Wall clock time and date at job start Tue Mar 31 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 C 1.50701 * 109.47185 * 119.99973 * 2 1 3 5 5 O 1.21282 * 119.99688 * 95.21760 * 4 2 1 6 6 N 1.34771 * 120.00271 * 275.21791 * 4 2 1 7 7 C 1.46502 * 119.99864 * 359.97438 * 6 4 2 8 8 C 1.46498 * 120.00223 * 179.97438 * 6 4 2 9 9 C 1.50704 * 109.46963 * 90.00181 * 8 6 4 10 10 H 1.07997 * 120.00093 * 359.97438 * 9 8 6 11 11 C 1.37883 * 119.99853 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99899 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99902 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47102 * 59.99810 * 13 11 9 15 15 H 1.48503 * 109.47122 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47188 * 299.99541 * 13 11 9 17 17 N 1.46908 * 109.47256 * 240.00251 * 2 1 3 18 18 C 1.46846 * 110.99803 * 52.43946 * 17 2 1 19 19 C 1.53175 * 109.55529 * 185.84351 * 18 17 2 20 20 C 1.53110 * 109.20600 * 300.85828 * 19 18 17 21 21 C 1.53125 * 109.21373 * 57.62383 * 20 19 18 22 22 H 1.09007 * 109.50024 * 62.29336 * 21 20 19 23 23 C 1.53001 * 109.50539 * 182.36846 * 21 20 19 24 24 C 1.53001 * 109.47445 * 295.00523 * 23 21 20 25 25 O 1.42898 * 109.47369 * 179.97438 * 24 23 21 26 26 C 1.46844 * 111.00194 * 176.65118 * 17 2 1 27 27 H 1.08989 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47201 * 300.00123 * 1 2 3 29 29 H 1.08999 * 109.47135 * 59.99595 * 1 2 3 30 30 H 1.08995 * 109.47164 * 90.00249 * 7 6 4 31 31 H 1.09001 * 109.47259 * 209.99911 * 7 6 4 32 32 H 1.08994 * 109.47215 * 329.99870 * 7 6 4 33 33 H 1.08992 * 109.47339 * 209.99952 * 8 6 4 34 34 H 1.09002 * 109.46981 * 330.00643 * 8 6 4 35 35 H 0.96999 * 119.99675 * 180.02562 * 12 11 9 36 36 H 1.09003 * 109.45933 * 305.85422 * 18 17 2 37 37 H 1.08997 * 109.46379 * 65.83479 * 18 17 2 38 38 H 1.08998 * 109.58275 * 180.90900 * 19 18 17 39 39 H 1.09001 * 109.48312 * 60.74605 * 19 18 17 40 40 H 1.08994 * 109.52511 * 297.69098 * 20 19 18 41 41 H 1.09001 * 109.52607 * 177.56013 * 20 19 18 42 42 H 1.09005 * 109.46857 * 55.00436 * 23 21 20 43 43 H 1.09000 * 109.47469 * 175.00067 * 23 21 20 44 44 H 1.09000 * 109.46678 * 299.99506 * 24 23 21 45 45 H 1.09000 * 109.47160 * 59.99354 * 24 23 21 46 46 H 0.96700 * 114.00296 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46402 * 54.14115 * 26 17 2 48 48 H 1.09007 * 109.46102 * 294.17676 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3245 -1.8862 1.1750 6 7 2.1569 -0.0392 2.3925 7 6 1.8044 1.3812 2.4593 8 6 2.6447 -0.7299 3.5888 9 6 4.1462 -0.6195 3.6554 10 1 4.6834 -0.0884 2.8836 11 6 4.8342 -1.1976 4.7012 12 7 4.1801 -1.8448 5.6407 13 14 6.6954 -1.0614 4.7833 14 1 7.0846 0.3704 4.8456 15 1 7.1899 -1.7614 5.9961 16 1 7.2912 -1.6843 3.5741 17 7 2.0197 -0.6925 -1.1995 18 6 1.4071 -0.1386 -2.4138 19 6 1.8261 -0.9751 -3.6267 20 6 3.3523 -0.9579 -3.7475 21 6 3.9664 -1.4943 -2.4514 22 1 3.6573 -2.5291 -2.3033 23 6 5.4922 -1.4250 -2.5421 24 6 5.9812 -2.3691 -3.6423 25 8 7.4061 -2.3039 -3.7275 26 6 3.4854 -0.6431 -1.2742 27 1 -0.3633 -1.0275 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.7521 1.4824 2.7245 31 1 2.4181 1.8727 3.2143 32 1 1.9810 1.8454 1.4891 33 1 2.2071 -0.2728 4.4761 34 1 2.3593 -1.7810 3.5432 35 1 4.6641 -2.2512 6.3766 36 1 0.3218 -0.1604 -2.3154 37 1 1.7388 0.8906 -2.5509 38 1 1.3847 -0.5548 -4.5303 39 1 1.4828 -2.0014 -3.4966 40 1 3.6929 0.0636 -3.9163 41 1 3.6587 -1.5869 -4.5833 42 1 5.7962 -0.4049 -2.7771 43 1 5.9269 -1.7229 -1.5880 44 1 5.6772 -3.3891 -3.4073 45 1 5.5465 -2.0711 -4.5965 46 1 7.7864 -2.8786 -4.4058 47 1 3.9095 -1.0312 -0.3481 48 1 3.8072 0.3886 -1.4165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609204022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:43 Heat of formation + Delta-G solvation = -88.072261 kcal Electronic energy + Delta-G solvation = -25862.198574 eV Core-core repulsion = 22337.863167 eV Total energy + Delta-G solvation = -3524.335407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95926 -38.39809 -36.99079 -34.85404 -34.63120 -32.63483 -32.13562 -30.38272 -28.24926 -27.58590 -25.88356 -25.07584 -23.62086 -22.91725 -22.03432 -20.52754 -19.70793 -18.21579 -17.44773 -16.64999 -16.43720 -16.05575 -15.52682 -15.14101 -14.94575 -14.37897 -14.33192 -14.12306 -13.79836 -13.49146 -13.33306 -13.17873 -12.93508 -12.60420 -12.21107 -12.04650 -11.90648 -11.80378 -11.62375 -11.48038 -11.41987 -11.25604 -11.13192 -11.01819 -10.86126 -10.59741 -10.52764 -10.27854 -10.22917 -10.11917 -9.91231 -9.60304 -8.75474 -8.40460 -8.04356 -7.58168 -6.01484 -4.06211 3.33912 3.38367 3.39566 3.47186 3.71466 4.03769 4.32636 4.48119 4.67970 4.81817 4.85894 5.01477 5.11364 5.13330 5.20824 5.29917 5.30388 5.33407 5.37318 5.48085 5.55315 5.59116 5.62575 5.69125 5.77602 5.82125 5.85848 5.88227 5.92591 5.97872 6.00647 6.15320 6.17020 6.18054 6.30246 6.40570 6.48341 7.01634 7.21309 7.27904 7.48397 7.50943 7.59273 7.95223 8.26594 8.48002 8.93767 9.19060 9.59011 11.06482 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.005196 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.984505 B = 5387.002909 C = 7468.323098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 H 0.056 0.944 4 C 0.509 3.491 5 O -0.520 6.520 6 N -0.604 5.604 7 C 0.082 3.918 8 C 0.247 3.753 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.514 5.514 18 C 0.051 3.949 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.077 4.077 22 H 0.083 0.917 23 C -0.116 4.116 24 C 0.077 3.923 25 O -0.576 6.576 26 C 0.062 3.938 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.376 0.624 47 H 0.089 0.911 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 5.170 -19.308 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.074 0.926 4 C 0.294 3.706 5 O -0.395 6.395 6 N -0.338 5.338 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.201 1.201 17 N -0.239 5.239 18 C -0.077 4.077 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.096 4.096 22 H 0.102 0.898 23 C -0.154 4.154 24 C -0.001 4.001 25 O -0.381 6.381 26 C -0.066 4.066 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.222 0.778 47 H 0.108 0.892 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.909 4.373 -18.597 19.725 hybrid contribution 1.377 0.661 -0.299 1.556 sum -3.532 5.033 -18.896 19.872 Atomic orbital electron populations 1.21805 0.92578 1.03442 1.01993 1.21680 0.96843 0.95875 0.90474 0.92615 1.20043 0.79084 0.87566 0.83884 1.90670 1.49001 1.15769 1.84094 1.48177 1.64172 1.09822 1.11613 1.21679 0.99576 0.83151 1.01799 1.19257 0.94101 0.93615 0.80238 1.21380 0.91915 1.34840 1.08274 0.92670 1.24920 0.98602 0.94973 0.95499 1.69923 1.35824 1.35506 1.12132 0.86594 0.85386 0.78143 0.77524 1.20290 1.21148 1.20121 1.61564 1.06583 1.55256 1.00490 1.22222 0.99811 0.95764 0.89858 1.21588 0.95738 1.01281 0.96653 1.21719 0.95545 1.00899 0.97346 1.21052 0.93109 1.01182 0.94265 0.89814 1.21519 0.94905 0.99769 0.99245 1.22245 0.80494 0.98987 0.98329 1.86503 1.20989 1.69143 1.61464 1.22127 0.87034 0.97566 0.99868 0.91080 0.91647 0.91809 0.93767 0.90831 0.92638 0.95116 0.93858 0.92688 0.90216 0.95334 0.91746 0.90942 0.92341 0.91962 0.91488 0.90636 0.93558 0.93693 0.77757 0.89221 0.95464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.67 37.15 0.32 -1.48 16 2 C 0.06 0.99 1.80 -68.86 -0.12 0.87 16 3 H 0.06 0.81 6.07 -51.93 -0.32 0.50 16 4 C 0.51 10.80 5.88 -10.99 -0.06 10.74 16 5 O -0.52 -13.38 15.24 5.56 0.08 -13.30 16 6 N -0.60 -13.03 2.86 -182.96 -0.52 -13.55 16 7 C 0.08 1.33 9.89 59.85 0.59 1.92 16 8 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 9 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 13 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 N -0.51 -7.85 4.21 -227.99 -0.96 -8.81 16 18 C 0.05 0.59 5.05 -3.76 -0.02 0.57 16 19 C -0.11 -1.16 6.11 -26.58 -0.16 -1.32 16 20 C -0.12 -1.22 4.97 -26.61 -0.13 -1.35 16 21 C -0.08 -1.02 2.35 -90.54 -0.21 -1.23 16 22 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 23 C -0.12 -1.52 5.06 -26.73 -0.14 -1.66 16 24 C 0.08 0.85 6.80 37.16 0.25 1.10 16 25 O -0.58 -6.75 13.66 -35.23 -0.48 -7.24 16 26 C 0.06 0.98 4.46 -3.84 -0.02 0.96 16 27 H 0.07 1.01 8.14 -51.94 -0.42 0.58 16 28 H 0.06 0.79 7.63 -51.93 -0.40 0.39 16 29 H 0.06 0.64 6.19 -51.93 -0.32 0.32 16 30 H 0.04 0.61 7.99 -51.93 -0.41 0.19 16 31 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.06 0.76 5.86 -51.93 -0.30 0.45 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 0.83 5.85 -51.93 -0.30 0.53 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.56 6.69 -51.93 -0.35 0.21 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.04 0.41 6.62 -51.93 -0.34 0.07 16 46 H 0.38 2.50 9.12 45.56 0.42 2.92 16 47 H 0.09 1.80 6.43 -51.93 -0.33 1.46 16 48 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -34.63 370.72 -8.39 -43.01 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.66 Total: 1.30 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.15 Total: 1.96 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.75 Total: -48.53 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.40 Total: -20.53 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.63 -8.39 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609204022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.059 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds