Wall clock time and date at job start Tue Mar 31 2020 03:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99765 * 2 1 4 4 H 1.48495 * 109.47412 * 274.99296 * 3 2 1 5 5 H 1.48500 * 109.47335 * 34.99319 * 3 2 1 6 6 H 1.48501 * 109.47277 * 154.99231 * 3 2 1 7 7 C 1.37874 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 183.16909 * 7 2 1 9 9 C 1.50694 * 120.00521 * 3.16995 * 7 2 1 10 10 C 1.53005 * 115.54878 * 324.14381 * 9 7 2 11 11 N 1.46896 * 109.46976 * 305.17785 * 10 9 7 12 12 C 1.46900 * 111.00193 * 292.48437 * 11 10 9 13 13 C 1.52997 * 109.46937 * 291.58236 * 12 11 10 14 14 O 1.42909 * 109.46944 * 70.17512 * 13 12 11 15 15 C 1.46900 * 110.99808 * 168.53064 * 11 10 9 16 16 C 1.53000 * 109.47275 * 193.72924 * 15 11 10 17 17 N 1.46897 * 109.47454 * 185.13720 * 16 15 11 18 18 C 1.47016 * 111.00361 * 293.63832 * 17 16 15 19 19 C 1.53096 * 109.25958 * 177.60664 * 18 17 16 20 20 O 1.43016 * 109.25908 * 56.84595 * 19 18 17 21 21 C 1.43016 * 113.73844 * 301.33363 * 20 19 18 22 22 C 1.47020 * 111.00134 * 169.99813 * 17 16 15 23 23 C 1.52994 * 117.50121 * 109.81237 * 9 7 2 24 24 C 1.52994 * 117.50234 * 178.47438 * 9 7 2 25 25 H 0.97003 * 119.99776 * 5.01309 * 1 2 3 26 26 H 1.08994 * 109.47067 * 185.17814 * 10 9 7 27 27 H 1.09003 * 109.47141 * 65.17739 * 10 9 7 28 28 H 1.09003 * 109.47240 * 171.58586 * 12 11 10 29 29 H 1.09004 * 109.47059 * 51.58396 * 12 11 10 30 30 H 1.09004 * 109.47045 * 190.16854 * 13 12 11 31 31 H 1.08997 * 109.47853 * 310.17185 * 13 12 11 32 32 H 0.96698 * 113.99596 * 184.96838 * 14 13 12 33 33 H 1.09002 * 109.47362 * 313.73044 * 15 11 10 34 34 H 1.08997 * 109.47227 * 73.73030 * 15 11 10 35 35 H 1.09001 * 109.47615 * 305.14219 * 16 15 11 36 36 H 1.09011 * 109.47167 * 65.13982 * 16 15 11 37 37 H 1.09000 * 109.50456 * 297.53982 * 18 17 16 38 38 H 1.09002 * 109.50641 * 57.66689 * 18 17 16 39 39 H 1.09003 * 109.50288 * 296.91434 * 19 18 17 40 40 H 1.09002 * 109.54123 * 176.80287 * 19 18 17 41 41 H 1.09004 * 109.50272 * 298.72949 * 21 20 19 42 42 H 1.09002 * 109.53718 * 178.62633 * 21 20 19 43 43 H 1.08993 * 109.50573 * 302.33320 * 22 17 16 44 44 H 1.09005 * 109.49896 * 62.41762 * 22 17 16 45 45 H 1.09004 * 117.49837 * 215.00662 * 23 9 7 46 46 H 1.09008 * 117.49886 * 0.02562 * 23 9 7 47 47 H 1.09002 * 117.49605 * 359.97426 * 24 9 7 48 48 H 1.08996 * 117.50164 * 144.97291 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0833 -1.1948 0.0522 9 6 1.2528 -2.4982 -0.0710 10 6 -0.0833 -2.5314 0.6738 11 7 0.1271 -2.1418 2.0744 12 6 0.9163 -3.1536 2.7895 13 6 0.0891 -4.4316 2.9416 14 8 -0.0614 -5.0563 1.6650 15 6 -1.1537 -1.8982 2.7511 16 6 -0.9013 -1.1755 4.0759 17 7 -2.1670 -1.0413 4.8094 18 6 -3.0939 -0.1463 4.1015 19 6 -4.4179 -0.0822 4.8675 20 8 -4.1670 0.3485 6.2080 21 6 -3.2686 -0.5008 6.9269 22 6 -1.9330 -0.5691 6.1819 23 6 1.3596 -3.3050 -1.3666 24 6 2.0761 -3.7873 -0.1029 25 1 -0.4850 0.8369 -0.0734 26 1 -0.4957 -3.5396 0.6352 27 1 -0.7787 -1.8361 0.2037 28 1 1.1844 -2.7749 3.7759 29 1 1.8231 -3.3725 2.2256 30 1 0.5973 -5.1145 3.6225 31 1 -0.8934 -4.1831 3.3425 32 1 -0.6388 -5.8319 1.6724 33 1 -1.7888 -1.2808 2.1157 34 1 -1.6490 -2.8496 2.9449 35 1 -0.1939 -1.7498 4.6741 36 1 -0.4898 -0.1858 3.8773 37 1 -2.6603 0.8519 4.0400 38 1 -3.2729 -0.5286 3.0966 39 1 -4.8777 -1.0704 4.8827 40 1 -5.0886 0.6239 4.3778 41 1 -3.6951 -1.5011 7.0021 42 1 -3.1075 -0.0977 7.9268 43 1 -1.2646 -1.2601 6.6955 44 1 -1.4801 0.4220 6.1535 45 1 0.4780 -3.8594 -1.6883 46 1 1.9740 -2.8927 -2.1671 47 1 3.1615 -3.6922 -0.0725 48 1 1.6662 -4.6590 0.4071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602781458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:36 Heat of formation + Delta-G solvation = -56.186499 kcal Electronic energy + Delta-G solvation = -26496.146637 eV Core-core repulsion = 22973.193900 eV Total energy + Delta-G solvation = -3522.952737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63948 -39.80277 -37.58355 -37.07918 -35.60797 -33.95018 -32.18216 -30.78764 -29.83364 -27.60975 -27.08038 -25.26646 -24.90179 -23.74897 -22.73945 -21.45182 -20.87393 -20.40439 -18.34875 -17.95002 -17.57101 -17.25736 -16.98170 -16.46470 -16.18022 -15.97028 -15.82085 -15.65257 -15.37243 -14.86969 -14.59516 -14.34630 -14.09450 -13.72510 -13.28602 -13.16555 -12.99769 -12.87572 -12.81726 -12.75800 -12.46865 -12.34805 -12.27700 -12.18492 -11.83715 -11.79096 -11.58548 -11.39619 -11.07519 -10.67098 -10.64111 -10.54277 -10.26379 -9.83684 -9.44120 -8.41668 -7.73813 -5.92288 1.41430 1.44886 1.52037 2.51970 2.66686 2.96057 3.23008 3.50695 3.63691 3.88807 3.93625 3.98960 4.05222 4.19694 4.23085 4.31122 4.35075 4.44948 4.53597 4.56465 4.58858 4.63904 4.70751 4.74757 4.83373 4.85104 4.88500 4.91501 4.96516 5.00407 5.09605 5.13252 5.20194 5.33131 5.36433 5.49226 5.63439 5.72213 5.79010 5.90816 5.99402 6.17666 6.26598 6.57597 6.80924 6.91663 7.04111 7.13524 7.68435 9.14018 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.005281 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.323019 B = 5300.343333 C = 6634.298126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.052 3.948 3 Si 0.933 3.067 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.488 4.488 8 H 0.031 0.969 9 C 0.044 3.956 10 C 0.114 3.886 11 N -0.509 5.509 12 C 0.048 3.952 13 C 0.045 3.955 14 O -0.570 6.570 15 C 0.077 3.923 16 C 0.076 3.924 17 N -0.534 5.534 18 C 0.017 3.983 19 C 0.070 3.930 20 O -0.406 6.406 21 C 0.066 3.934 22 C 0.015 3.985 23 C -0.214 4.214 24 C -0.193 4.193 25 H 0.249 0.751 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.379 0.621 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.011 0.989 37 H 0.022 0.978 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.027 0.973 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 -6.004 12.970 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.150 4.150 3 Si 0.761 3.239 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.526 4.526 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.013 4.013 11 N -0.231 5.231 12 C -0.080 4.080 13 C -0.034 4.034 14 O -0.378 6.378 15 C -0.051 4.051 16 C -0.052 4.052 17 N -0.259 5.259 18 C -0.112 4.112 19 C -0.007 4.007 20 O -0.324 6.324 21 C -0.011 4.011 22 C -0.113 4.113 23 C -0.253 4.253 24 C -0.230 4.230 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.228 0.772 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.119 0.881 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.850 -5.221 12.976 16.039 hybrid contribution 0.638 0.560 -0.558 1.016 sum -7.212 -4.660 12.418 15.098 Atomic orbital electron populations 1.70021 1.06067 1.25354 1.50078 1.25224 0.95327 1.00155 0.94249 0.85966 0.78901 0.81697 0.77349 1.20956 1.21578 1.20442 1.20523 0.91126 0.90847 1.50101 0.95080 1.19023 0.94508 0.88711 0.93390 1.21707 0.96214 0.96854 0.86525 1.61603 1.16300 1.43108 1.02098 1.22362 0.97797 0.88955 0.98911 1.22948 0.99973 0.95072 0.85409 1.86715 1.72324 1.47523 1.31204 1.21803 0.91496 0.98110 0.93694 1.21895 0.90158 0.98478 0.94697 1.62262 1.12586 1.48482 1.02585 1.22809 0.94753 0.94488 0.99143 1.22713 0.94796 1.01389 0.81768 1.87940 1.65804 1.52858 1.25848 1.22798 0.87460 0.95440 0.95378 1.22877 0.99412 0.99300 0.89683 1.22921 1.01856 1.07805 0.92719 1.22981 0.96609 1.01182 1.02238 0.94153 0.94667 0.90786 0.90183 0.91590 0.92488 0.92797 0.77183 0.93551 0.94197 0.90135 0.97050 0.95978 0.89904 0.91369 0.87200 0.91404 0.86481 0.88098 0.95456 0.91076 0.92141 0.92591 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.20 10.22 21.45 0.22 -47.98 16 2 C 0.05 2.82 5.33 84.65 0.45 3.28 16 3 Si 0.93 44.74 29.54 68.60 2.03 46.77 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.49 -27.21 8.75 25.60 0.22 -26.98 16 8 H 0.03 1.79 7.82 -2.91 -0.02 1.77 16 9 C 0.04 2.22 1.54 -52.93 -0.08 2.13 16 10 C 0.11 5.29 3.61 86.31 0.31 5.61 16 11 N -0.51 -21.18 4.17 -896.23 -3.74 -24.92 16 12 C 0.05 1.72 5.43 86.30 0.47 2.19 16 13 C 0.04 1.25 6.88 71.98 0.49 1.75 16 14 O -0.57 -16.82 8.33 -148.98 -1.24 -18.06 16 15 C 0.08 2.80 4.53 86.30 0.39 3.19 16 16 C 0.08 2.44 5.06 86.30 0.44 2.88 16 17 N -0.53 -14.51 4.73 -895.20 -4.23 -18.74 16 18 C 0.02 0.46 5.44 86.31 0.47 0.93 16 19 C 0.07 1.56 7.01 72.01 0.50 2.07 16 20 O -0.41 -9.81 10.83 -148.98 -1.61 -11.42 16 21 C 0.07 1.26 7.01 72.01 0.50 1.77 16 22 C 0.02 0.35 5.65 86.31 0.49 0.84 16 23 C -0.21 -10.07 9.96 30.62 0.30 -9.77 16 24 C -0.19 -8.61 8.12 30.62 0.25 -8.37 16 25 H 0.25 13.33 8.32 -92.71 -0.77 12.56 16 26 H 0.04 1.56 4.93 -2.39 -0.01 1.55 16 27 H 0.07 3.94 5.59 -2.39 -0.01 3.92 16 28 H 0.08 2.58 6.70 -2.39 -0.02 2.56 16 29 H 0.07 2.70 5.62 -2.38 -0.01 2.69 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.05 1.44 5.61 -2.39 -0.01 1.43 16 32 H 0.38 7.48 9.12 -74.06 -0.68 6.80 16 33 H 0.05 1.91 6.45 -2.39 -0.02 1.89 16 34 H 0.04 1.34 5.51 -2.39 -0.01 1.33 16 35 H 0.08 2.38 6.47 -2.39 -0.02 2.36 16 36 H 0.01 0.43 8.12 -2.38 -0.02 0.41 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 2.42 6.49 -2.39 -0.02 2.40 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 1.91 8.09 -2.39 -0.02 1.89 16 44 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 46 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 47 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.10 4.19 5.70 -2.39 -0.01 4.18 16 Total: -1.00 -63.03 355.40 -3.09 -66.12 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.28 Total: 26.73 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.22 Total: -18.49 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -7.75 Total: -91.64 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -2.85 Total: -29.48 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.03 -3.09 -66.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602781458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.932 kcal (2) G-P(sol) polarization free energy of solvation -63.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds