Wall clock time and date at job start Tue Mar 31 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 C 1.46495 * 120.00130 * 90.00260 * 3 2 1 5 5 C 1.50698 * 109.47550 * 89.99540 * 4 3 2 6 6 H 1.07999 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99588 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47010 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47381 * 119.99678 * 9 7 5 12 12 H 1.48503 * 109.47451 * 239.99772 * 9 7 5 13 13 C 1.34779 * 119.99884 * 269.99334 * 3 2 1 14 14 O 1.21284 * 119.99951 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00208 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47527 * 173.74550 * 15 13 3 17 17 C 1.46847 * 111.00327 * 169.40463 * 16 15 13 18 18 C 1.53039 * 109.52144 * 185.84111 * 17 16 15 19 19 C 1.53112 * 109.28098 * 300.81810 * 18 17 16 20 20 C 1.52995 * 109.57839 * 177.59426 * 19 18 17 21 21 C 1.52997 * 109.47098 * 65.28282 * 20 19 18 22 22 O 1.42901 * 109.47085 * 180.02562 * 21 20 19 23 23 C 1.53117 * 109.16182 * 57.65453 * 19 18 17 24 24 C 1.46852 * 110.99994 * 293.61539 * 16 15 13 25 25 H 1.09007 * 109.46745 * 60.00513 * 1 2 3 26 26 H 1.08998 * 109.47562 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47363 * 300.00368 * 1 2 3 28 28 H 1.09000 * 109.46724 * 239.99390 * 2 1 3 29 29 H 1.08998 * 109.46697 * 120.00331 * 2 1 3 30 30 H 1.09000 * 109.47560 * 209.99688 * 4 3 2 31 31 H 1.09002 * 109.47315 * 329.99586 * 4 3 2 32 32 H 0.97003 * 119.99477 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47428 * 293.74826 * 15 13 3 34 34 H 1.09003 * 109.47076 * 53.74376 * 15 13 3 35 35 H 1.09000 * 109.45958 * 305.85739 * 17 16 15 36 36 H 1.09001 * 109.46219 * 65.82297 * 17 16 15 37 37 H 1.08999 * 109.49784 * 180.87485 * 18 17 16 38 38 H 1.09000 * 109.50054 * 60.76166 * 18 17 16 39 39 H 1.09004 * 109.51956 * 297.75405 * 19 18 17 40 40 H 1.08999 * 109.47593 * 185.28537 * 20 19 18 41 41 H 1.09000 * 109.46975 * 305.28811 * 20 19 18 42 42 H 1.09004 * 109.47422 * 300.00194 * 21 20 19 43 43 H 1.08996 * 109.47253 * 60.00466 * 21 20 19 44 44 H 0.96701 * 114.00059 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.50798 * 182.40542 * 23 19 18 46 46 H 1.09003 * 109.53309 * 62.30609 * 23 19 18 47 47 H 1.08998 * 109.46100 * 294.17598 * 24 16 15 48 48 H 1.08996 * 109.46187 * 54.15260 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3426 1.2302 1.0963 7 6 4.1491 2.3896 2.8780 8 7 3.3490 3.1257 3.6181 9 14 5.9130 2.0955 3.4177 10 1 6.6004 1.2394 2.4177 11 1 6.6209 3.3964 3.5263 12 1 5.9200 1.4164 4.7383 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3062 -2.4723 16 7 2.1653 2.2497 -3.5847 17 6 2.1767 1.5469 -4.8740 18 6 2.5039 2.5376 -5.9937 19 6 1.4524 3.6505 -6.0072 20 6 1.8062 4.6770 -7.0851 21 6 1.7096 4.0220 -8.4645 22 8 2.0406 4.9807 -9.4712 23 6 1.4270 4.3347 -4.6377 24 6 1.1311 3.2919 -3.5573 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0956 3.1410 1.1384 31 1 1.5817 1.6877 2.0284 32 1 3.6749 3.5156 4.4443 33 1 2.6980 0.4833 -2.5802 34 1 0.9740 0.9153 -2.4830 35 1 2.9316 0.7609 -4.8524 36 1 1.1971 1.1045 -5.0552 37 1 2.4970 2.0186 -6.9522 38 1 3.4893 2.9700 -5.8204 39 1 0.4723 3.2229 -6.2190 40 1 1.1111 5.5148 -7.0312 41 1 2.8224 5.0370 -6.9244 42 1 2.4047 3.1842 -8.5184 43 1 0.6934 3.6620 -8.6253 44 1 1.9998 4.6340 -10.3730 45 1 0.6507 5.0997 -4.6274 46 1 2.3952 4.7959 -4.4427 47 1 0.1564 2.8414 -3.7446 48 1 1.1266 3.7735 -2.5795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609312157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:42 Heat of formation + Delta-G solvation = -95.734612 kcal Electronic energy + Delta-G solvation = -25125.479141 eV Core-core repulsion = 21600.811470 eV Total energy + Delta-G solvation = -3524.667671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.74515 -38.53123 -37.12175 -35.26956 -34.49441 -32.75962 -30.86600 -30.30879 -30.00225 -27.76586 -26.03366 -24.04838 -23.07077 -22.90885 -22.21596 -21.08659 -19.76258 -18.26801 -17.64260 -16.59701 -16.29196 -15.90433 -15.61504 -15.19945 -14.98269 -14.55914 -14.29717 -14.26236 -14.09243 -13.55753 -13.31440 -13.27988 -12.82547 -12.74472 -12.43592 -12.07224 -11.96929 -11.86112 -11.71512 -11.53449 -11.30088 -11.16345 -11.11937 -10.88111 -10.75484 -10.68266 -10.52752 -10.38190 -10.32259 -10.09507 -10.06630 -9.56175 -8.81047 -8.40560 -8.09131 -7.59009 -6.01174 -4.05325 3.32060 3.39569 3.43085 3.51506 3.69088 3.90226 4.24007 4.48618 4.58923 4.68864 4.82032 4.94620 5.04734 5.12486 5.21225 5.26267 5.30637 5.33366 5.38352 5.40281 5.45287 5.54715 5.59159 5.61406 5.68683 5.76930 5.78558 5.84671 5.86178 5.99456 6.02115 6.04185 6.16907 6.23417 6.29299 6.43779 6.47706 7.00714 7.20637 7.25460 7.31622 7.48912 7.61318 7.96235 8.27797 8.49267 8.95499 9.19534 9.59927 11.06919 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.003085 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.866613 B = 9074.516476 C = 9729.985868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.518 5.518 17 C 0.057 3.943 18 C -0.112 4.112 19 C -0.086 4.086 20 C -0.114 4.114 21 C 0.074 3.926 22 O -0.577 6.577 23 C -0.107 4.107 24 C 0.055 3.945 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.377 0.623 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.023 0.977 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 -5.431 -21.163 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.291 3.709 14 O -0.397 6.397 15 C -0.094 4.094 16 N -0.243 5.243 17 C -0.071 4.071 18 C -0.150 4.150 19 C -0.104 4.104 20 C -0.152 4.152 21 C -0.004 4.004 22 O -0.382 6.382 23 C -0.145 4.145 24 C -0.072 4.072 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.224 0.776 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.041 0.959 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.783 -4.092 -20.381 21.867 hybrid contribution 0.063 -1.133 -0.111 1.140 sum -6.720 -5.225 -20.492 22.190 Atomic orbital electron populations 1.22225 0.96982 1.01296 1.02193 1.21377 0.93341 0.84441 1.02535 1.48273 1.64211 1.13202 1.07737 1.19235 0.96196 0.93590 0.78133 1.21480 0.96960 1.31624 1.06085 0.92457 1.24939 0.97820 0.94984 0.96454 1.69947 1.35579 1.33653 1.14337 0.86451 0.84731 0.78055 0.78229 1.19805 1.20889 1.21048 1.20144 0.78876 0.87173 0.84683 1.90656 1.44458 1.17826 1.86803 1.22062 1.00910 0.95386 0.90996 1.61513 1.48969 1.12724 1.01106 1.22087 0.99742 0.96063 0.89207 1.21697 0.99969 0.96213 0.97122 1.21161 0.98878 0.95540 0.94844 1.21554 1.03185 0.98586 0.91856 1.22295 0.98490 0.91085 0.88491 1.86492 1.92769 1.40627 1.18333 1.21578 1.02949 0.97360 0.92604 1.22178 0.90868 0.92961 1.01219 0.93314 0.92253 0.92007 0.91979 0.89969 0.93979 0.95159 0.92840 0.88595 0.92877 0.90798 0.95297 0.91762 0.90652 0.91584 0.91287 0.90941 0.93417 0.93947 0.77643 0.91664 0.90527 0.95887 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.18 37.16 0.38 -1.86 16 2 C 0.11 1.71 5.84 -4.04 -0.02 1.68 16 3 N -0.60 -12.68 2.46 -175.07 -0.43 -13.11 16 4 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 5 C -0.52 -14.95 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.55 7.20 -10.99 -0.08 10.47 16 14 O -0.52 -13.19 14.29 5.55 0.08 -13.11 16 15 C 0.04 0.58 3.91 -4.98 -0.02 0.56 16 16 N -0.52 -7.74 4.35 -236.12 -1.03 -8.77 16 17 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 18 C -0.11 -1.12 5.08 -26.65 -0.14 -1.26 16 19 C -0.09 -0.85 2.25 -90.50 -0.20 -1.05 16 20 C -0.11 -1.10 5.06 -26.74 -0.14 -1.23 16 21 C 0.07 0.60 6.81 37.16 0.25 0.85 16 22 O -0.58 -5.18 13.66 -35.23 -0.48 -5.66 16 23 C -0.11 -1.33 5.38 -26.65 -0.14 -1.47 16 24 C 0.06 0.80 5.12 -3.83 -0.02 0.78 16 25 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.82 6.61 -51.93 -0.34 0.48 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.10 1.33 7.55 -51.93 -0.39 0.94 16 34 H 0.05 0.71 6.83 -51.93 -0.35 0.35 16 35 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.51 6.71 -51.93 -0.35 0.16 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.34 6.64 -51.93 -0.34 0.00 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.38 1.58 9.12 45.56 0.42 2.00 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.09 1.68 6.06 -51.93 -0.31 1.36 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -34.47 375.08 -8.97 -43.44 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.89 Total: -0.35 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.60 Total: 0.92 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.72 Total: -48.01 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.40 Total: -18.78 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.47 -8.97 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609312157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.295 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds