Wall clock time and date at job start Tue Mar 31 2020 04:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99605 * 2 1 4 4 O 1.20827 * 120.00453 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00110 * 179.97438 * 3 2 1 6 6 H 1.09003 * 108.97692 * 301.16081 * 5 3 2 7 7 C 1.46136 * 108.99093 * 59.99978 * 5 3 2 8 8 N 1.48106 * 112.19248 * 181.41020 * 7 5 3 9 9 C 1.46903 * 111.00197 * 156.49223 * 8 7 5 10 10 C 1.44262 * 109.98206 * 279.72897 * 8 7 5 11 11 C 1.53929 * 112.55892 * 93.89534 * 10 8 7 12 12 N 1.48195 * 112.77226 * 318.38080 * 11 10 8 13 13 C 1.46904 * 110.99662 * 191.68667 * 12 11 10 14 14 C 1.52996 * 109.47090 * 318.23561 * 13 12 11 15 15 H 1.08998 * 109.47429 * 55.00055 * 14 13 12 16 16 C 1.52999 * 109.47189 * 294.99844 * 14 13 12 17 17 C 1.53007 * 109.46922 * 175.00389 * 14 13 12 18 18 C 1.50701 * 109.46835 * 185.00087 * 17 14 13 19 19 H 1.08008 * 120.00144 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99939 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47340 * 60.00208 * 22 20 18 24 24 H 1.48501 * 109.47087 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47213 * 299.99683 * 22 20 18 26 26 C 1.44250 * 114.27025 * 318.13292 * 12 11 10 27 27 H 1.09003 * 109.46902 * 299.99560 * 1 2 3 28 28 H 1.08995 * 109.46952 * 60.00379 * 1 2 3 29 29 H 1.09004 * 109.46497 * 180.02562 * 1 2 3 30 30 H 1.08996 * 108.93873 * 60.71154 * 7 5 3 31 31 H 1.09006 * 108.93873 * 302.10729 * 7 5 3 32 32 H 1.08996 * 109.46610 * 60.00308 * 9 8 7 33 33 H 1.09006 * 109.46822 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47380 * 300.00136 * 9 8 7 35 35 H 1.09003 * 108.86550 * 214.69013 * 10 8 7 36 36 H 1.09003 * 108.85952 * 333.10533 * 10 8 7 37 37 H 1.08999 * 108.82094 * 197.53402 * 11 10 8 38 38 H 1.08997 * 108.82039 * 79.22962 * 11 10 8 39 39 H 1.08994 * 109.47127 * 78.24311 * 13 12 11 40 40 H 1.09006 * 109.46753 * 198.24066 * 13 12 11 41 41 H 1.09004 * 109.47087 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.47830 * 300.00234 * 16 14 13 43 43 H 1.09003 * 109.46890 * 60.00352 * 16 14 13 44 44 H 1.08995 * 109.47093 * 304.99639 * 17 14 13 45 45 H 1.08995 * 109.47212 * 65.00026 * 17 14 13 46 46 H 0.96996 * 120.00029 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.61190 * 333.65635 * 26 12 11 48 48 H 1.08997 * 109.75372 * 213.22538 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9479 0.7611 0.8829 7 6 4.0779 0.6097 -1.1958 8 7 5.5579 0.6167 -1.2501 9 6 6.0590 -0.4773 -2.0927 10 6 6.0277 1.8942 -1.7279 11 6 6.3580 2.8680 -0.5825 12 7 5.3582 2.8278 0.5108 13 6 5.5493 3.9493 1.4402 14 6 7.0439 4.1472 1.7003 15 1 7.5640 4.2760 0.7512 16 6 7.6021 2.9210 2.4254 17 6 7.2503 5.3905 2.5679 18 6 8.7257 5.6559 2.7222 19 1 9.4443 5.0029 2.2492 20 6 9.1583 6.7324 3.4673 21 7 8.2833 7.5278 4.0429 22 14 10.9871 7.0619 3.6580 23 1 11.5919 7.2853 2.3203 24 1 11.1875 8.2692 4.4991 25 1 11.6356 5.8935 4.3058 26 6 3.9897 2.7571 0.0604 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.6892 1.1192 -2.0774 31 1 3.7285 -0.4228 -1.2032 32 1 5.6716 -0.3627 -3.1051 33 1 7.1485 -0.4486 -2.1155 34 1 5.7288 -1.4319 -1.6832 35 1 6.9246 1.7381 -2.3274 36 1 5.2579 2.3395 -2.3582 37 1 6.4003 3.8808 -0.9832 38 1 7.3358 2.6124 -0.1744 39 1 5.1329 4.8574 1.0044 40 1 5.0425 3.7322 2.3806 41 1 8.6671 3.0618 2.6103 42 1 7.0821 2.7921 3.3747 43 1 7.4551 2.0352 1.8074 44 1 6.7747 6.2483 2.0926 45 1 6.8061 5.2263 3.5496 46 1 8.5876 8.2853 4.5667 47 1 3.9075 3.2013 -0.9316 48 1 3.3447 3.2939 0.7561 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602698540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:50 Heat of formation + Delta-G solvation = -95.267869 kcal Electronic energy + Delta-G solvation = -25576.204484 eV Core-core repulsion = 22051.557052 eV Total energy + Delta-G solvation = -3524.647432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93544 -40.28545 -38.15472 -37.61748 -35.83521 -34.54077 -33.59841 -30.36965 -29.08895 -28.58602 -27.49148 -26.25079 -26.00133 -24.62371 -22.96293 -21.77248 -21.04773 -20.02728 -18.80864 -18.50215 -17.86384 -17.59879 -16.96878 -16.68815 -16.28774 -16.06762 -15.84237 -15.38828 -14.87313 -14.79364 -14.63023 -14.30852 -14.21625 -13.92206 -13.81526 -13.35925 -13.30510 -13.21149 -12.99559 -12.72093 -12.67905 -12.60077 -12.35438 -12.16105 -12.06399 -12.00784 -11.84728 -11.81295 -11.74653 -11.47649 -11.31966 -11.01290 -10.85317 -10.50763 -9.27670 -9.03409 -8.15274 -6.24547 1.08833 1.41251 1.44283 1.51762 1.60834 2.43654 2.88252 3.01827 3.18136 3.62803 3.82086 3.93337 4.08930 4.09829 4.19698 4.26925 4.31378 4.33179 4.35223 4.42760 4.45049 4.53568 4.63555 4.67606 4.71825 4.80023 4.82018 4.87328 4.91991 4.95497 5.04106 5.05797 5.12363 5.14989 5.32258 5.33175 5.50962 5.54987 5.58524 5.84167 5.90926 6.05248 6.09797 6.22319 6.33948 6.39414 6.66159 6.91541 7.43671 8.96808 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.003292 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.037613 B = 8502.560817 C = 9423.787210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.061 4.061 6 H 0.126 0.874 7 C 0.070 3.930 8 N -0.534 5.534 9 C 0.029 3.971 10 C 0.058 3.942 11 C 0.066 3.934 12 N -0.534 5.534 13 C 0.078 3.922 14 C -0.076 4.076 15 H 0.061 0.939 16 C -0.112 4.112 17 C 0.033 3.967 18 C -0.526 4.526 19 H 0.063 0.937 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.266 1.266 26 C 0.085 3.915 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.027 0.973 38 H 0.079 0.921 39 H 0.015 0.985 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.069 0.931 44 H -0.018 1.018 45 H -0.012 1.012 46 H 0.261 0.739 47 H 0.040 0.960 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -19.948 -14.109 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.081 4.081 6 H 0.144 0.856 7 C -0.058 4.058 8 N -0.258 5.258 9 C -0.118 4.118 10 C -0.071 4.071 11 C -0.061 4.061 12 N -0.258 5.258 13 C -0.049 4.049 14 C -0.095 4.095 15 H 0.079 0.921 16 C -0.169 4.169 17 C -0.004 4.004 18 C -0.565 4.565 19 H 0.081 0.919 20 C -0.201 4.201 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.191 1.191 26 C -0.044 4.044 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.000 1.000 45 H 0.007 0.993 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.116 -20.016 -13.318 26.487 hybrid contribution -0.059 1.944 -0.611 2.038 sum -11.176 -18.072 -13.929 25.407 Atomic orbital electron populations 1.23569 0.74793 1.05812 1.02436 1.86509 1.24949 1.32330 1.83512 1.23923 0.92144 0.81303 0.71021 1.90665 1.67854 1.37464 1.46631 1.20009 0.85214 0.98939 1.03987 0.85617 1.20895 0.88412 1.01729 0.94715 1.61250 1.07686 1.03602 1.53218 1.22512 1.01065 0.93754 0.94499 1.21964 1.00833 0.89576 0.94712 1.22585 0.96175 0.96622 0.90739 1.60247 1.02960 1.44025 1.18543 1.22089 0.96934 0.90285 0.95594 1.21147 0.93597 0.95941 0.98796 0.92057 1.21500 0.99518 0.96748 0.99117 1.19005 0.95463 0.92311 0.93669 1.21605 0.93324 1.10873 1.30650 0.91879 1.25968 1.02477 0.96083 0.95532 1.70105 1.35894 1.17015 1.34809 0.85560 0.79818 0.77631 0.78411 1.19176 1.21204 1.19103 1.21476 0.89517 0.93818 0.99584 0.92289 0.91911 0.84765 0.94522 0.88251 0.94934 0.90571 0.90176 0.89079 0.94605 0.95502 0.90317 0.96669 0.91763 0.94269 0.94711 0.91169 0.99969 0.99342 0.93007 0.94176 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.71 10.27 -51.38 -0.53 -7.24 16 3 C 0.47 11.01 7.18 71.24 0.51 11.53 16 4 O -0.54 -15.80 15.35 21.96 0.34 -15.46 16 5 C -0.06 -1.36 2.51 -13.22 -0.03 -1.39 16 6 H 0.13 2.89 8.12 -2.39 -0.02 2.87 16 7 C 0.07 1.27 4.17 83.96 0.35 1.62 16 8 N -0.53 -10.14 4.66 -937.09 -4.37 -14.50 16 9 C 0.03 0.38 9.24 127.69 1.18 1.57 16 10 C 0.06 1.19 5.13 87.11 0.45 1.64 16 11 C 0.07 1.79 4.31 86.37 0.37 2.16 16 12 N -0.53 -15.81 3.83 -895.09 -3.43 -19.24 16 13 C 0.08 2.85 4.37 86.30 0.38 3.23 16 14 C -0.08 -3.15 1.82 -10.79 -0.02 -3.17 16 15 H 0.06 2.50 6.10 -2.39 -0.01 2.49 16 16 C -0.11 -4.27 8.62 71.98 0.62 -3.65 16 17 C 0.03 1.77 4.45 29.85 0.13 1.91 16 18 C -0.53 -30.00 8.41 25.60 0.22 -29.78 16 19 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 21 N -0.94 -58.28 13.29 21.45 0.28 -57.99 16 22 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C 0.09 2.33 4.28 87.22 0.37 2.70 16 27 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 28 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.04 0.67 7.38 -2.39 -0.02 0.65 16 31 H 0.10 1.48 7.55 -2.38 -0.02 1.46 16 32 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.97 7.97 -2.38 -0.02 0.95 16 34 H 0.08 0.92 8.06 -2.39 -0.02 0.90 16 35 H 0.09 1.55 7.49 -2.39 -0.02 1.53 16 36 H 0.04 0.72 6.54 -2.39 -0.02 0.71 16 37 H 0.03 0.78 7.79 -2.39 -0.02 0.76 16 38 H 0.08 2.26 5.83 -2.39 -0.01 2.25 16 39 H 0.02 0.58 8.07 -2.39 -0.02 0.56 16 40 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 42 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 2.34 6.77 -2.39 -0.02 2.33 16 44 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 45 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 46 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.04 1.10 6.96 -2.39 -0.02 1.08 16 48 H 0.06 1.99 6.90 -2.39 -0.02 1.97 16 Total: -1.00 -68.92 367.71 1.43 -67.49 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.92 Total: 9.92 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 6.19 Total: -9.84 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -7.51 Total: -91.73 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.19 Total: -22.69 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.92 1.43 -67.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.776 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds