Wall clock time and date at job start Tue Mar 31 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00681 * 2 1 4 4 C 1.46903 * 111.00194 * 123.95787 * 2 1 3 5 5 C 1.53004 * 109.47063 * 66.03938 * 4 2 1 6 6 C 1.53003 * 109.47165 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47143 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99800 * 179.97438 * 7 6 5 9 9 O 1.21585 * 119.99945 * 354.92544 * 8 7 6 10 10 N 1.34774 * 119.99512 * 174.91709 * 8 7 6 11 11 C 1.47089 * 120.87764 * 184.71885 * 10 8 7 12 12 C 1.53697 * 108.27240 * 128.75787 * 11 10 8 13 13 N 1.46892 * 109.25956 * 54.08284 * 12 11 10 14 14 C 1.46904 * 111.00471 * 172.60343 * 13 12 11 15 15 C 1.50697 * 109.47052 * 294.30748 * 14 13 12 16 16 H 1.08003 * 120.00232 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99923 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00213 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00042 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47283 * 89.99637 * 19 17 15 21 21 H 1.48502 * 109.47258 * 209.99643 * 19 17 15 22 22 H 1.48498 * 109.46901 * 329.99821 * 19 17 15 23 23 C 1.46894 * 111.27143 * 296.75638 * 13 12 11 24 24 C 1.47077 * 120.88564 * 5.00095 * 10 8 7 25 25 H 1.09000 * 109.46898 * 296.04772 * 1 2 3 26 26 H 1.08996 * 109.47193 * 56.04191 * 1 2 3 27 27 H 1.08999 * 109.47635 * 176.04208 * 1 2 3 28 28 H 1.08997 * 109.47444 * 183.95804 * 3 2 1 29 29 H 1.09005 * 109.46912 * 303.95833 * 3 2 1 30 30 H 1.09002 * 109.46955 * 63.95087 * 3 2 1 31 31 H 1.08998 * 109.46886 * 306.04741 * 4 2 1 32 32 H 1.08988 * 109.47255 * 186.04123 * 4 2 1 33 33 H 1.09005 * 109.47199 * 60.00349 * 5 4 2 34 34 H 1.09002 * 109.47170 * 300.00375 * 5 4 2 35 35 H 1.09002 * 109.47038 * 300.00033 * 6 5 4 36 36 H 1.08991 * 109.46955 * 59.99910 * 6 5 4 37 37 H 0.97000 * 119.99542 * 359.97438 * 7 6 5 38 38 H 1.08998 * 109.62971 * 248.52601 * 11 10 8 39 39 H 1.08999 * 109.62599 * 9.10699 * 11 10 8 40 40 H 1.09003 * 109.65098 * 294.07535 * 12 11 10 41 41 H 1.09003 * 109.41717 * 173.95198 * 12 11 10 42 42 H 1.09006 * 109.46642 * 54.30014 * 14 13 12 43 43 H 1.08994 * 109.47588 * 174.29884 * 14 13 12 44 44 H 0.96993 * 119.99943 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.49237 * 303.13907 * 23 13 12 46 46 H 1.09000 * 109.49692 * 183.06355 * 23 13 12 47 47 H 1.08995 * 109.62941 * 350.89475 * 24 10 8 48 48 H 1.09002 * 109.63207 * 111.47414 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6313 -2.2427 0.9703 6 6 2.1791 -3.0405 2.1553 7 7 1.8310 -4.4545 1.9949 8 6 2.2126 -5.3521 2.9249 9 8 2.9235 -5.0058 3.8485 10 7 1.8061 -6.6337 2.8312 11 6 2.1246 -7.6059 3.8880 12 6 0.8226 -8.3081 4.3050 13 7 0.1753 -8.8754 3.1147 14 6 -0.9789 -9.7042 3.4874 15 6 -0.5038 -10.9106 4.2555 16 1 0.5501 -11.0481 4.4472 17 6 -1.4147 -11.8388 4.7136 18 7 -2.6982 -11.6711 4.4806 19 14 -0.8258 -13.3345 5.6651 20 1 -0.7940 -13.0176 7.1156 21 1 -1.7533 -14.4696 5.4267 22 1 0.5380 -13.7055 5.2095 23 6 -0.2165 -7.8224 2.1683 24 6 1.0376 -7.0987 1.6666 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3430 -0.0709 29 1 1.5899 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5611 -0.3874 2.0627 32 1 3.0796 -0.6613 1.1755 33 1 2.0656 -2.6215 0.0450 34 1 0.5470 -2.3475 0.9323 35 1 3.2634 -2.9357 2.1937 36 1 1.7445 -2.6616 3.0803 37 1 1.3258 -4.7445 1.2192 38 1 2.8348 -8.3402 3.5081 39 1 2.5533 -7.0872 4.7455 40 1 0.1524 -7.5886 4.7754 41 1 1.0517 -9.1072 5.0102 42 1 -1.6585 -9.1218 4.1097 43 1 -1.4993 -10.0288 2.5865 44 1 -3.3389 -12.3239 4.8032 45 1 -0.8723 -7.1096 2.6684 46 1 -0.7411 -8.2691 1.3237 47 1 0.7473 -6.2447 1.0547 48 1 1.6453 -7.7853 1.0771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601543690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:22 Heat of formation + Delta-G solvation = -34.928997 kcal Electronic energy + Delta-G solvation = -24367.082207 eV Core-core repulsion = 20877.344016 eV Total energy + Delta-G solvation = -3489.738191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.211 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45258 -39.24244 -38.64179 -36.26387 -35.97924 -34.39256 -32.75884 -31.80087 -29.94206 -28.47765 -27.57921 -26.72615 -24.66144 -23.98090 -23.43328 -22.20866 -21.85029 -20.41010 -19.12435 -18.48996 -17.48587 -17.07859 -16.79852 -16.43209 -16.34195 -15.98984 -15.68098 -15.62291 -15.36320 -15.29041 -15.13728 -14.91307 -14.37496 -14.02676 -13.58820 -13.40042 -13.30414 -13.09834 -12.89796 -12.73768 -12.65598 -12.58514 -12.42506 -12.33973 -12.32114 -12.25796 -12.14111 -11.74694 -11.66785 -11.37663 -11.16038 -10.61662 -10.26228 -9.59213 -9.32949 -9.03716 -8.20422 -6.30014 1.42969 1.43452 1.55194 1.58777 2.09053 2.41032 2.80402 3.07328 3.12117 3.24006 3.92807 3.95389 4.03502 4.05639 4.13472 4.18254 4.26059 4.33320 4.43855 4.48187 4.52113 4.56730 4.62495 4.66725 4.72673 4.77260 4.80313 4.85826 4.95182 5.02531 5.02873 5.03421 5.16582 5.16930 5.20096 5.23925 5.44616 5.49572 5.64470 5.92264 6.03998 6.06155 6.07922 6.26280 6.58851 6.85577 6.92739 7.39691 7.50240 8.90599 Molecular weight = 298.21amu Principal moments of inertia in cm(-1) A = 0.033231 B = 0.002352 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.375234 B =11902.120166 C =12449.716814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.559 5.559 3 C 0.023 3.977 4 C 0.058 3.942 5 C -0.114 4.114 6 C 0.142 3.858 7 N -0.735 5.735 8 C 0.703 3.297 9 O -0.635 6.635 10 N -0.629 5.629 11 C 0.145 3.855 12 C 0.057 3.943 13 N -0.538 5.538 14 C 0.208 3.792 15 C -0.523 4.523 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.037 3.963 24 C 0.127 3.873 25 H 0.024 0.976 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.409 0.591 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.009 0.991 41 H 0.080 0.920 42 H -0.042 1.042 43 H 0.012 0.988 44 H 0.264 0.736 45 H 0.018 0.982 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 22.431 -11.147 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.283 5.283 3 C -0.125 4.125 4 C -0.070 4.070 5 C -0.152 4.152 6 C 0.017 3.983 7 N -0.393 5.393 8 C 0.405 3.595 9 O -0.517 6.517 10 N -0.366 5.366 11 C 0.022 3.978 12 C -0.072 4.072 13 N -0.263 5.263 14 C 0.082 3.918 15 C -0.561 4.561 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.092 4.092 24 C 0.004 3.996 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.248 0.752 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.027 0.973 41 H 0.098 0.902 42 H -0.024 1.024 43 H 0.030 0.970 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.108 0.892 47 H 0.128 0.872 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.828 22.112 -11.140 26.286 hybrid contribution -1.453 -0.160 1.568 2.143 sum 7.376 21.952 -9.572 25.058 Atomic orbital electron populations 1.22499 0.86878 1.02887 1.00759 1.61983 1.08670 1.14631 1.43039 1.22428 1.01157 0.88080 1.00885 1.22000 1.00791 0.92796 0.91452 1.21653 1.01947 0.94014 0.97565 1.21131 1.00108 0.78335 0.98694 1.45142 1.60801 1.07585 1.25778 1.15988 0.80048 0.80867 0.82620 1.90858 1.43805 1.79625 1.37446 1.47425 1.57721 1.07786 1.23659 1.21586 0.95742 0.89948 0.90564 1.22369 0.94868 0.97059 0.92919 1.61991 1.29390 1.20668 1.14244 1.19378 0.87001 0.91317 0.94068 1.21472 0.93880 1.06609 1.34152 0.91628 1.25902 0.94887 1.01528 0.97370 1.70077 1.02212 1.37510 1.47660 0.85393 0.78433 0.78264 0.78592 1.20108 1.20847 1.18745 1.22532 0.96661 0.92958 0.97030 1.21857 0.91566 0.99331 0.86838 0.95758 0.90685 0.90731 0.90846 0.90572 0.95606 0.94694 0.90024 0.89702 0.90581 0.92147 0.93019 0.75237 0.90265 0.89716 0.97275 0.90166 1.02443 0.97000 0.92728 0.96338 0.89152 0.87193 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.32 127.69 1.19 1.39 16 2 N -0.56 -7.12 5.02 -948.88 -4.76 -11.88 16 3 C 0.02 0.23 9.57 127.69 1.22 1.45 16 4 C 0.06 0.72 4.96 86.30 0.43 1.15 16 5 C -0.11 -1.40 5.25 30.60 0.16 -1.24 16 6 C 0.14 2.57 5.68 86.38 0.49 3.06 16 7 N -0.73 -15.42 5.47 -478.54 -2.62 -18.03 16 8 C 0.70 21.15 8.31 179.06 1.49 22.64 16 9 O -0.64 -24.13 15.83 -3.98 -0.06 -24.20 16 10 N -0.63 -18.50 3.00 -835.04 -2.51 -21.01 16 11 C 0.15 4.79 6.61 86.50 0.57 5.36 16 12 C 0.06 2.24 5.47 86.54 0.47 2.71 16 13 N -0.54 -22.34 4.62 -898.90 -4.15 -26.49 16 14 C 0.21 10.86 4.72 85.56 0.40 11.27 16 15 C -0.52 -29.08 8.41 25.60 0.22 -28.86 16 16 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 17 C 0.00 0.07 5.46 84.65 0.46 0.53 16 18 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 19 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 C 0.04 1.20 5.62 86.38 0.49 1.69 16 24 C 0.13 3.05 6.59 86.35 0.57 3.61 16 25 H 0.02 0.27 8.14 -2.39 -0.02 0.26 16 26 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 27 H 0.07 0.78 6.47 -2.39 -0.02 0.76 16 28 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 29 H 0.08 0.65 8.12 -2.38 -0.02 0.63 16 30 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.03 0.46 8.12 -2.39 -0.02 0.44 16 32 H 0.08 0.97 8.06 -2.39 -0.02 0.95 16 33 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 0.88 6.55 -2.39 -0.02 0.86 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.41 6.25 5.97 -92.71 -0.55 5.70 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.08 2.87 7.09 -2.39 -0.02 2.86 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.08 3.38 6.67 -2.39 -0.02 3.37 16 42 H -0.04 -2.43 8.12 -2.38 -0.02 -2.45 16 43 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 44 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 2.74 7.99 -2.39 -0.02 2.72 16 47 H 0.11 1.75 5.63 -2.39 -0.01 1.74 16 48 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -70.83 375.79 -3.26 -74.09 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.37 Total: 12.20 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 8.16 Total: 24.76 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -13.75 Total: -132.79 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.83 -3.26 -74.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601543690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.165 kcal (2) G-P(sol) polarization free energy of solvation -70.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds