Wall clock time and date at job start Tue Mar 31 2020 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 C 1.46495 * 120.00130 * 90.00260 * 3 2 1 5 5 C 1.50698 * 109.47550 * 89.99540 * 4 3 2 6 6 H 1.07999 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99588 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47010 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47381 * 119.99678 * 9 7 5 12 12 H 1.48503 * 109.47451 * 239.99772 * 9 7 5 13 13 C 1.34779 * 119.99884 * 269.99334 * 3 2 1 14 14 O 1.21284 * 119.99951 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00208 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47527 * 173.74550 * 15 13 3 17 17 C 1.46847 * 111.00327 * 169.40463 * 16 15 13 18 18 C 1.53039 * 109.52144 * 185.84111 * 17 16 15 19 19 C 1.53112 * 109.28098 * 300.81810 * 18 17 16 20 20 C 1.52995 * 109.57839 * 177.59426 * 19 18 17 21 21 C 1.52997 * 109.47098 * 65.28282 * 20 19 18 22 22 O 1.42901 * 109.47085 * 180.02562 * 21 20 19 23 23 C 1.53117 * 109.16182 * 57.65453 * 19 18 17 24 24 C 1.46852 * 110.99994 * 293.61539 * 16 15 13 25 25 H 1.09007 * 109.46745 * 60.00513 * 1 2 3 26 26 H 1.08998 * 109.47562 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47363 * 300.00368 * 1 2 3 28 28 H 1.09000 * 109.46724 * 239.99390 * 2 1 3 29 29 H 1.08998 * 109.46697 * 120.00331 * 2 1 3 30 30 H 1.09000 * 109.47560 * 209.99688 * 4 3 2 31 31 H 1.09002 * 109.47315 * 329.99586 * 4 3 2 32 32 H 0.97003 * 119.99477 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47428 * 293.74826 * 15 13 3 34 34 H 1.09003 * 109.47076 * 53.74376 * 15 13 3 35 35 H 1.09000 * 109.45958 * 305.85739 * 17 16 15 36 36 H 1.09001 * 109.46219 * 65.82297 * 17 16 15 37 37 H 1.08999 * 109.49784 * 180.87485 * 18 17 16 38 38 H 1.09000 * 109.50054 * 60.76166 * 18 17 16 39 39 H 1.09004 * 109.51956 * 297.75405 * 19 18 17 40 40 H 1.08999 * 109.47593 * 185.28537 * 20 19 18 41 41 H 1.09000 * 109.46975 * 305.28811 * 20 19 18 42 42 H 1.09004 * 109.47422 * 300.00194 * 21 20 19 43 43 H 1.08996 * 109.47253 * 60.00466 * 21 20 19 44 44 H 0.96701 * 114.00059 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.50798 * 182.40542 * 23 19 18 46 46 H 1.09003 * 109.53309 * 62.30609 * 23 19 18 47 47 H 1.08998 * 109.46100 * 294.17598 * 24 16 15 48 48 H 1.08996 * 109.46187 * 54.15260 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3426 1.2302 1.0963 7 6 4.1491 2.3896 2.8780 8 7 3.3490 3.1257 3.6181 9 14 5.9130 2.0955 3.4177 10 1 6.6004 1.2394 2.4177 11 1 6.6209 3.3964 3.5263 12 1 5.9200 1.4164 4.7383 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3062 -2.4723 16 7 2.1653 2.2497 -3.5847 17 6 2.1767 1.5469 -4.8740 18 6 2.5039 2.5376 -5.9937 19 6 1.4524 3.6505 -6.0072 20 6 1.8062 4.6770 -7.0851 21 6 1.7096 4.0220 -8.4645 22 8 2.0406 4.9807 -9.4712 23 6 1.4270 4.3347 -4.6377 24 6 1.1311 3.2919 -3.5573 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0956 3.1410 1.1384 31 1 1.5817 1.6877 2.0284 32 1 3.6749 3.5156 4.4443 33 1 2.6980 0.4833 -2.5802 34 1 0.9740 0.9153 -2.4830 35 1 2.9316 0.7609 -4.8524 36 1 1.1971 1.1045 -5.0552 37 1 2.4970 2.0186 -6.9522 38 1 3.4893 2.9700 -5.8204 39 1 0.4723 3.2229 -6.2190 40 1 1.1111 5.5148 -7.0312 41 1 2.8224 5.0370 -6.9244 42 1 2.4047 3.1842 -8.5184 43 1 0.6934 3.6620 -8.6253 44 1 1.9998 4.6340 -10.3730 45 1 0.6507 5.0997 -4.6274 46 1 2.3952 4.7959 -4.4427 47 1 0.1564 2.8414 -3.7446 48 1 1.1266 3.7735 -2.5795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609312157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:41 Heat of formation + Delta-G solvation = -121.616407 kcal Electronic energy + Delta-G solvation = -25126.601460 eV Core-core repulsion = 21600.811470 eV Total energy + Delta-G solvation = -3525.789990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.05880 -39.75042 -37.86981 -36.88000 -35.52826 -34.85989 -31.82438 -31.70491 -31.12968 -29.36633 -27.49007 -25.22745 -24.55563 -23.95688 -23.61959 -21.98786 -20.65399 -19.85025 -18.61648 -18.28635 -17.91395 -17.31729 -16.60182 -16.49995 -16.30654 -15.85839 -15.61681 -15.24122 -15.19005 -14.75775 -14.59648 -14.42597 -14.15228 -13.97082 -13.75868 -13.46536 -13.29908 -13.08283 -12.97965 -12.77710 -12.70058 -12.59681 -12.46967 -12.20303 -12.15105 -12.08185 -11.88195 -11.67658 -11.60128 -11.23554 -11.18627 -10.75399 -10.65141 -10.43483 -9.40989 -9.15245 -8.22334 -6.36969 1.35101 1.38044 1.49789 1.90735 2.25625 2.41714 3.02682 3.07020 3.30833 3.70408 3.84179 3.84706 4.02611 4.11880 4.24305 4.30278 4.31386 4.32086 4.44761 4.48175 4.52736 4.55608 4.63701 4.64067 4.66468 4.75908 4.89949 4.93761 4.98158 5.00749 5.04587 5.05920 5.12910 5.18620 5.22586 5.27142 5.31449 5.38125 5.53639 5.59420 5.87910 6.04550 6.07939 6.25602 6.72053 6.86859 6.94320 7.29748 7.58078 8.84771 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.003085 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.866613 B = 9074.516476 C = 9729.985868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.495 3.505 14 O -0.580 6.580 15 C 0.053 3.947 16 N -0.546 5.546 17 C 0.057 3.943 18 C -0.110 4.110 19 C -0.074 4.074 20 C -0.113 4.113 21 C 0.076 3.924 22 O -0.601 6.601 23 C -0.105 4.105 24 C 0.060 3.940 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.071 0.929 30 H -0.007 1.007 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.397 0.603 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -8.298 -23.596 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.283 3.717 14 O -0.459 6.459 15 C -0.077 4.077 16 N -0.271 5.271 17 C -0.070 4.070 18 C -0.147 4.147 19 C -0.093 4.093 20 C -0.151 4.151 21 C -0.001 4.001 22 O -0.410 6.410 23 C -0.143 4.143 24 C -0.068 4.068 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.011 0.989 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.247 0.753 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.070 -7.018 -22.852 24.929 hybrid contribution 0.111 -0.199 0.634 0.674 sum -6.959 -7.216 -22.218 24.375 Atomic orbital electron populations 1.22146 0.94723 1.03452 1.01447 1.21724 0.95173 0.81428 1.03885 1.48313 1.64343 1.15154 1.06184 1.18642 0.95188 0.91349 0.80539 1.21738 0.97905 1.31724 1.06345 0.92971 1.25879 1.02430 0.94533 0.96504 1.70067 1.37712 1.34397 1.14828 0.85361 0.79001 0.77977 0.78418 1.19076 1.20888 1.19297 1.21270 0.77367 0.86740 0.86330 1.90628 1.46958 1.20571 1.87780 1.21961 1.03116 0.94967 0.87706 1.61446 1.49589 1.13413 1.02694 1.22211 1.01362 0.96243 0.87195 1.21708 0.98697 0.96078 0.98246 1.21061 0.99942 0.95387 0.92910 1.21498 1.01848 0.98502 0.93231 1.22282 0.99831 0.90847 0.87180 1.86437 1.92929 1.41702 1.19918 1.21544 1.01537 0.97247 0.93988 1.22032 0.91942 0.93413 0.99410 0.92425 0.88522 0.94439 0.88167 0.91040 0.98910 0.96190 0.92466 0.86275 0.89879 0.89620 0.93064 0.88687 0.92730 0.89677 0.91985 0.92798 0.92141 0.92244 0.75329 0.91021 0.93416 0.93912 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.18 71.98 0.73 -3.17 16 2 C 0.10 3.03 5.84 86.38 0.50 3.54 16 3 N -0.61 -26.18 2.46 -826.18 -2.03 -28.21 16 4 C 0.26 14.66 5.16 85.63 0.44 15.10 16 5 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 9 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 C 0.49 21.07 7.20 87.65 0.63 21.71 16 14 O -0.58 -31.18 14.29 -3.04 -0.04 -31.22 16 15 C 0.05 1.52 3.91 85.56 0.33 1.86 16 16 N -0.55 -15.62 4.35 -900.94 -3.92 -19.53 16 17 C 0.06 1.08 5.46 86.33 0.47 1.55 16 18 C -0.11 -1.90 5.08 30.64 0.16 -1.74 16 19 C -0.07 -1.34 2.25 -10.72 -0.02 -1.36 16 20 C -0.11 -2.04 5.06 30.59 0.15 -1.88 16 21 C 0.08 1.03 6.81 71.98 0.49 1.52 16 22 O -0.60 -9.62 13.66 -148.98 -2.04 -11.66 16 23 C -0.11 -2.64 5.38 30.65 0.16 -2.48 16 24 C 0.06 1.74 5.12 86.33 0.44 2.18 16 25 H 0.06 1.31 7.12 -2.38 -0.02 1.29 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 2.28 6.61 -2.39 -0.02 2.27 16 29 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 30 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 31 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.12 2.88 7.55 -2.39 -0.02 2.86 16 34 H 0.08 1.90 6.83 -2.39 -0.02 1.88 16 35 H 0.09 1.45 8.01 -2.39 -0.02 1.43 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.10 6.71 -2.39 -0.02 1.08 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 0.66 6.64 -2.38 -0.02 0.64 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.40 2.42 9.12 -74.06 -0.68 1.74 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 1.82 6.06 -2.39 -0.01 1.81 16 Total: -1.00 -80.66 375.08 -0.26 -80.92 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.25 Total: 12.97 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.20 Total: 5.98 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -5.66 Total: -105.05 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -2.08 Total: -42.88 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -80.66 -0.26 -80.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609312157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.700 kcal (2) G-P(sol) polarization free energy of solvation -80.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds