Wall clock time and date at job start Tue Mar 31 2020 03:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34232 * 116.99843 * 2 1 4 4 O 1.20820 * 120.00216 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99653 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46796 * 179.97438 * 5 3 2 7 7 C 1.36934 * 119.99879 * 90.00348 * 6 5 3 8 8 H 1.08003 * 120.00110 * 157.81912 * 7 6 5 9 9 C 1.38812 * 120.00141 * 337.81590 * 7 6 5 10 10 N 1.31622 * 119.99969 * 7.72237 * 9 7 6 11 11 Si 1.86797 * 120.00142 * 187.72511 * 9 7 6 12 12 H 1.48494 * 109.47553 * 90.00059 * 11 9 7 13 13 H 1.48505 * 109.47315 * 210.00165 * 11 9 7 14 14 H 1.48499 * 109.47031 * 329.99780 * 11 9 7 15 15 C 1.46505 * 120.00230 * 270.00227 * 6 5 3 16 16 C 1.52993 * 109.47185 * 94.32222 * 15 6 5 17 17 N 1.46901 * 109.47350 * 180.02562 * 16 15 6 18 18 C 1.46846 * 110.99466 * 294.21098 * 17 16 15 19 19 C 1.53044 * 109.51754 * 174.15969 * 18 17 16 20 20 H 1.08996 * 109.50756 * 299.23112 * 19 18 17 21 21 C 1.53001 * 109.53184 * 179.13669 * 19 18 17 22 22 C 1.53119 * 109.28042 * 59.18097 * 19 18 17 23 23 C 1.53119 * 109.15784 * 302.33995 * 22 19 18 24 24 H 1.08997 * 109.50600 * 297.72007 * 23 22 19 25 25 C 1.53000 * 109.50644 * 177.59551 * 23 22 19 26 26 C 1.46844 * 111.00286 * 170.00015 * 17 16 15 27 27 H 1.08997 * 109.47329 * 300.00327 * 1 2 3 28 28 H 1.08997 * 109.47081 * 60.00531 * 1 2 3 29 29 H 1.09009 * 109.47251 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47449 * 60.00450 * 5 3 2 31 31 H 1.08995 * 109.47787 * 299.99975 * 5 3 2 32 32 H 0.96993 * 120.00353 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.46910 * 214.32151 * 15 6 5 34 34 H 1.09001 * 109.46892 * 334.31867 * 15 6 5 35 35 H 1.09001 * 109.47139 * 299.99789 * 16 15 6 36 36 H 1.09001 * 109.47496 * 60.00014 * 16 15 6 37 37 H 1.08994 * 109.46198 * 294.16806 * 18 17 16 38 38 H 1.08998 * 109.46795 * 54.14655 * 18 17 16 39 39 H 1.08999 * 109.47516 * 300.17967 * 21 19 18 40 40 H 1.09003 * 109.47111 * 60.17772 * 21 19 18 41 41 H 1.09003 * 109.47240 * 180.17988 * 21 19 18 42 42 H 1.08996 * 109.52343 * 182.44092 * 22 19 18 43 43 H 1.08995 * 109.57678 * 62.28095 * 22 19 18 44 44 H 1.09004 * 109.46668 * 300.20384 * 25 23 22 45 45 H 1.08999 * 109.46407 * 60.19662 * 25 23 22 46 46 H 1.08999 * 109.47430 * 180.19577 * 25 23 22 47 47 H 1.09005 * 109.46140 * 305.85029 * 26 17 16 48 48 H 1.08993 * 109.46457 * 65.81868 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6797 -0.0002 7 6 4.1753 3.3370 1.1854 8 1 4.8031 4.2152 1.2197 9 6 3.5646 2.8748 2.3431 10 7 2.9256 1.7241 2.3357 11 14 3.6498 3.8857 3.9116 12 1 2.4906 4.8122 3.9670 13 1 3.6155 2.9792 5.0873 14 1 4.9111 4.6694 3.9275 15 6 4.1898 3.3815 -1.2693 16 6 2.9096 4.1238 -1.6575 17 7 3.1181 4.8269 -2.9304 18 6 4.1165 5.8939 -2.7847 19 6 4.4143 6.5061 -4.1553 20 1 4.8146 5.7385 -4.8176 21 6 5.4385 7.6322 -4.0009 22 6 3.1205 7.0699 -4.7492 23 6 2.0816 5.9491 -4.8453 24 1 2.4451 5.1727 -5.5184 25 6 0.7660 6.5166 -5.3819 26 6 1.8514 5.3530 -3.4547 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7810 0.8907 32 1 2.4992 1.4009 3.1447 33 1 5.0053 4.0963 -1.1596 34 1 4.4413 2.6597 -2.0464 35 1 2.0941 3.4090 -1.7672 36 1 2.6581 4.8455 -0.8804 37 1 3.7293 6.6651 -2.1189 38 1 5.0331 5.4789 -2.3654 39 1 5.0384 8.3989 -3.3374 40 1 6.3594 7.2304 -3.5781 41 1 5.6475 8.0697 -4.9772 42 1 3.3196 7.4682 -5.7440 43 1 2.7403 7.8650 -4.1078 44 1 0.4044 7.2942 -4.7090 45 1 0.9307 6.9411 -6.3723 46 1 0.0258 5.7191 -5.4469 47 1 1.1227 4.5451 -3.5220 48 1 1.4748 6.1267 -2.7857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595340481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:24 Heat of formation + Delta-G solvation = -87.037601 kcal Electronic energy + Delta-G solvation = -26107.655958 eV Core-core repulsion = 22583.365418 eV Total energy + Delta-G solvation = -3524.290541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81441 -40.32780 -37.95881 -36.47057 -35.49272 -34.37820 -33.24553 -30.41396 -29.08636 -27.68394 -27.56187 -27.43892 -25.79739 -23.68634 -22.09213 -21.62319 -21.31095 -20.59885 -18.90445 -18.02078 -17.49469 -16.96371 -16.63015 -16.44884 -16.34395 -15.85897 -15.53282 -15.32475 -15.09543 -14.83864 -14.10954 -14.04733 -13.79969 -13.68597 -13.53842 -13.32481 -13.20068 -13.00430 -12.88937 -12.79693 -12.70269 -12.65408 -12.45715 -12.24514 -12.03608 -12.00124 -11.70220 -11.62395 -11.42800 -11.31016 -11.13773 -11.08473 -10.92393 -10.58625 -9.29581 -8.94092 -7.95831 -5.38348 1.40742 1.45125 1.51147 2.05509 2.34129 2.52390 2.89399 3.30697 3.66775 3.78681 3.87824 3.95888 4.07976 4.27601 4.38940 4.39265 4.44453 4.45624 4.51874 4.55812 4.62478 4.67797 4.70632 4.71582 4.76869 4.80584 4.84209 4.89180 4.95805 5.00055 5.06453 5.10796 5.12253 5.23485 5.28290 5.34010 5.37682 5.40866 5.44710 5.55832 5.59344 5.98939 6.13440 6.22974 6.30630 7.03403 7.54134 7.77719 8.14737 9.08420 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.004802 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.802847 B = 5829.139911 C = 7026.342686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.385 6.385 3 C 0.470 3.530 4 O -0.551 6.551 5 C 0.189 3.811 6 N -0.585 5.585 7 C -0.249 4.249 8 H 0.078 0.922 9 C -0.042 4.042 10 N -0.931 5.931 11 Si 0.967 3.033 12 H -0.303 1.303 13 H -0.290 1.290 14 H -0.264 1.264 15 C 0.156 3.844 16 C 0.063 3.937 17 N -0.536 5.536 18 C 0.058 3.942 19 C -0.084 4.084 20 H 0.079 0.921 21 C -0.141 4.141 22 C -0.105 4.105 23 C -0.083 4.083 24 H 0.078 0.922 25 C -0.141 4.141 26 C 0.061 3.939 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.249 0.751 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.051 0.949 36 H -0.007 1.007 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 5.387 -14.721 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.302 6.302 3 C 0.313 3.687 4 O -0.440 6.440 5 C 0.060 3.940 6 N -0.305 5.305 7 C -0.378 4.378 8 H 0.096 0.904 9 C -0.236 4.236 10 N -0.579 5.579 11 Si 0.796 3.204 12 H -0.231 1.231 13 H -0.216 1.216 14 H -0.188 1.188 15 C 0.030 3.970 16 C -0.067 4.067 17 N -0.261 5.261 18 C -0.070 4.070 19 C -0.103 4.103 20 H 0.098 0.902 21 C -0.199 4.199 22 C -0.143 4.143 23 C -0.101 4.101 24 H 0.097 0.903 25 C -0.199 4.199 26 C -0.067 4.067 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.011 0.989 37 H 0.030 0.970 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 0.519 5.283 -14.905 15.822 hybrid contribution -1.310 1.067 2.270 2.830 sum -0.791 6.349 -12.635 14.162 Atomic orbital electron populations 1.23112 0.77870 1.04006 1.00418 1.86506 1.22890 1.35572 1.85258 1.25657 0.94083 0.80079 0.68886 1.90411 1.67625 1.37603 1.48340 1.20469 0.84916 0.86338 1.02260 1.44111 1.76410 1.07766 1.02199 1.19519 1.22696 1.09515 0.86097 0.90439 1.25595 0.98204 0.98253 1.01522 1.69800 1.40297 1.19942 1.27832 0.85263 0.77557 0.78104 0.79479 1.23103 1.21647 1.18845 1.21009 0.94392 0.95128 0.86422 1.22511 1.00325 0.96163 0.87706 1.62060 1.09709 1.27405 1.26907 1.22245 0.95533 0.91719 0.97497 1.21152 0.96156 0.97877 0.95081 0.90214 1.21757 0.98225 0.97457 1.02438 1.21690 0.94150 0.96874 1.01562 1.21141 0.96566 0.97904 0.94533 0.90326 1.21763 0.95966 1.00727 1.01444 1.22152 0.90943 0.97258 0.96339 0.94948 0.93177 0.85691 0.90651 0.87224 0.94106 0.92746 0.91504 0.93046 0.98855 0.96994 0.90882 0.93273 0.92424 0.90811 0.89754 0.92966 0.93212 0.90636 0.92732 0.92440 0.97011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 10.56 113.37 1.20 2.63 16 2 O -0.39 -17.00 10.57 -51.43 -0.54 -17.54 16 3 C 0.47 23.40 5.92 71.24 0.42 23.82 16 4 O -0.55 -30.59 13.64 21.98 0.30 -30.29 16 5 C 0.19 8.99 5.58 85.63 0.48 9.47 16 6 N -0.58 -28.73 2.07 -706.34 -1.46 -30.19 16 7 C -0.25 -13.38 9.70 84.03 0.81 -12.56 16 8 H 0.08 4.06 7.84 -2.91 -0.02 4.04 16 9 C -0.04 -2.30 5.41 84.86 0.46 -1.84 16 10 N -0.93 -52.91 8.21 21.65 0.18 -52.73 16 11 Si 0.97 45.75 29.56 68.60 2.03 47.78 16 12 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 15 C 0.16 6.50 5.64 86.38 0.49 6.99 16 16 C 0.06 2.67 4.70 86.30 0.41 3.07 16 17 N -0.54 -18.17 4.66 -896.38 -4.17 -22.34 16 18 C 0.06 1.73 4.58 86.33 0.40 2.12 16 19 C -0.08 -1.87 2.88 -10.74 -0.03 -1.90 16 20 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 21 C -0.14 -2.58 9.20 71.98 0.66 -1.91 16 22 C -0.11 -2.14 4.57 30.67 0.14 -2.00 16 23 C -0.08 -1.88 2.88 -10.74 -0.03 -1.91 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 C -0.14 -2.63 9.20 71.98 0.66 -1.97 16 26 C 0.06 1.89 4.74 86.33 0.41 2.30 16 27 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 28 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 29 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 30 H 0.08 3.04 7.86 -2.39 -0.02 3.02 16 31 H 0.11 5.69 6.24 -2.39 -0.01 5.67 16 32 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.05 2.17 6.36 -2.39 -0.02 2.15 16 34 H 0.07 2.53 7.84 -2.39 -0.02 2.51 16 35 H 0.05 2.44 6.23 -2.39 -0.01 2.42 16 36 H -0.01 -0.34 8.12 -2.39 -0.02 -0.36 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.07 2.23 6.21 -2.39 -0.01 2.21 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.88 8.02 -2.38 -0.02 1.86 16 48 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -65.11 370.74 3.70 -61.42 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.90 Total: 17.59 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 6.47 Total: 26.31 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -5.46 Total: -105.26 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.24 Total: -47.84 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -65.11 3.70 -61.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.621 kcal (2) G-P(sol) polarization free energy of solvation -65.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds