Wall clock time and date at job start Tue Mar 31 2020 04:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 C 1.50701 * 109.47185 * 119.99973 * 2 1 3 5 5 O 1.21282 * 119.99688 * 95.21760 * 4 2 1 6 6 N 1.34771 * 120.00271 * 275.21791 * 4 2 1 7 7 C 1.46502 * 119.99864 * 359.97438 * 6 4 2 8 8 C 1.46498 * 120.00223 * 179.97438 * 6 4 2 9 9 C 1.50704 * 109.46963 * 90.00181 * 8 6 4 10 10 H 1.07997 * 120.00093 * 359.97438 * 9 8 6 11 11 C 1.37883 * 119.99853 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99899 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99902 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47102 * 59.99810 * 13 11 9 15 15 H 1.48503 * 109.47122 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47188 * 299.99541 * 13 11 9 17 17 N 1.46908 * 109.47256 * 240.00251 * 2 1 3 18 18 C 1.46846 * 110.99803 * 52.43946 * 17 2 1 19 19 C 1.53175 * 109.55529 * 185.84351 * 18 17 2 20 20 C 1.53110 * 109.20600 * 300.85828 * 19 18 17 21 21 C 1.53125 * 109.21373 * 57.62383 * 20 19 18 22 22 H 1.09007 * 109.50024 * 62.29336 * 21 20 19 23 23 C 1.53001 * 109.50539 * 182.36846 * 21 20 19 24 24 C 1.53001 * 109.47445 * 295.00523 * 23 21 20 25 25 O 1.42898 * 109.47369 * 179.97438 * 24 23 21 26 26 C 1.46844 * 111.00194 * 176.65118 * 17 2 1 27 27 H 1.08989 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47201 * 300.00123 * 1 2 3 29 29 H 1.08999 * 109.47135 * 59.99595 * 1 2 3 30 30 H 1.08995 * 109.47164 * 90.00249 * 7 6 4 31 31 H 1.09001 * 109.47259 * 209.99911 * 7 6 4 32 32 H 1.08994 * 109.47215 * 329.99870 * 7 6 4 33 33 H 1.08992 * 109.47339 * 209.99952 * 8 6 4 34 34 H 1.09002 * 109.46981 * 330.00643 * 8 6 4 35 35 H 0.96999 * 119.99675 * 180.02562 * 12 11 9 36 36 H 1.09003 * 109.45933 * 305.85422 * 18 17 2 37 37 H 1.08997 * 109.46379 * 65.83479 * 18 17 2 38 38 H 1.08998 * 109.58275 * 180.90900 * 19 18 17 39 39 H 1.09001 * 109.48312 * 60.74605 * 19 18 17 40 40 H 1.08994 * 109.52511 * 297.69098 * 20 19 18 41 41 H 1.09001 * 109.52607 * 177.56013 * 20 19 18 42 42 H 1.09005 * 109.46857 * 55.00436 * 23 21 20 43 43 H 1.09000 * 109.47469 * 175.00067 * 23 21 20 44 44 H 1.09000 * 109.46678 * 299.99506 * 24 23 21 45 45 H 1.09000 * 109.47160 * 59.99354 * 24 23 21 46 46 H 0.96700 * 114.00296 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46402 * 54.14115 * 26 17 2 48 48 H 1.09007 * 109.46102 * 294.17676 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3245 -1.8862 1.1750 6 7 2.1569 -0.0392 2.3925 7 6 1.8044 1.3812 2.4593 8 6 2.6447 -0.7299 3.5888 9 6 4.1462 -0.6195 3.6554 10 1 4.6834 -0.0884 2.8836 11 6 4.8342 -1.1976 4.7012 12 7 4.1801 -1.8448 5.6407 13 14 6.6954 -1.0614 4.7833 14 1 7.0846 0.3704 4.8456 15 1 7.1899 -1.7614 5.9961 16 1 7.2912 -1.6843 3.5741 17 7 2.0197 -0.6925 -1.1995 18 6 1.4071 -0.1386 -2.4138 19 6 1.8261 -0.9751 -3.6267 20 6 3.3523 -0.9579 -3.7475 21 6 3.9664 -1.4943 -2.4514 22 1 3.6573 -2.5291 -2.3033 23 6 5.4922 -1.4250 -2.5421 24 6 5.9812 -2.3691 -3.6423 25 8 7.4061 -2.3039 -3.7275 26 6 3.4854 -0.6431 -1.2742 27 1 -0.3633 -1.0275 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.7521 1.4824 2.7245 31 1 2.4181 1.8727 3.2143 32 1 1.9810 1.8454 1.4891 33 1 2.2071 -0.2728 4.4761 34 1 2.3593 -1.7810 3.5432 35 1 4.6641 -2.2512 6.3766 36 1 0.3218 -0.1604 -2.3154 37 1 1.7388 0.8906 -2.5509 38 1 1.3847 -0.5548 -4.5303 39 1 1.4828 -2.0014 -3.4966 40 1 3.6929 0.0636 -3.9163 41 1 3.6587 -1.5869 -4.5833 42 1 5.7962 -0.4049 -2.7771 43 1 5.9269 -1.7229 -1.5880 44 1 5.6772 -3.3891 -3.4073 45 1 5.5465 -2.0711 -4.5965 46 1 7.7864 -2.8786 -4.4058 47 1 3.9095 -1.0312 -0.3481 48 1 3.8072 0.3886 -1.4165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609204022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:42 Heat of formation + Delta-G solvation = -114.866856 kcal Electronic energy + Delta-G solvation = -25863.360475 eV Core-core repulsion = 22337.863167 eV Total energy + Delta-G solvation = -3525.497308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30937 -39.73354 -37.96030 -36.55694 -35.89810 -34.71347 -33.17201 -31.55117 -29.86589 -28.90447 -27.39949 -26.33927 -25.21844 -23.95084 -23.45758 -21.68395 -20.70038 -19.77322 -18.72156 -18.34982 -18.06665 -17.41772 -16.80064 -16.50930 -16.24925 -16.02842 -15.63623 -15.29450 -14.96315 -14.74758 -14.50682 -14.21717 -14.14311 -14.03407 -13.87016 -13.48960 -13.24162 -13.16771 -13.01667 -12.85249 -12.80562 -12.61595 -12.50336 -12.44551 -12.25267 -12.21669 -11.92233 -11.74702 -11.56698 -11.24085 -11.20548 -10.79627 -10.67044 -10.41296 -9.41372 -9.19681 -8.24938 -6.39685 1.32173 1.36773 1.43850 1.84572 2.25325 2.38241 2.83881 3.04181 3.38805 3.65063 3.72933 3.81984 3.95880 4.06667 4.08214 4.20614 4.25739 4.33111 4.43559 4.45488 4.48362 4.57993 4.65131 4.65792 4.72691 4.79383 4.83550 4.85298 4.90354 4.94200 4.99335 5.03234 5.07274 5.14801 5.20915 5.23679 5.25907 5.38413 5.52155 5.53644 5.82280 6.00068 6.04381 6.22589 6.67860 6.80938 6.89076 7.26605 7.53500 8.81864 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.005196 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.984505 B = 5387.002909 C = 7468.323098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.077 0.923 4 C 0.500 3.500 5 O -0.580 6.580 6 N -0.613 5.613 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.542 4.542 10 H 0.048 0.952 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.259 1.259 15 H -0.274 1.274 16 H -0.282 1.282 17 N -0.534 5.534 18 C 0.048 3.952 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.070 4.070 22 H 0.062 0.938 23 C -0.115 4.115 24 C 0.081 3.919 25 O -0.599 6.599 26 C 0.067 3.933 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.024 0.976 34 H -0.005 1.005 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.398 0.602 47 H 0.032 0.968 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 7.423 -22.199 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.037 4.037 3 H 0.094 0.906 4 C 0.288 3.712 5 O -0.459 6.459 6 N -0.345 5.345 7 C -0.065 4.065 8 C 0.141 3.859 9 C -0.580 4.580 10 H 0.066 0.934 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.787 3.213 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.207 1.207 17 N -0.260 5.260 18 C -0.078 4.078 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.089 4.089 22 H 0.081 0.919 23 C -0.154 4.154 24 C 0.004 3.996 25 O -0.408 6.408 26 C -0.061 4.061 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.013 0.987 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.248 0.752 47 H 0.051 0.949 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.379 6.671 -21.515 23.158 hybrid contribution 1.497 -0.070 0.614 1.619 sum -3.883 6.601 -20.900 22.259 Atomic orbital electron populations 1.21828 0.89853 1.03022 1.04440 1.21637 0.98675 0.95576 0.87855 0.90598 1.21173 0.77729 0.87180 0.85167 1.90628 1.51483 1.18671 1.85133 1.48210 1.63919 1.12002 1.10394 1.21970 1.01203 0.79738 1.03557 1.18702 0.93358 0.91531 0.82323 1.21625 0.93111 1.35063 1.08217 0.93381 1.25813 1.03654 0.94384 0.95038 1.70037 1.37818 1.36077 1.12694 0.85546 0.79233 0.79084 0.77439 1.18357 1.19928 1.20737 1.61531 1.06100 1.56503 1.01857 1.22405 1.00481 0.96588 0.88327 1.21620 0.95407 1.00690 0.97287 1.21689 0.95719 1.01629 0.95703 1.20965 0.93188 0.99620 0.95166 0.91949 1.21489 0.94921 1.00556 0.98403 1.22201 0.80485 0.98349 0.98598 1.86444 1.21355 1.70107 1.62862 1.21975 0.87793 0.98023 0.98347 0.92958 0.90594 0.87931 0.90715 0.91588 0.89437 0.95786 0.98673 0.92338 0.88569 0.93810 0.88487 0.92095 0.91302 0.89902 0.91135 0.94408 0.93577 0.90765 0.75247 0.94899 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.67 71.98 0.62 -2.47 16 2 C 0.07 2.25 1.80 44.17 0.08 2.33 16 3 H 0.08 2.00 6.07 -2.39 -0.01 1.99 16 4 C 0.50 22.01 5.88 87.66 0.52 22.53 16 5 O -0.58 -32.08 15.24 -3.04 -0.05 -32.13 16 6 N -0.61 -27.23 2.86 -851.15 -2.43 -29.66 16 7 C 0.08 2.40 9.89 127.77 1.26 3.67 16 8 C 0.26 14.74 5.16 85.63 0.44 15.18 16 9 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 10 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 11 C 0.01 0.61 5.46 84.66 0.46 1.07 16 12 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 13 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 17 N -0.53 -15.93 4.21 -875.23 -3.69 -19.62 16 18 C 0.05 0.95 5.05 86.37 0.44 1.39 16 19 C -0.11 -1.88 6.11 30.69 0.19 -1.69 16 20 C -0.11 -1.96 4.97 30.67 0.15 -1.81 16 21 C -0.07 -1.86 2.35 -10.74 -0.03 -1.88 16 22 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 23 C -0.12 -3.08 5.06 30.59 0.15 -2.92 16 24 C 0.08 1.69 6.80 71.98 0.49 2.18 16 25 O -0.60 -13.43 13.66 -148.98 -2.03 -15.46 16 26 C 0.07 2.17 4.46 86.32 0.39 2.55 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.59 7.63 -2.38 -0.02 1.58 16 29 H 0.10 1.59 6.19 -2.39 -0.01 1.58 16 30 H 0.07 1.88 7.99 -2.39 -0.02 1.86 16 31 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 32 H 0.09 2.14 5.86 -2.39 -0.01 2.13 16 33 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 34 H 0.00 -0.32 7.42 -2.39 -0.02 -0.33 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.10 1.58 5.85 -2.39 -0.01 1.57 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.17 6.69 -2.39 -0.02 1.15 16 42 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 1.13 6.62 -2.39 -0.02 1.11 16 46 H 0.40 4.66 9.12 -74.06 -0.68 3.98 16 47 H 0.03 1.42 6.43 -2.39 -0.02 1.41 16 48 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -82.03 370.72 -0.22 -82.25 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.26 Total: 15.35 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.41 Total: 7.93 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -5.83 Total: -106.54 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -2.08 Total: -47.59 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -82.03 -0.22 -82.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609204022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.618 kcal (2) G-P(sol) polarization free energy of solvation -82.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds