Wall clock time and date at job start Tue Mar 31 2020 04:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99605 * 2 1 4 4 O 1.20827 * 120.00453 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00110 * 179.97438 * 3 2 1 6 6 H 1.09003 * 108.97692 * 301.16081 * 5 3 2 7 7 C 1.46136 * 108.99093 * 59.99978 * 5 3 2 8 8 N 1.48106 * 112.19248 * 181.41020 * 7 5 3 9 9 C 1.46903 * 111.00197 * 156.49223 * 8 7 5 10 10 C 1.44262 * 109.98206 * 279.72897 * 8 7 5 11 11 C 1.53929 * 112.55892 * 93.89534 * 10 8 7 12 12 N 1.48195 * 112.77226 * 318.38080 * 11 10 8 13 13 C 1.46904 * 110.99662 * 191.68667 * 12 11 10 14 14 C 1.52996 * 109.47090 * 318.23561 * 13 12 11 15 15 H 1.08998 * 109.47429 * 55.00055 * 14 13 12 16 16 C 1.52999 * 109.47189 * 294.99844 * 14 13 12 17 17 C 1.53007 * 109.46922 * 175.00389 * 14 13 12 18 18 C 1.50701 * 109.46835 * 185.00087 * 17 14 13 19 19 H 1.08008 * 120.00144 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99939 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47340 * 60.00208 * 22 20 18 24 24 H 1.48501 * 109.47087 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47213 * 299.99683 * 22 20 18 26 26 C 1.44250 * 114.27025 * 318.13292 * 12 11 10 27 27 H 1.09003 * 109.46902 * 299.99560 * 1 2 3 28 28 H 1.08995 * 109.46952 * 60.00379 * 1 2 3 29 29 H 1.09004 * 109.46497 * 180.02562 * 1 2 3 30 30 H 1.08996 * 108.93873 * 60.71154 * 7 5 3 31 31 H 1.09006 * 108.93873 * 302.10729 * 7 5 3 32 32 H 1.08996 * 109.46610 * 60.00308 * 9 8 7 33 33 H 1.09006 * 109.46822 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47380 * 300.00136 * 9 8 7 35 35 H 1.09003 * 108.86550 * 214.69013 * 10 8 7 36 36 H 1.09003 * 108.85952 * 333.10533 * 10 8 7 37 37 H 1.08999 * 108.82094 * 197.53402 * 11 10 8 38 38 H 1.08997 * 108.82039 * 79.22962 * 11 10 8 39 39 H 1.08994 * 109.47127 * 78.24311 * 13 12 11 40 40 H 1.09006 * 109.46753 * 198.24066 * 13 12 11 41 41 H 1.09004 * 109.47087 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.47830 * 300.00234 * 16 14 13 43 43 H 1.09003 * 109.46890 * 60.00352 * 16 14 13 44 44 H 1.08995 * 109.47093 * 304.99639 * 17 14 13 45 45 H 1.08995 * 109.47212 * 65.00026 * 17 14 13 46 46 H 0.96996 * 120.00029 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.61190 * 333.65635 * 26 12 11 48 48 H 1.08997 * 109.75372 * 213.22538 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9479 0.7611 0.8829 7 6 4.0779 0.6097 -1.1958 8 7 5.5579 0.6167 -1.2501 9 6 6.0590 -0.4773 -2.0927 10 6 6.0277 1.8942 -1.7279 11 6 6.3580 2.8680 -0.5825 12 7 5.3582 2.8278 0.5108 13 6 5.5493 3.9493 1.4402 14 6 7.0439 4.1472 1.7003 15 1 7.5640 4.2760 0.7512 16 6 7.6021 2.9210 2.4254 17 6 7.2503 5.3905 2.5679 18 6 8.7257 5.6559 2.7222 19 1 9.4443 5.0029 2.2492 20 6 9.1583 6.7324 3.4673 21 7 8.2833 7.5278 4.0429 22 14 10.9871 7.0619 3.6580 23 1 11.5919 7.2853 2.3203 24 1 11.1875 8.2692 4.4991 25 1 11.6356 5.8935 4.3058 26 6 3.9897 2.7571 0.0604 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.6892 1.1192 -2.0774 31 1 3.7285 -0.4228 -1.2032 32 1 5.6716 -0.3627 -3.1051 33 1 7.1485 -0.4486 -2.1155 34 1 5.7288 -1.4319 -1.6832 35 1 6.9246 1.7381 -2.3274 36 1 5.2579 2.3395 -2.3582 37 1 6.4003 3.8808 -0.9832 38 1 7.3358 2.6124 -0.1744 39 1 5.1329 4.8574 1.0044 40 1 5.0425 3.7322 2.3806 41 1 8.6671 3.0618 2.6103 42 1 7.0821 2.7921 3.3747 43 1 7.4551 2.0352 1.8074 44 1 6.7747 6.2483 2.0926 45 1 6.8061 5.2263 3.5496 46 1 8.5876 8.2853 4.5667 47 1 3.9075 3.2013 -0.9316 48 1 3.3447 3.2939 0.7561 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602698540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:50 Heat of formation + Delta-G solvation = -74.769136 kcal Electronic energy + Delta-G solvation = -25575.315592 eV Core-core repulsion = 22051.557052 eV Total energy + Delta-G solvation = -3523.758540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98544 -39.25562 -36.88583 -36.69289 -34.31360 -33.22822 -31.81401 -29.34088 -28.03798 -27.05562 -26.25590 -25.12304 -24.85449 -22.92917 -21.86738 -20.68081 -19.95959 -18.51503 -17.83852 -17.01039 -16.75780 -16.31492 -15.92688 -15.48678 -14.96428 -14.79887 -14.39526 -14.19458 -13.83385 -13.73737 -13.47958 -13.23869 -13.11822 -12.47921 -12.43108 -12.25360 -12.22175 -11.89587 -11.74035 -11.44623 -11.22855 -11.05655 -10.98258 -10.96651 -10.83006 -10.74419 -10.61335 -10.49158 -10.24111 -10.12249 -9.57411 -9.09055 -8.90342 -8.45751 -8.28637 -7.78787 -5.93733 -3.94795 2.03737 2.45666 3.36651 3.41087 3.43391 3.70845 4.16487 4.50908 4.56103 4.74605 4.82726 4.85248 4.93266 4.98636 5.07590 5.13926 5.24513 5.29638 5.35413 5.41835 5.44054 5.47671 5.59256 5.71849 5.73213 5.81919 5.87424 5.95422 6.03449 6.18204 6.22113 6.26603 6.52378 6.61340 6.74070 6.85645 6.95205 7.08821 7.22665 7.26238 7.51476 7.54595 7.62791 7.73951 7.90424 8.06809 8.50663 9.11493 9.68284 11.17810 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.003292 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.037613 B = 8502.560817 C = 9423.787210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.071 4.071 6 H 0.128 0.872 7 C 0.067 3.933 8 N -0.519 5.519 9 C 0.028 3.972 10 C 0.051 3.949 11 C 0.069 3.931 12 N -0.539 5.539 13 C 0.067 3.933 14 C -0.088 4.088 15 H 0.058 0.942 16 C -0.124 4.124 17 C 0.028 3.972 18 C -0.512 4.512 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.084 3.916 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.045 0.955 44 H 0.012 0.988 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.040 0.960 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 -17.574 -12.727 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.091 4.091 6 H 0.146 0.854 7 C -0.061 4.061 8 N -0.243 5.243 9 C -0.120 4.120 10 C -0.078 4.078 11 C -0.058 4.058 12 N -0.263 5.263 13 C -0.059 4.059 14 C -0.107 4.107 15 H 0.076 0.924 16 C -0.182 4.182 17 C -0.010 4.010 18 C -0.550 4.550 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.046 4.046 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.030 0.970 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.785 -17.595 -11.916 24.299 hybrid contribution 0.240 1.235 -1.041 1.633 sum -11.545 -16.360 -12.957 23.850 Atomic orbital electron populations 1.23258 0.76545 1.03579 1.02561 1.86526 1.23287 1.33651 1.84139 1.23937 0.92101 0.81228 0.71880 1.90670 1.67186 1.36328 1.44971 1.20153 0.85167 1.00700 1.03096 0.85427 1.20919 0.88501 1.00951 0.95710 1.61314 1.07497 1.03316 1.52128 1.22468 1.00820 0.94396 0.94312 1.22074 0.99863 0.89760 0.96079 1.22526 0.96972 0.96059 0.90278 1.60226 1.01925 1.46018 1.18177 1.22358 0.99052 0.89550 0.94947 1.21357 0.91617 0.97930 0.99807 0.92360 1.21631 1.00798 0.96561 0.99177 1.19113 0.96661 0.90822 0.94387 1.21196 0.92223 1.10735 1.30849 0.92658 1.25016 0.97341 0.96285 0.95896 1.69955 1.33453 1.16373 1.33913 0.86705 0.85980 0.77578 0.78002 1.20371 1.21419 1.20263 1.21515 0.90691 0.92146 1.00245 0.91816 0.92036 0.88166 0.94705 0.90041 0.95996 0.90970 0.91190 0.90826 0.94818 0.94458 0.89436 0.95392 0.91155 0.92890 0.94071 0.93582 0.97013 0.96562 0.93073 0.94149 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.72 10.27 -39.25 -0.40 -4.13 16 3 C 0.47 5.67 7.18 36.01 0.26 5.93 16 4 O -0.50 -7.46 15.35 -18.75 -0.29 -7.75 16 5 C -0.07 -0.83 2.51 -94.37 -0.24 -1.07 16 6 H 0.13 1.57 8.12 -51.93 -0.42 1.14 16 7 C 0.07 0.69 4.17 -6.42 -0.03 0.66 16 8 N -0.52 -5.62 4.66 -247.54 -1.15 -6.77 16 9 C 0.03 0.23 9.24 60.07 0.56 0.79 16 10 C 0.05 0.58 5.13 -4.75 -0.02 0.55 16 11 C 0.07 0.96 4.31 -2.62 -0.01 0.95 16 12 N -0.54 -8.07 3.83 -234.27 -0.90 -8.96 16 13 C 0.07 1.19 4.37 -3.82 -0.02 1.18 16 14 C -0.09 -1.79 1.82 -90.62 -0.17 -1.96 16 15 H 0.06 1.18 6.10 -51.93 -0.32 0.87 16 16 C -0.12 -2.40 8.62 37.16 0.32 -2.08 16 17 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 18 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 19 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 22 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.08 1.15 4.28 -4.58 -0.02 1.13 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.36 7.38 -51.93 -0.38 -0.02 16 31 H 0.08 0.74 7.55 -51.93 -0.39 0.35 16 32 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.57 7.97 -51.93 -0.41 0.16 16 34 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 35 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 36 H 0.03 0.38 6.54 -51.93 -0.34 0.04 16 37 H 0.04 0.54 7.79 -51.93 -0.40 0.14 16 38 H 0.09 1.31 5.83 -51.93 -0.30 1.01 16 39 H 0.03 0.51 8.07 -51.93 -0.42 0.09 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.80 6.77 -51.93 -0.35 0.45 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.04 0.56 6.96 -51.93 -0.36 0.19 16 48 H 0.08 1.22 6.90 -51.93 -0.36 0.86 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -31.55 367.71 -8.81 -40.36 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -8.52 Total: -3.46 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 1.19 Total: -5.15 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -1.31 Total: -42.22 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.69 Total: -11.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.55 -8.81 -40.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.405 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds