772 42 1 3.3196 7.4682 -5.7440 43 1 2.7403 7.8650 -4.1078 44 1 0.4044 7.2942 -4.7090 45 1 0.9307 6.9411 -6.3723 46 1 0.0258 5.7191 -5.4469 47 1 1.1227 4.5451 -3.5220 48 1 1.4748 6.1267 -2.7857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595340481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:25 Heat of formation + Delta-G solvation = -70.780171 kcal Electronic energy + Delta-G solvation = -26106.950983 eV Core-core repulsion = 22583.365418 eV Total energy + Delta-G solvation = -3523.585566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.22513 -38.83586 -36.19744 -34.67254 -33.97243 -33.38939 -31.33779 -28.70594 -27.40370 -26.60752 -26.37465 -25.93045 -24.18874 -22.04702 -20.82748 -20.15173 -19.56758 -19.48922 -16.95001 -16.15042 -15.76082 -15.28818 -15.07215 -15.02794 -14.75501 -14.51735 -14.33950 -13.85886 -13.54349 -13.25811 -12.69445 -12.60070 -12.52192 -12.27773 -12.26497 -12.06921 -11.94028 -11.74424 -11.48396 -11.20785 -11.05121 -10.96621 -10.91495 -10.69365 -10.58315 -10.44550 -10.19960 -10.14615 -10.10465 -9.92586 -9.71268 -9.49068 -9.01699 -8.56286 -7.83313 -6.98829 -5.90414 -3.32572 3.34810 3.41428 3.42445 3.95443 4.10750 4.24875 4.49953 4.74724 4.91451 4.95583 5.10408 5.35424 5.44019 5.47322 5.51328 5.60588 5.64996 5.67299 5.77939 5.82034 5.83333 5.89101 5.90262 5.92824 5.95615 6.00882 6.09125 6.10937 6.16875 6.21811 6.30360 6.36271 6.41017 6.42150 6.55546 6.57127 6.73183 6.83516 7.08247 7.31202 7.58236 7.62742 7.69211 7.85401 8.27263 9.05587 9.46984 9.71820 10.14988 11.16615 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.004802 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.802847 B = 5829.139911 C = 7026.342686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.381 6.381 3 C 0.469 3.531 4 O -0.519 6.519 5 C 0.191 3.809 6 N -0.572 5.572 7 C -0.244 4.244 8 H 0.077 0.923 9 C 0.007 3.993 10 N -0.914 5.914 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.153 3.847 16 C 0.040 3.960 17 N -0.541 5.541 18 C 0.059 3.941 19 C -0.090 4.090 20 H 0.076 0.924 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.089 4.089 24 H 0.076 0.924 25 C -0.145 4.145 26 C 0.063 3.937 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.130 0.870 32 H 0.258 0.742 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.027 0.973 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 4.777 -12.739 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.298 6.298 3 C 0.310 3.690 4 O -0.405 6.405 5 C 0.062 3.938 6 N -0.292 5.292 7 C -0.373 4.373 8 H 0.095 0.905 9 C -0.190 4.190 10 N -0.561 5.561 11 Si 0.743 3.257 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.205 1.205 15 C 0.026 3.974 16 C -0.089 4.089 17 N -0.266 5.266 18 C -0.069 4.069 19 C -0.109 4.109 20 H 0.095 0.905 21 C -0.203 4.203 22 C -0.146 4.146 23 C -0.108 4.108 24 H 0.095 0.905 25 C -0.203 4.203 26 C -0.065 4.065 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.133 4.677 -12.896 13.719 hybrid contribution -1.067 1.298 1.708 2.395 sum -1.200 5.975 -11.189 12.741 Atomic orbital electron populations 1.22817 0.80229 1.01157 1.00984 1.86555 1.20600 1.36914 1.85764 1.25547 0.93651 0.79998 0.69785 1.90425 1.66831 1.36455 1.46831 1.20474 0.85196 0.86426 1.01745 1.43955 1.76313 1.07227 1.01681 1.19286 1.23114 1.09767 0.85100 0.90489 1.24964 0.97713 0.97303 0.98987 1.69633 1.39409 1.19044 1.27978 0.86113 0.77727 0.79545 0.82290 1.21556 1.21654 1.20475 1.20945 0.94327 0.94767 0.87333 1.22930 1.01424 0.97441 0.87070 1.62029 1.08575 1.26453 1.29508 1.22150 0.96628 0.92674 0.95446 1.21175 0.95083 0.97279 0.97330 0.90530 1.21788 0.98942 0.98292 1.01280 1.21684 0.95087 0.97474 1.00319 1.21170 0.95057 0.97580 0.97020 0.90546 1.21791 0.97179 1.00831 1.00503 1.22059 0.91959 0.97982 0.94506 0.93173 0.93782 0.90258 0.93909 0.85303 0.93132 0.93515 0.93314 0.90510 0.94898 0.95493 0.90394 0.92975 0.92501 0.92869 0.92324 0.92534 0.92968 0.92795 0.92667 0.91281 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.38 -8.46 10.57 -39.26 -0.41 -8.88 16 3 C 0.47 11.53 5.92 36.01 0.21 11.75 16 4 O -0.52 -14.04 13.64 -18.75 -0.26 -14.30 16 5 C 0.19 4.51 5.58 -5.19 -0.03 4.48 16 6 N -0.57 -13.91 2.07 -174.61 -0.36 -14.27 16 7 C -0.24 -6.47 9.70 -15.06 -0.15 -6.62 16 8 H 0.08 2.00 7.84 -52.48 -0.41 1.59 16 9 C 0.01 0.19 5.41 -17.43 -0.09 0.09 16 10 N -0.91 -25.46 8.21 55.49 0.46 -25.00 16 11 Si 0.91 21.93 29.56 -169.99 -5.02 16.90 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.15 3.18 5.64 -4.04 -0.02 3.16 16 16 C 0.04 0.83 4.70 -3.83 -0.02 0.81 16 17 N -0.54 -9.12 4.66 -234.67 -1.09 -10.22 16 18 C 0.06 0.89 4.58 -3.83 -0.02 0.88 16 19 C -0.09 -1.09 2.88 -90.53 -0.26 -1.35 16 20 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 21 C -0.15 -1.51 9.20 37.16 0.34 -1.17 16 22 C -0.11 -1.23 4.57 -26.61 -0.12 -1.36 16 23 C -0.09 -1.09 2.88 -90.54 -0.26 -1.35 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.15 -1.51 9.20 37.16 0.34 -1.16 16 26 C 0.06 0.97 4.74 -3.83 -0.02 0.95 16 27 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 29 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 31 H 0.13 3.29 6.24 -51.93 -0.32 2.97 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.05 0.94 6.36 -51.93 -0.33 0.61 16 34 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 35 H 0.08 1.76 6.23 -51.93 -0.32 1.43 16 36 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 1.21 6.21 -51.93 -0.32 0.89 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 48 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -29.57 370.74 -8.97 -38.55 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.84 Total: 0.67 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 0.97 Total: 10.96 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -1.00 Total: -49.49 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.67 Total: -23.17 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.57 -8.97 -38.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.233 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds