Wall clock time and date at job start Tue Mar 31 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99765 * 2 1 4 4 H 1.48495 * 109.47412 * 274.99296 * 3 2 1 5 5 H 1.48500 * 109.47335 * 34.99319 * 3 2 1 6 6 H 1.48501 * 109.47277 * 154.99231 * 3 2 1 7 7 C 1.37874 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 183.16909 * 7 2 1 9 9 C 1.50694 * 120.00521 * 3.16995 * 7 2 1 10 10 C 1.53005 * 115.54878 * 324.14381 * 9 7 2 11 11 N 1.46896 * 109.46976 * 305.17785 * 10 9 7 12 12 C 1.46900 * 111.00193 * 292.48437 * 11 10 9 13 13 C 1.52997 * 109.46937 * 291.58236 * 12 11 10 14 14 O 1.42909 * 109.46944 * 70.17512 * 13 12 11 15 15 C 1.46900 * 110.99808 * 168.53064 * 11 10 9 16 16 C 1.53000 * 109.47275 * 193.72924 * 15 11 10 17 17 N 1.46897 * 109.47454 * 185.13720 * 16 15 11 18 18 C 1.47016 * 111.00361 * 293.63832 * 17 16 15 19 19 C 1.53096 * 109.25958 * 177.60664 * 18 17 16 20 20 O 1.43016 * 109.25908 * 56.84595 * 19 18 17 21 21 C 1.43016 * 113.73844 * 301.33363 * 20 19 18 22 22 C 1.47020 * 111.00134 * 169.99813 * 17 16 15 23 23 C 1.52994 * 117.50121 * 109.81237 * 9 7 2 24 24 C 1.52994 * 117.50234 * 178.47438 * 9 7 2 25 25 H 0.97003 * 119.99776 * 5.01309 * 1 2 3 26 26 H 1.08994 * 109.47067 * 185.17814 * 10 9 7 27 27 H 1.09003 * 109.47141 * 65.17739 * 10 9 7 28 28 H 1.09003 * 109.47240 * 171.58586 * 12 11 10 29 29 H 1.09004 * 109.47059 * 51.58396 * 12 11 10 30 30 H 1.09004 * 109.47045 * 190.16854 * 13 12 11 31 31 H 1.08997 * 109.47853 * 310.17185 * 13 12 11 32 32 H 0.96698 * 113.99596 * 184.96838 * 14 13 12 33 33 H 1.09002 * 109.47362 * 313.73044 * 15 11 10 34 34 H 1.08997 * 109.47227 * 73.73030 * 15 11 10 35 35 H 1.09001 * 109.47615 * 305.14219 * 16 15 11 36 36 H 1.09011 * 109.47167 * 65.13982 * 16 15 11 37 37 H 1.09000 * 109.50456 * 297.53982 * 18 17 16 38 38 H 1.09002 * 109.50641 * 57.66689 * 18 17 16 39 39 H 1.09003 * 109.50288 * 296.91434 * 19 18 17 40 40 H 1.09002 * 109.54123 * 176.80287 * 19 18 17 41 41 H 1.09004 * 109.50272 * 298.72949 * 21 20 19 42 42 H 1.09002 * 109.53718 * 178.62633 * 21 20 19 43 43 H 1.08993 * 109.50573 * 302.33320 * 22 17 16 44 44 H 1.09005 * 109.49896 * 62.41762 * 22 17 16 45 45 H 1.09004 * 117.49837 * 215.00662 * 23 9 7 46 46 H 1.09008 * 117.49886 * 0.02562 * 23 9 7 47 47 H 1.09002 * 117.49605 * 359.97426 * 24 9 7 48 48 H 1.08996 * 117.50164 * 144.97291 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0833 -1.1948 0.0522 9 6 1.2528 -2.4982 -0.0710 10 6 -0.0833 -2.5314 0.6738 11 7 0.1271 -2.1418 2.0744 12 6 0.9163 -3.1536 2.7895 13 6 0.0891 -4.4316 2.9416 14 8 -0.0614 -5.0563 1.6650 15 6 -1.1537 -1.8982 2.7511 16 6 -0.9013 -1.1755 4.0759 17 7 -2.1670 -1.0413 4.8094 18 6 -3.0939 -0.1463 4.1015 19 6 -4.4179 -0.0822 4.8675 20 8 -4.1670 0.3485 6.2080 21 6 -3.2686 -0.5008 6.9269 22 6 -1.9330 -0.5691 6.1819 23 6 1.3596 -3.3050 -1.3666 24 6 2.0761 -3.7873 -0.1029 25 1 -0.4850 0.8369 -0.0734 26 1 -0.4957 -3.5396 0.6352 27 1 -0.7787 -1.8361 0.2037 28 1 1.1844 -2.7749 3.7759 29 1 1.8231 -3.3725 2.2256 30 1 0.5973 -5.1145 3.6225 31 1 -0.8934 -4.1831 3.3425 32 1 -0.6388 -5.8319 1.6724 33 1 -1.7888 -1.2808 2.1157 34 1 -1.6490 -2.8496 2.9449 35 1 -0.1939 -1.7498 4.6741 36 1 -0.4898 -0.1858 3.8773 37 1 -2.6603 0.8519 4.0400 38 1 -3.2729 -0.5286 3.0966 39 1 -4.8777 -1.0704 4.8827 40 1 -5.0886 0.6239 4.3778 41 1 -3.6951 -1.5011 7.0021 42 1 -3.1075 -0.0977 7.9268 43 1 -1.2646 -1.2601 6.6955 44 1 -1.4801 0.4220 6.1535 45 1 0.4780 -3.8594 -1.6883 46 1 1.9740 -2.8927 -2.1671 47 1 3.1615 -3.6922 -0.0725 48 1 1.6662 -4.6590 0.4071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602781458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:37 Heat of formation + Delta-G solvation = -34.392561 kcal Electronic energy + Delta-G solvation = -26495.201581 eV Core-core repulsion = 22973.193900 eV Total energy + Delta-G solvation = -3522.007681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.54837 -38.33882 -35.99772 -35.86202 -34.21234 -31.88525 -31.21228 -29.50487 -28.36694 -26.14382 -25.22195 -24.05911 -23.58918 -22.41081 -20.90195 -20.37521 -19.34144 -18.59813 -17.09163 -16.53229 -16.17251 -16.04708 -15.59074 -15.08448 -14.98188 -14.63344 -14.43334 -14.33389 -13.60248 -13.50415 -13.13042 -12.82675 -12.69425 -12.43007 -12.01422 -11.66295 -11.53974 -11.38763 -11.29570 -11.11506 -11.09688 -10.89522 -10.61190 -10.53889 -10.34545 -10.12813 -10.04306 -9.92012 -9.67365 -9.21182 -9.15274 -8.62228 -8.39043 -8.25217 -7.88053 -6.85326 -5.70227 -3.80652 3.37861 3.45109 3.48983 3.75083 3.93045 4.54405 4.68329 4.85596 4.98825 5.05266 5.09356 5.15915 5.29066 5.37497 5.50010 5.53768 5.55324 5.62658 5.71826 5.78025 5.79032 5.84687 5.89276 5.96352 6.03765 6.15448 6.28260 6.39019 6.52128 6.55861 6.73733 6.81165 6.94713 7.00925 7.04018 7.12307 7.17072 7.18131 7.26460 7.46546 7.58142 7.81603 8.01181 8.20153 8.41742 8.48419 8.75897 9.15756 9.79276 11.23422 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.005281 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.323019 B = 5300.343333 C = 6634.298126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.085 3.915 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.469 4.469 8 H 0.049 0.951 9 C 0.068 3.932 10 C 0.097 3.903 11 N -0.486 5.486 12 C 0.050 3.950 13 C 0.033 3.967 14 O -0.547 6.547 15 C 0.065 3.935 16 C 0.062 3.938 17 N -0.538 5.538 18 C 0.016 3.984 19 C 0.065 3.935 20 O -0.390 6.390 21 C 0.066 3.934 22 C 0.018 3.982 23 C -0.211 4.211 24 C -0.218 4.218 25 H 0.251 0.749 26 H 0.026 0.974 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.356 0.644 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 -4.816 11.241 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.117 4.117 3 Si 0.713 3.287 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.067 3.933 10 C -0.029 4.029 11 N -0.207 5.207 12 C -0.079 4.079 13 C -0.046 4.046 14 O -0.351 6.351 15 C -0.064 4.064 16 C -0.066 4.066 17 N -0.263 5.263 18 C -0.112 4.112 19 C -0.012 4.012 20 O -0.308 6.308 21 C -0.011 4.011 22 C -0.111 4.111 23 C -0.250 4.250 24 C -0.255 4.255 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.202 0.798 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.130 -4.014 11.238 13.901 hybrid contribution 0.396 0.217 -0.026 0.452 sum -6.734 -3.797 11.211 13.618 Atomic orbital electron populations 1.69864 1.05620 1.25201 1.50213 1.24734 0.94588 0.98108 0.94242 0.86720 0.80035 0.84422 0.77480 1.21270 1.21573 1.20225 1.20393 0.91784 0.89133 1.49309 0.93286 1.18909 0.93307 0.88849 0.92238 1.22064 0.98068 0.97357 0.85425 1.61738 1.14842 1.41475 1.02655 1.22409 0.98687 0.87634 0.99160 1.23156 1.00110 0.96117 0.85242 1.86847 1.71493 1.46145 1.30634 1.21956 0.92847 0.97930 0.93661 1.22119 0.88934 1.00446 0.95102 1.62227 1.13921 1.48353 1.01847 1.22808 0.93631 0.95804 0.98965 1.22688 0.96028 1.00279 0.82233 1.87954 1.65388 1.51920 1.25558 1.22629 0.88785 0.94857 0.94876 1.22740 0.97980 0.99623 0.90736 1.22917 1.01353 1.07794 0.92926 1.23074 0.97186 1.01816 1.03390 0.93881 0.95600 0.87470 0.91543 0.88985 0.95104 0.93483 0.79820 0.90966 0.95515 0.91344 0.93774 0.93863 0.88974 0.92485 0.88646 0.92512 0.88849 0.89937 0.94091 0.92216 0.91216 0.92048 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.42 10.22 55.43 0.57 -22.85 16 2 C 0.09 2.30 5.33 -17.82 -0.10 2.21 16 3 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.47 -12.82 8.75 -34.44 -0.30 -13.12 16 8 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 9 C 0.07 1.68 1.54 -155.67 -0.24 1.44 16 10 C 0.10 2.25 3.61 -3.82 -0.01 2.23 16 11 N -0.49 -10.11 4.17 -234.63 -0.98 -11.09 16 12 C 0.05 0.93 5.43 -3.83 -0.02 0.91 16 13 C 0.03 0.51 6.88 37.16 0.26 0.76 16 14 O -0.55 -8.79 8.33 -35.23 -0.29 -9.08 16 15 C 0.06 1.18 4.53 -3.82 -0.02 1.16 16 16 C 0.06 1.00 5.06 -3.83 -0.02 0.98 16 17 N -0.54 -7.59 4.73 -234.30 -1.11 -8.70 16 18 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 19 C 0.06 0.77 7.01 37.21 0.26 1.03 16 20 O -0.39 -5.09 10.83 -35.23 -0.38 -5.47 16 21 C 0.07 0.72 7.01 37.20 0.26 0.98 16 22 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 23 C -0.21 -4.98 9.96 -26.70 -0.27 -5.25 16 24 C -0.22 -4.92 8.12 -26.70 -0.22 -5.14 16 25 H 0.25 6.58 8.32 -40.82 -0.34 6.24 16 26 H 0.03 0.59 4.93 -51.93 -0.26 0.33 16 27 H 0.11 2.79 5.59 -51.93 -0.29 2.50 16 28 H 0.07 1.12 6.70 -51.93 -0.35 0.78 16 29 H 0.09 1.92 5.62 -51.93 -0.29 1.63 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.71 5.61 -51.93 -0.29 0.42 16 32 H 0.36 4.09 9.12 45.56 0.42 4.50 16 33 H 0.07 1.44 6.45 -51.93 -0.34 1.11 16 34 H 0.03 0.47 5.51 -51.93 -0.29 0.18 16 35 H 0.07 1.06 6.47 -51.93 -0.34 0.73 16 36 H 0.04 0.83 8.12 -51.92 -0.42 0.41 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.32 6.49 -51.93 -0.34 0.98 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.07 1.66 8.14 -51.92 -0.42 1.24 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.09 1.84 5.70 -51.93 -0.30 1.54 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -29.18 355.40 -9.58 -38.76 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.27 Total: 8.04 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.45 Total: -11.41 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -1.52 Total: -42.64 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.68 Total: -14.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.18 -9.58 -38.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602781458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.371 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds